University of Southern California
USC/Norris Comprehensive Cancer Center
If you are a patient, please contact The Doctors of USC at 800-USC-CARE.

Publications for Norris Cancer Center Members in the Epigenetics and Regulation Program

  • If you want to only view publications for one year, enter the 4 digit Year (e.g., 2001) and click Filter.
  • Authors who are Program members appear in bold.
  • Authors who are CC members from other programs are underlined.

Filter by Publication Year: 

Total Number of Publications: 647
Inter Programmatic Publications: 185
Intra Programmatic Publications: 84

1: Island ER, Wu H, Warburton D, Anderson K, Tuan TL
Expression of extracellular matrix proteases by fetal and adult murine skin fibroblasts cultured in in vitro matrices.
Curr Surg 57: 640 ()
PM ID: 11120325
2: Irvine RA, Ma H, Yu MC, Ross RK, Stallcup MR, Coetzee GA
Inhibition of p160-mediated coactivation with increasing androgen receptor polyglutamine length.
Hum Mol Genet 9: 267-74 (2000)
PM ID: 10607837
3: Jadvar H, Johnson DL, Segall GM
The effect of fluorine-18 fluorodeoxyglucose positron emission tomography on the management of cutaneous malignant melanoma.
Clin Nucl Med 25: 48-51 (2000)
PM ID: 10634531
4: Sirard C, Kim SY, Mirtsos C, Tadich P, Hoodless PA, Itié A, Maxson R, Wrana JL, Mak TW
Targeted disruption in murine cells reveals variable requirement for Smad4 in transforming growth factor beta-related signaling.
J Biol Chem 275: 2063-70 (2000)
PM ID: 10636910
5: Choi J, Liu RM, Kundu RK, Sangiorgi F, Wu W, Maxson R, Forman HJ
Molecular mechanism of decreased glutathione content in human immunodeficiency virus type 1 Tat-transgenic mice.
J Biol Chem 275: 3693-8 (2000)
PM ID: 10652368
6: Tsao JL, Yatabe Y, Salovaara R, Järvinen HJ, Mecklin JP, Aaltonen LA, Tavaré S, Shibata D
Genetic reconstruction of individual colorectal tumor histories.
Proc Natl Acad Sci U S A 97: 1236-41 (2000)
PM ID: 10655514 PMC15581
7: Huang SM, Stallcup MR
Mouse Zac1, a transcriptional coactivator and repressor for nuclear receptors.
Mol Cell Biol 20: 1855-67 (2000)
PM ID: 10669760 PMC85366
8: Ireland AP, Shibata DK, Chandrasoma PT, Lord RV, Peters JH, DeMeester TR
Clinical significance of p53 mutations in adenocarcinoma of the esophagus and cardia.
Ann Surg 231: 179-87 (2000)
PM ID: 10674608 PMC1420984
9: Widelitz RB, Jiang TX, Lu J, Chuong CM
beta-catenin in epithelial morphogenesis: conversion of part of avian foot scales into feather buds with a mutated beta-catenin.
Dev Biol 219: 98-114 (2000)
PM ID: 10677258
10: Ingles SA, Garcia DG, Wang W, Nieters A, Henderson BE, Kolonel LN, Haile RW, Coetzee GA
Vitamin D receptor genotype and breast cancer in Latinas (United States).
Cancer Causes Control 11: 25-30 (2000)
PM ID: 10680726
11: Pao MM, Liang G, Tsai YC, Xiong Z, Laird PW, Jones PA
DNA methylator and mismatch repair phenotypes are not mutually exclusive in colorectal cancer cell lines.
Oncogene 19: 943-52 (2000)
PM ID: 10702803
12: Xue WM, Irvine RA, Yu MC, Ross RK, Coetzee GA, Ingles SA
Susceptibility to prostate cancer: interaction between genotypes at the androgen receptor and prostate-specific antigen loci.
Cancer Res 60: 839-41 (2000)
PM ID: 10706090
13: Domann FE, Rice JC, Hendrix MJ, Futscher BW
Epigenetic silencing of maspin gene expression in human breast cancers.
Int J Cancer 85: 805-10 (2000)
PM ID: 10709100
14: Robertson KD, Jones PA
DNA methylation: past, present and future directions.
Carcinogenesis 21: 461-7 (2000)
PM ID: 10688866
15: Lin IG, Tomzynski TJ, Ou Q, Hsieh CL
Modulation of DNA binding protein affinity directly affects target site demethylation.
Mol Cell Biol 20: 2343-9 (2000)
PM ID: 10713158 PMC85401
16: Eads CA, Danenberg KD, Kawakami K, Saltz LB, Blake C, Shibata D, Danenberg PV, Laird PW
MethyLight: a high-throughput assay to measure DNA methylation.
Nucleic Acids Res 28: E32 (2000)
PM ID: 10734209 PMC102836
17: Siegmund KD, Todorov AA
Linkage analysis for diseases with variable age of onset.
Hum Hered 50: 205-10 (2000)
PM ID: 10686502
18: Warburton D, Schwarz MA, Tefft D, Flores-Delgado G, Anderson KD, Cardoso WV
The molecular basis of lung morphogenesis.
Mech Dev 92: 55-81 (2000)
PM ID: 10704888
19: Wilkie AO, Tang Z, Elanko N, Walsh S, Twigg SR, Hurst JA, Wall SA, Chrzanowska KH, Maxson RE
Functional haploinsufficiency of the human homeobox gene MSX2 causes defects in skull ossification.
Nat Genet 24: 387-90 (2000)
PM ID: 10742103
20: Satokata I, Ma L, Ohshima H, Bei M, Woo I, Nishizawa K, Maeda T, Takano Y, Uchiyama M, Heaney S, Peters H, Tang Z, Maxson R, Maas R
Msx2 deficiency in mice causes pleiotropic defects in bone growth and ectodermal organ formation.
Nat Genet 24: 391-5 (2000)
PM ID: 10742104
21: Qin X, Shibata D, Gerson SL
Heterozygous DNA mismatch repair gene PMS2-knockout mice are susceptible to intestinal tumor induction with N-methyl-N-nitrosourea.
Carcinogenesis 21: 833-8 (2000)
PM ID: 10753224
22: Nguyen TT, Mohrbacher AF, Tsai YC, Groffen J, Heisterkamp N, Nichols PW, Yu MC, Lübbert M, Jones PA
Quantitative measure of c-abl and p15 methylation in chronic myelogenous leukemia: biological implications.
Blood 95: 2990-2 (2000)
PM ID: 10779450
23: Nguyen TT, Nguyen CT, Gonzales FA, Nichols PW, Yu MC, Jones PA
Analysis of cyclin-dependent kinase inhibitor expression and methylation patterns in human prostate cancers.
Prostate 43: 233-42 (2000)
PM ID: 10797499
24: Chan MF, Liang G, Jones PA
Relationship between transcription and DNA methylation.
Curr Top Microbiol Immunol 249: 75-86 (2000)
PM ID: 10802939
25: Laird PW
Mouse models in DNA-methylation research.
Curr Top Microbiol Immunol 249: 119-34 (2000)
PM ID: 10802942
26: Tracy RB, Hsieh CL, Lieber MR
Stable RNA/DNA hybrids in the mammalian genome: inducible intermediates in immunoglobulin class switch recombination.
Science 288: 1058-61 (2000)
PM ID: 10807577
27: Siegmund KD, Langholz B, Kraft P, Thomas DC
Testing linkage disequilibrium in sibships.
Am J Hum Genet 67: 244-8 (2000)
PM ID: 10831398 PMC1287084
28: Chai Y, Jiang X, Ito Y, Bringas P, Han J, Rowitch DH, Soriano P, McMahon AP, Sucov HM
Fate of the mammalian cranial neural crest during tooth and mandibular morphogenesis.
Development 127: 1671-9 (2000)
PM ID: 10725243
29: Rice DP, Aberg T, Chan YS, Tang Z, Kettunen PJ, Pakarinen L, Maxson RE, Thesleff I
Integration of FGF and TWIST in calvarial bone and suture development.
Development 127: 1845-55 (2000)
PM ID: 10751173
30: Chen X, Zhang D, Dennert G, Hung G, Lee AS
Eradication of murine mammary adenocarcinoma through HSVtk expression directed by the glucose-starvation inducible grp78 promoter.
Breast Cancer Res Treat 59: 81-90 (2000)
PM ID: 10752683
31: Hsieh CL
Dynamics of DNA methylation pattern.
Curr Opin Genet Dev 10: 224-8 (2000)
PM ID: 10753782
32: Robertson KD, Keyomarsi K, Gonzales FA, Velicescu M, Jones PA
Differential mRNA expression of the human DNA methyltransferases (DNMTs) 1, 3a and 3b during the G(0)/G(1) to S phase transition in normal and tumor cells.
Nucleic Acids Res 28: 2108-13 (2000)
PM ID: 10773079 PMC105379
33: Sun X, Lewandoski M, Meyers EN, Liu YH, Maxson RE, Martin GR
Conditional inactivation of Fgf4 reveals complexity of signalling during limb bud development.
Nat Genet 25: 83-6 (2000)
PM ID: 10802662
34: Sarkar PS, Appukuttan B, Han J, Ito Y, Ai C, Tsai WW, Chai Y, Stout JT, Reddy S
Heterozygous loss of Six5 in mice is sufficient to cause ocular cataracts.
Nat Genet 25: 110-4 (2000)
PM ID: 10802668
35: Salem C, Liang G, Tsai YC, Coulter J, Knowles MA, Feng AC, Groshen S, Nichols PW, Jones PA
Progressive increases in de novo methylation of CpG islands in bladder cancer.
Cancer Res 60: 2473-6 (2000)
PM ID: 10811126
36: Lecart C, Cayabyab R, Buckley S, Morrison JL, Kwong KY, Warburton D, Ramanathan RK, Jones CA, Minoo P
Bioactive transforming growth factor-beta in the lungs of extremely low birthweight neonates predicts the need for home oxygen supplementation.
Biol Neonate 77: 217-23 (2000)
PM ID: 10828572
37: Dey A, Li W
Cell cycle-independent induction of D1 and D2 cyclin expression, but not cyclin-Cdk complex formation or Rb phosphorylation, by IFNgamma in macrophages.
Biochim Biophys Acta 1497: 135-47 (2000)
PM ID: 10838167
38: Park SY, Myszka DG, Yu MC, Littler SJ, Laird-Offringa IA
HuD RNA recognition motifs play distinct roles in the formation of a stable complex with AU-rich RNA.
Mol Cell Biol 20: 4765-72 (2000)
PM ID: 10848602 PMC85909
39: Johnson SA, Mandavia N, Wang HD, Johnson DL
Transcriptional regulation of the TATA-binding protein by Ras cellular signaling.
Mol Cell Biol 20: 5000-9 (2000)
PM ID: 10866657 PMC85950
40: Li M, Baumeister P, Roy B, Phan T, Foti D, Luo S, Lee AS
ATF6 as a transcription activator of the endoplasmic reticulum stress element: thapsigargin stress-induced changes and synergistic interactions with NF-Y and YY1.
Mol Cell Biol 20: 5096-106 (2000)
PM ID: 10866666 PMC85959
41: Ben-Ari J, Makhoul IR, Dorio RJ, Buckley S, Warburton D, Walker SM
Cytokine response during hyperoxia: sequential production of pulmonary tumor necrosis factor and interleukin-6 in neonatal rats.
Isr Med Assoc J 2: 365-9 (2000)
PM ID: 10892391
42: Zhao J, Crowe DL, Castillo C, Wuenschell C, Chai Y, Warburton D
Smad7 is a TGF-beta-inducible attenuator of Smad2/3-mediated inhibition of embryonic lung morphogenesis.
Mech Dev 93: 71-81 (2000)
PM ID: 10781941
43: Yang L, Guerrero J, Hong H, DeFranco DB, Stallcup MR
Interaction of the tau2 transcriptional activation domain of glucocorticoid receptor with a novel steroid receptor coactivator, Hic-5, which localizes to both focal adhesions and the nuclear matrix.
Mol Biol Cell 11: 2007-18 (2000)
PM ID: 10848625 PMC14899
44: Salem CE, Markl ID, Bender CM, Gonzales FA, Jones PA, Liang G
PAX6 methylation and ectopic expression in human tumor cells.
Int J Cancer 87: 179-85 (2000)
PM ID: 10861471
45: Smith E, Redman RA, Logg CR, Coetzee GA, Kasahara N, Frenkel B
Glucocorticoids inhibit developmental stage-specific osteoblast cell cycle. Dissociation of cyclin A-cyclin-dependent kinase 2 from E2F4-p130 complexes.
J Biol Chem 275: 19992-20001 (2000)
PM ID: 10867026
46: Henderson SO, Coetzee GA, Ross RK, Yu MC, Henderson BE
Elevated mortality rates from circulatory disease in African American men and women of Los Angeles County, California--a possible genetic susceptibility?
Am J Med Sci 320: 18-23 (2000)
PM ID: 10910369
47: Modahl LE, Macnaughton TB, Zhu NL, Johnson DL, Lai MM
RNA-Dependent replication and transcription of hepatitis delta virus RNA involve distinct cellular RNA polymerases.
Mol Cell Biol 20: 6030-9 (2000)
PM ID: 10913185 PMC86079
48: Zhao J, Shi W, Chen HM, Warburton D
Smad7 and Smad6 differentially modulate transforming growth factor beta -induced inhibition of embryonic lung morphogenesis.
J Biol Chem 275: 23992-7 (2000)
PM ID: 10801843
49: Borok Z, Li X, Fernandes VF, Zhou B, Ann DK, Crandall ED
Differential regulation of rat aquaporin-5 promoter/enhancer activities in lung and salivary epithelial cells.
J Biol Chem 275: 26507-14 (2000)
PM ID: 10849430
50: Liu JF, Shi W, Warburton D
A cysteine residue in the helix-loop-helix domain of Id2 is critical for homodimerization and function.
Biochem Biophys Res Commun 273: 1042-7 (2000)
PM ID: 10891368
51: Tsao JL, Yatabe Y, Markl ID, Hajyan K, Jones PA, Shibata D
Bladder cancer genotype stability during clinical progression.
Genes Chromosomes Cancer 29: 26-32 (2000)
PM ID: 10918390
52: Liang G, Robertson KD, Talmadge C, Sumegi J, Jones PA
The gene for a novel transmembrane protein containing epidermal growth factor and follistatin domains is frequently hypermethylated in human tumor cells.
Cancer Res 60: 4907-12 (2000)
PM ID: 10987305
53: Rice JC, Futscher BW
Transcriptional repression of BRCA1 by aberrant cytosine methylation, histone hypoacetylation and chromatin condensation of the BRCA1 promoter.
Nucleic Acids Res 28: 3233-9 (2000)
PM ID: 10954590 PMC110706
54: Rice JC, Ozcelik H, Maxeiner P, Andrulis IL, Futscher BW
Methylation of the BRCA1 promoter is associated with decreased BRCA1 mRNA levels in clinical breast cancer specimens.
Carcinogenesis 21: 1761-5 (2000)
PM ID: 10964110
55: Eads CA, Lord RV, Kurumboor SK, Wickramasinghe K, Skinner ML, Long TI, Peters JH, DeMeester TR, Danenberg KD, Danenberg PV, Laird PW, Skinner KA
Fields of aberrant CpG island hypermethylation in Barrett's esophagus and associated adenocarcinoma.
Cancer Res 60: 5021-6 (2000)
PM ID: 11016622
56: Chuong CM, Chodankar R, Widelitz RB, Jiang TX
Evo-devo of feathers and scales: building complex epithelial appendages.
Curr Opin Genet Dev 10: 449-56 (2000)
PM ID: 11023302
57: Schwarz MA, Zhang FC, Gebb S, Starnes VA, Warburton D
Endothelial monocyte activating polypeptide II inhibits lung neovascularization and airway epithelial morphogenesis.
Mech Dev 95: 123-32 (2000)
PM ID: 10906456
58: Barr JT, Zadnik K, Wilson BS, Edrington TB, Everett DF, Fink BA, Shovlin JP, Weissman BA, Siegmund KD, Gordon MO
Factors associated with corneal scarring in the Collaborative Longitudinal Evaluation of Keratoconus (CLEK) Study.
Cornea 19: 501-7 (2000)
PM ID: 10928767
59: Bernasconi NL, Wormhoudt TA, Laird-Offringa IA
Post-transcriptional deregulation of myc genes in lung cancer cell lines.
Am J Respir Cell Mol Biol 23: 560-5 (2000)
PM ID: 11017923
60: Park JJ, Irvine RA, Buchanan G, Koh SS, Park JM, Tilley WD, Stallcup MR, Press MF, Coetzee GA
Breast cancer susceptibility gene 1 (BRCAI) is a coactivator of the androgen receptor.
Cancer Res 60: 5946-9 (2000)
PM ID: 11085509
61: London SJ, Yuan JM, Chung FL, Gao YT, Coetzee GA, Ross RK, Yu MC
Isothiocyanates, glutathione S-transferase M1 and T1 polymorphisms, and lung-cancer risk: a prospective study of men in Shanghai, China.
Lancet 356: 724-9 (2000)
PM ID: 11085692
62: Liu YH, Snead ML, Maxson RE
Transgenic mouse models of craniofacial disorders.
Methods Mol Biol 137: 499-512 (2000)
PM ID: 10948563
63: Chen M, She H, Kim A, Woodley DT, Li W
Nckbeta adapter regulates actin polymerization in NIH 3T3 fibroblasts in response to platelet-derived growth factor bb.
Mol Cell Biol 20: 7867-80 (2000)
PM ID: 11027258 PMC86398
64: Knox SS, Adelman A, Ellison RC, Arnett DK, Siegmund KD, Weidner G, Province MA
Hostility, social support, and carotid artery atherosclerosis in the National Heart, Lung, and Blood Institute Family Heart Study.
Am J Cardiol 86: 1086-9 (2000)
PM ID: 11074204
65: Driscoll B, Buckley S, Bui KC, Anderson KD, Warburton D
Telomerase in alveolar epithelial development and repair.
Am J Physiol Lung Cell Mol Physiol 279: L1191-8 (2000)
PM ID: 11076809
66: Levine AJ, Siegmund KD, Ervin CM, Diep AT, Lee ER, Frankl HD, Haile RW
The methylenetetrahydrofolate reductase 677C-->T polymorphism and distal colorectal adenoma risk.
Cancer Epidemiol Biomarkers Prev 9: 657-63 (2001)
PM ID: 10919734
67: Li W, She H
The SH2 and SH3 adapter Nck: a two-gene family and a linker between tyrosine kinases and multiple signaling networks.
Histol Histopathol 15: 947-55 (2001)
PM ID: 10963137
68: Lau JS, Baumeister P, Kim E, Roy B, Hsieh TY, Lai MZ, Lee AS
Heterogeneous nuclear ribonucleoproteins as regulators of gene expression through interactions with the human thymidine kinase promoter.
J Cell Biochem 79: 395-406 (2001)
PM ID: 10972977
69: London SJ, Yuan JM, Coetzee GA, Gao YT, Ross RK, Yu MC
CYP1A1 I462V genetic polymorphism and lung cancer risk in a cohort of men in Shanghai, China.
Cancer Epidemiol Biomarkers Prev 9: 987-91 (2001)
PM ID: 11008920
70: Chen DT, Huang SM, Stallcup MR
Synergistic, p160 coactivator-dependent enhancement of estrogen receptor function by CARM1 and p300.
J Biol Chem 275: 40810-6 (2001)
PM ID: 11010967
71: Chuong CM, Patel N, Lin J, Jung HS, Widelitz RB
Sonic hedgehog signaling pathway in vertebrate epithelial appendage morphogenesis: perspectives in development and evolution.
Cell Mol Life Sci 57: 1672-81 (2001)
PM ID: 11130174
72: Sato N, Urano F, Yoon Leem J, Kim SH, Li M, Donoviel D, Bernstein A, Lee AS, Ron D, Veselits ML, Sisodia SS, Thinakaran G
Upregulation of BiP and CHOP by the unfolded-protein response is independent of presenilin expression.
Nat Cell Biol 2: 863-70 (2001)
PM ID: 11146649
73: Stallcup MR, Chen DT, Koh SS, Ma H, Lee YH, Li HY, Schurter BT, Aswad DW
Co-operation between protein-acetylating and protein-methylating co-activators in transcriptional activation.
Biochem Soc Trans 28: 415-8 (2001)
PM ID: 10961931
74: Wu FT, Lee AS
YY1 as a regulator of replication-dependent hamster histone H3.2 promoter and an interactive partner of AP-2.
J Biol Chem 276: 28-34 (2001)
PM ID: 11018030
75: Shibata D, Aaltonen LA
Genetic predisposition and somatic diversification in tumor development and progression.
Adv Cancer Res 80: 83-114 (2001)
PM ID: 11034541
76: Dey A, She H, Kim L, Boruch A, Guris DL, Carlberg K, Sebti SM, Woodley DT, Imamoto A, Li W
Colony-stimulating factor-1 receptor utilizes multiple signaling pathways to induce cyclin D2 expression.
Mol Biol Cell 11: 3835-48 (2001)
PM ID: 11071910 PMC15040
77: Jones PA
Cancer. Death and methylation.
Nature 409: 141, 143-4 (2001)
PM ID: 11196623
78: Feigelson HS, McKean-Cowdin R, Coetzee GA, Stram DO, Kolonel LN, Henderson BE
Building a multigenic model of breast cancer susceptibility: CYP17 and HSD17B1 are two important candidates.
Cancer Res 61: 785-9 (2001)
PM ID: 11212283
79: Marsh AG, Maxson RE, Manahan DT
High macromolecular synthesis with low metabolic cost in Antarctic sea urchin embryos.
Science 291: 1950-2 (2001)
PM ID: 11239152
80: Zadnik K, Barr JT, Edrington TB, Nichols JJ, Wilson BS, Siegmund KD, Gordon MO
Corneal scarring and vision in keratoconus: a baseline report from the Collaborative Longitudinal Evaluation of Keratoconus (CLEK) Study.
Cornea 19: 804-12 (2001)
PM ID: 11095054
81: Saw SM, Yuan JM, Ong CN, Arakawa K, Lee HP, Coetzee GA, Yu MC
Genetic, dietary, and other lifestyle determinants of plasma homocysteine concentrations in middle-aged and older Chinese men and women in Singapore.
Am J Clin Nutr 73: 232-9 (2001)
PM ID: 11157318
82: McKean-Cowdin R, Feigelson HS, Pike MC, Coetzee GA, Kolonel LN, Henderson BE
Risk of endometrial cancer and estrogen replacement therapy history by CYP17 genotype.
Cancer Res 61: 848-9 (2001)
PM ID: 11221867
83: Nakayama J, Rice JC, Strahl BD, Allis CD, Grewal SI
Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly.
Science 292: 110-3 (2001)
PM ID: 11283354
84: Koh SS, Chen DT, Lee YH, Stallcup MR
Synergistic enhancement of nuclear receptor function by p160 coactivators and two coactivators with protein methyltransferase activities.
J Biol Chem 276: 1089-98 (2001)
PM ID: 11050077
85: Zhao J, Chen HM, Peschon JJ, Shi W, Zhang Y, Frank SJ, Warburton D
Pulmonary hypoplasia in mice lacking tumor necrosis factor-alpha converting enzyme indicates an indispensable role for cell surface protein shedding during embryonic lung branching morphogenesis.
Dev Biol 232: 204-18 (2001)
PM ID: 11254358
86: Cortessis V, Siegmund KD, Chen QR, Zhou N, Diep AT, Frankl H, Lee EJ, Zhu QS, Haile R, Levy D
A case-control study of microsomal epoxide hydrolase, smoking, meat consumption, glutathione S-transferase M3, and risk of colorectal adenomas.
Cancer Res 61: 2381-5 (2001)
PM ID: 11289100
87: Katsamba PS, Myszka DG, Laird-Offringa IA
Two functionally distinct steps mediate high affinity binding of U1A protein to U1 hairpin II RNA.
J Biol Chem 276: 21476-81 (2001)
PM ID: 11297556
88: Lopez GN, Turck CW, Schaufele F, Stallcup MR, Kushner PJ
Growth factors signal to steroid receptors through mitogen-activated protein kinase regulation of p160 coactivator activity.
J Biol Chem 276: 22177-82 (2001)
PM ID: 11301320
89: Lu SC, Alvarez L, Huang ZZ, Chen L, An W, Corrales FJ, Avila MA, Kanel G, Mato JM
Methionine adenosyltransferase 1A knockout mice are predisposed to liver injury and exhibit increased expression of genes involved in proliferation.
Proc Natl Acad Sci U S A 98: 5560-5 (2001)
PM ID: 11320206 PMC33252
90: Kawakami K, Brabender J, Lord RV, Groshen S, Greenwald BD, Krasna MJ, Yin J, Fleisher AS, Abraham JM, Beer DG, Sidransky D, Huss HT, DeMeester TR, Eads CA, Laird PW, Ilson DH, Kelsen DP, Harpole DH, Moore MB, Danenberg KD, Danenberg PV, Meltzer SJ
Hypermethylated APC DNA in plasma and prognosis of patients with esophageal adenocarcinoma.
J Natl Cancer Inst 92: 1805-11 (2001)
PM ID: 11078757
91: Chen SA, Tsai MH, Wu FT, Hsiang A, Chen YL, Lei HY, Tzai TS, Leung HW, Jin YT, Hsieh CL, Hwang LH, Lai MD
Induction of antitumor immunity with combination of HER2/neu DNA vaccine and interleukin 2 gene-modified tumor vaccine.
Clin Cancer Res 6: 4381-8 (2001)
PM ID: 11106257
92: Parker R, Phan T, Baumeister P, Roy B, Cheriyath V, Roy AL, Lee AS
Identification of TFII-I as the endoplasmic reticulum stress response element binding factor ERSF: its autoregulation by stress and interaction with ATF6.
Mol Cell Biol 21: 3220-33 (2001)
PM ID: 11287625 PMC86961
93: Shi W, Zhao J, Anderson KD, Warburton D
Gremlin negatively modulates BMP-4 induction of embryonic mouse lung branching morphogenesis.
Am J Physiol Lung Cell Mol Physiol 280: L1030-9 (2001)
PM ID: 11290528
94: Eads CA, Lord RV, Wickramasinghe K, Long TI, Kurumboor SK, Bernstein L, Peters JH, DeMeester SR, DeMeester TR, Skinner KA, Laird PW
Epigenetic patterns in the progression of esophageal adenocarcinoma.
Cancer Res 61: 3410-8 (2001)
PM ID: 11309301
95: Karanjawala ZE, Shi X, Hsieh CL, Lieber MR
The mammalian FEN-1 locus: structure and conserved sequence features.
Microb Comp Genomics 5: 173-7 (2001)
PM ID: 11252354
96: Siegmund KD, Langholz B
Stratified case sampling and the use of family controls.
Genet Epidemiol 20: 316-27 (2001)
PM ID: 11255241
97: Lin IG, Hsieh CL
Chromosomal DNA demethylation specified by protein binding.
EMBO Rep 2: 108-12 (2001)
PM ID: 11258701 PMC1083819
98: Wilkie AO, Oldridge M, Tang Z, Maxson RE
Craniosynostosis and related limb anomalies.
Novartis Found Symp 232: 122-33; discussion 133-43 (2001)
PM ID: 11277076
99: Han LL, Lin IG, Hsieh CL
Protein binding protects sites on stable episomes and in the chromosome from de novo methylation.
Mol Cell Biol 21: 3416-24 (2001)
PM ID: 11313467 PMC100263
100: Blake C, Tsao JL, Wu AH, Shibata D
Stepwise deletions of polyA sequences in mismatch repair-deficient colorectal cancers.
Am J Pathol 158: 1867-70 (2001)
PM ID: 11337385 PMC1891934
101: Flores-Delgado G, Bringas P, Buckley S, Anderson KD, Warburton D
Nongenomic estrogen action in human lung myofibroblasts.
Biochem Biophys Res Commun 283: 661-7 (2001)
PM ID: 11341776
102: Huang SM, Schönthal AH, Stallcup MR
Enhancement of p53-dependent gene activation by the transcriptional coactivator Zac1.
Oncogene 20: 2134-43 (2001)
PM ID: 11360197
103: Vilkki S, Tsao JL, Loukola A, Pöyhönen M, Vierimaa O, Herva R, Aaltonen LA, Shibata D
Extensive somatic microsatellite mutations in normal human tissue.
Cancer Res 61: 4541-4 (2001)
PM ID: 11389087
104: Hsieh CL, Oakley-Girvan I, Balise RR, Halpern J, Gallagher RP, Wu AH, Kolonel LN, O'Brien LE, Lin IG, Van Den Berg DJ, Teh CZ, West DW, Whittemore AS
A genome screen of families with multiple cases of prostate cancer: evidence of genetic heterogeneity.
Am J Hum Genet 69: 148-58 (2001)
PM ID: 11404817 PMC1226029
105: Tezel G, Siegmund KD, Trinkaus K, Wax MB, Kass MA, Kolker AE
Clinical factors associated with progression of glaucomatous optic disc damage in treated patients.
Arch Ophthalmol 119: 813-8 (2001)
PM ID: 11405831
106: Wu X, Wu J, Huang JF, Powell WC, Zhang J, Matusik RJ, Sangiorgi FO, Maxson RE, Sucov HM, Roy-Burman P
Generation of a prostate epithelial cell-specific Cre transgenic mouse model for tissue-specific gene ablation.
Mech Dev 101: 61-9 (2001)
PM ID: 11231059
107: Rice JC, Allis CD
Histone methylation versus histone acetylation: new insights into epigenetic regulation.
Curr Opin Cell Biol 13: 263-73 (2001)
PM ID: 11343896
108: Gauderman WJ, Siegmund KD
Gene-environment interaction and affected sib pair linkage analysis.
Hum Hered 52: 34-46 (2001)
PM ID: 11359066
109: Xue WM, Coetzee GA, Ross RK, Irvine RA, Kolonel LM, Henderson BE, Ingles SA
Genetic determinants of serum prostate-specific antigen levels in healthy men from a multiethnic cohort.
Cancer Epidemiol Biomarkers Prev 10: 575-9 (2001)
PM ID: 11401905
110: Acosta JM, Thébaud B, Castillo C, Mailleux A, Tefft D, Wuenschell C, Anderson KD, Bourbon J, Thiery JP, Bellusci S, Warburton D
Novel mechanisms in murine nitrofen-induced pulmonary hypoplasia: FGF-10 rescue in culture.
Am J Physiol Lung Cell Mol Physiol 281: L250-7 (2001)
PM ID: 11404268
111: Phagoo SB, Reddi K, Anderson KD, Leeb-Lundberg LM, Warburton D
Bradykinin B1 receptor up-regulation by interleukin-1beta and B1 agonist occurs through independent and synergistic intracellular signaling mechanisms in human lung fibroblasts.
J Pharmacol Exp Ther 298: 77-85 (2001)
PM ID: 11408528
112: Stallcup MR
Role of protein methylation in chromatin remodeling and transcriptional regulation.
Oncogene 20: 3014-20 (2001)
PM ID: 11420716
113: Mailleux AA, Tefft D, Ndiaye D, Itoh N, Thiery JP, Warburton D, Bellusci S
Evidence that SPROUTY2 functions as an inhibitor of mouse embryonic lung growth and morphogenesis.
Mech Dev 102: 81-94 (2001)
PM ID: 11287183
114: Pao MM, Tsutsumi M, Liang G, Uzvolgyi E, Gonzales FA, Jones PA
The endothelin receptor B (EDNRB) promoter displays heterogeneous, site specific methylation patterns in normal and tumor cells.
Hum Mol Genet 10: 903-10 (2001)
PM ID: 11309363
115: Shibata D
Talking tumours: histories from sequences.
Ann Med 33: 148-52 (2001)
PM ID: 11327118
116: Schurter BT, Koh SS, Chen DT, Bunick GJ, Harp JM, Hanson BL, Henschen-Edman A, Mackay DR, Stallcup MR, Aswad DW
Methylation of histone H3 by coactivator-associated arginine methyltransferase 1.
Biochemistry 40: 5747-56 (2001)
PM ID: 11341840
117: Wajed SA, Laird PW, DeMeester TR
DNA methylation: an alternative pathway to cancer.
Ann Surg 234: 10-20 (2001)
PM ID: 11420478 PMC1421942
118: Buckley S, Driscoll B, Shi W, Anderson K, Warburton D
Migration and gelatinases in cultured fetal, adult, and hyperoxic alveolar epithelial cells.
Am J Physiol Lung Cell Mol Physiol 281: L427-34 (2001)
PM ID: 11435218
119: Xiong Z, Wu AH, Bender CM, Tsao JL, Blake C, Shibata D, Jones PA, Yu MC, Ross RK, Laird PW
Mismatch repair deficiency and CpG island hypermethylation in sporadic colon adenocarcinomas.
Cancer Epidemiol Biomarkers Prev 10: 799-803 (2001)
PM ID: 11440966
120: Markl ID, Cheng JP, Liang G, Shibata D, Laird PW, Jones PA
Global and gene-specific epigenetic patterns in human bladder cancer genomes are relatively stable in vivo and in vitro over time.
Cancer Res 61: 5875-84 (2001)
PM ID: 11479229
121: Baumann CT, Ma H, Wolford R, Reyes JC, Maruvada P, Lim C, Yen PM, Stallcup MR, Hager GL
The glucocorticoid receptor interacting protein 1 (GRIP1) localizes in discrete nuclear foci that associate with ND10 bodies and are enriched in components of the 26S proteasome.
Mol Endocrinol 15: 485-500 (2001)
PM ID: 11266502
122: Ito Y, Sarkar P, Mi Q, Wu N, Bringas P, Liu Y, Reddy S, Maxson R, Deng C, Chai Y
Overexpression of Smad2 reveals its concerted action with Smad4 in regulating TGF-beta-mediated epidermal homeostasis.
Dev Biol 236: 181-94 (2001)
PM ID: 11456453
123: Siegmund KD, Gauderman WJ
Association tests in nuclear families.
Hum Hered 52: 66-76 (2001)
PM ID: 11474207
124: Jones PA, Takai D
The role of DNA methylation in mammalian epigenetics.
Science 293: 1068-70 (2001)
PM ID: 11498573
125: Lee AS
The glucose-regulated proteins: stress induction and clinical applications.
Trends Biochem Sci 26: 504-10 (2001)
PM ID: 11504627
126: Matsubara S, Wada Y, Gardner TA, Egawa M, Park MS, Hsieh CL, Zhau HE, Kao CC, Kamidono S, Gillenwater JY, Chung LW
A conditional replication-competent adenoviral vector, Ad-OC-E1a, to cotarget prostate cancer and bone stroma in an experimental model of androgen-independent prostate cancer bone metastasis.
Cancer Res 61: 6012-9 (2001)
PM ID: 11507044
127: Ito Y, Zhao J, Mogharei A, Shuler CF, Weinstein M, Deng C, Chai Y
Antagonistic effects of Smad2 versus Smad7 are sensitive to their expression level during tooth development.
J Biol Chem 276: 44163-72 (2001)
PM ID: 11557747
128: Acosta JM, Chai Y, Meara JG, Bringas P, Anderson KD, Warburton D
Prenatal exposure to nitrofen induces Fryns phenotype in mice.
Ann Plast Surg 46: 635-40 (2001)
PM ID: 11405365
129: Li W, Fan J, Woodley DT
Nck/Dock: an adapter between cell surface receptors and the actin cytoskeleton.
Oncogene 20: 6403-17 (2001)
PM ID: 11607841
130: Chen SL, Loffler KA, Chen DT, Stallcup MR, Muscat GE
The coactivator-associated arginine methyltransferase is necessary for muscle differentiation: CARM1 coactivates myocyte enhancer factor-2.
J Biol Chem 277: 4324-33 (2001)
PM ID: 11713257
131: Strahl BD, Briggs SD, Brame CJ, Caldwell JA, Koh SS, Ma H, Cook RG, Shabanowitz J, Hunt DF, Stallcup MR, Allis CD
Methylation of histone H4 at arginine 3 occurs in vivo and is mediated by the nuclear receptor coactivator PRMT1.
Curr Biol 11: 996-1000 (2001)
PM ID: 11448779
132: Zhao J, Chen HM, Wang YL, Warburton D
Abrogation of tumor necrosis factor-alpha converting enzyme inhibits embryonic lung morphogenesis in culture.
Int J Dev Biol 45: 623-31 (2001)
PM ID: 11460998
133: Wu AH, Shibata D, Yu MC, Lai MY, Ross RK
Dietary heterocyclic amines and microsatellite instability in colon adenocarcinomas.
Carcinogenesis 22: 1681-4 (2001)
PM ID: 11577009
134: Nguyen C, Liang G, Nguyen TT, Tsao-Wei DD, Groshen S, Lübbert M, Zhou JH, Benedict WF, Jones PA
Susceptibility of nonpromoter CpG islands to de novo methylation in normal and neoplastic cells.
J Natl Cancer Inst 93: 1465-72 (2001)
PM ID: 11584062
135: Chan MF, van Amerongen R, Nijjar T, Cuppen E, Jones PA, Laird PW
Reduced rates of gene loss, gene silencing, and gene mutation in Dnmt1-deficient embryonic stem cells.
Mol Cell Biol 21: 7587-600 (2001)
PM ID: 11604495 PMC99930
136: Rice JC, Allis CD
Code of silence.
Nature 414: 258-61 (2001)
PM ID: 11713509
137: Kato H, Tjernberg A, Zhang W, Krutchinsky AN, An W, Takeuchi T, Ohtsuki Y, Sugano S, de Bruijn DR, Chait BT, Roeder RG
SYT associates with human SNF/SWI complexes and the C-terminal region of its fusion partner SSX1 targets histones.
J Biol Chem 277: 5498-505 (2001)
PM ID: 11734557
138: Ingles SA, Wang JG, Coetzee GA, Lee ER, Frankl HD, Haile RW
Vitamin D receptor polymorphisms and risk of colorectal adenomas (United States).
Cancer Causes Control 12: 607-14 (2002)
PM ID: 11552708
139: Nguyen CT, Gonzales FA, Jones PA
Altered chromatin structure associated with methylation-induced gene silencing in cancer cells: correlation of accessibility, methylation, MeCP2 binding and acetylation.
Nucleic Acids Res 29: 4598-606 (2002)
PM ID: 11713309 PMC92514
140: Takai D, Gonzales FA, Tsai YC, Thayer MJ, Jones PA
Large scale mapping of methylcytosines in CTCF-binding sites in the human H19 promoter and aberrant hypomethylation in human bladder cancer.
Hum Mol Genet 10: 2619-26 (2002)
PM ID: 11726548
141: Warburton D, Tefft D, Mailleux A, Bellusci S, Thiery JP, Zhao J, Buckley S, Shi W, Driscoll B
Do lung remodeling, repair, and regeneration recapitulate respiratory ontogeny?
Am J Respir Crit Care Med 164: S59-62 (2002)
PM ID: 11734468
142: Liang G, Chan MF, Tomigahara Y, Tsai YC, Gonzales FA, Li EM, Laird PW, Jones PA
Cooperativity between DNA methyltransferases in the maintenance methylation of repetitive elements.
Mol Cell Biol 22: 480-91 (2002)
PM ID: 11756544 PMC139739
143: Jiang X, Iseki S, Maxson RE, Sucov HM, Morriss-Kay GM
Tissue origins and interactions in the mammalian skull vault.
Dev Biol 241: 106-16 (2002)
PM ID: 11784098
144: Lin IG, Han LL, Taghva A, O'Brien LE, Hsieh CL
Murine de novo methyltransferase Dnmt3a demonstrates strand asymmetry and site preference in the methylation of DNA in vitro.
Mol Cell Biol 22: 704-23 (2002)
PM ID: 11784849 PMC133553
145: Kwang SJ, Brugger SM, Lazik A, Merrill AE, Wu LY, Liu YH, Ishii M, Sangiorgi FO, Rauchman M, Sucov HM, Maas RL, Maxson RE
Msx2 is an immediate downstream effector of Pax3 in the development of the murine cardiac neural crest.
Development 129: 527-38 (2002)
PM ID: 11807043
146: Smith E, Coetzee GA, Frenkel B
Glucocorticoids inhibit cell cycle progression in differentiating osteoblasts via glycogen synthase kinase-3beta.
J Biol Chem 277: 18191-7 (2002)
PM ID: 11877389
147: Jaskoll T, Zhou YM, Chai Y, Makarenkova HP, Collinson JM, West JD, Hajihosseini MK, Lee JW, Melnick M
Embryonic submandibular gland morphogenesis: stage-specific protein localization of FGFs, BMPs, Pax6 and Pax9 in normal mice and abnormal SMG phenotypes in FgfR2-IIIc(+/Delta), BMP7(-/-) and Pax6(-/-) mice.
Cells Tissues Organs 170: 83-98 (2002)
PM ID: 11731698
148: Ma H, Baumann CT, Li HY, Strahl BD, Rice R, Jelinek MA, Aswad DW, Allis CD, Hager GL, Stallcup MR
Hormone-dependent, CARM1-directed, arginine-specific methylation of histone H3 on a steroid-regulated promoter.
Curr Biol 11: 1981-5 (2002)
PM ID: 11747826
149: Li W, Nadelman C, Gratch NS, Li W, Chen M, Kasahara N, Woodley DT
An important role for protein kinase C-delta in human keratinocyte migration on dermal collagen.
Exp Cell Res 273: 219-28 (2002)
PM ID: 11822877
150: Zhao J, Shi W, Wang YL, Chen HM, Bringas P, Datto MB, Frederick JP, Wang XF, Warburton D
Smad3 deficiency attenuates bleomycin-induced pulmonary fibrosis in mice.
Am J Physiol Lung Cell Mol Physiol 282: L585-93 (2002)
PM ID: 11839555
151: Liang G, Gonzales FA, Jones PA, Orntoft TF, Thykjaer T
Analysis of gene induction in human fibroblasts and bladder cancer cells exposed to the methylation inhibitor 5-aza-2'-deoxycytidine.
Cancer Res 62: 961-6 (2002)
PM ID: 11861364
152: Laiho P, Launonen V, Lahermo P, Esteller M, Guo M, Herman JG, Mecklin JP, Järvinen HJ, Sistonen P, Kim KM, Shibata D, Houlston RS, Aaltonen LA
Low-level microsatellite instability in most colorectal carcinomas.
Cancer Res 62: 1166-70 (2002)
PM ID: 11861399
153: Tan DP, Nonaka K, Nuckolls GH, Liu YH, Maxson RE, Slavkin HC, Shum L
YY1 activates Msx2 gene independent of bone morphogenetic protein signaling.
Nucleic Acids Res 30: 1213-23 (2002)
PM ID: 11861914 PMC101235
154: Takai D, Jones PA
Comprehensive analysis of CpG islands in human chromosomes 21 and 22.
Proc Natl Acad Sci U S A 99: 3740-5 (2002)
PM ID: 11891299 PMC122594
155: Margolin K, Atkins B, Thompson A, Ernstoff S, Weber JS, Flaherty L, Clark I, Weiss G, Sosman J, II Smith W, Dutcher P, Gollob J, Longmate J, Johnson DL
Temozolomide and whole brain irradiation in melanoma metastatic to the brain: a phase II trial of the Cytokine Working Group.
J Cancer Res Clin Oncol 128: 214-8 (2002)
PM ID: 11935312
156: Hsieh CL, Chung LW
New prospectives of prostate cancer gene therapy: molecular targets and animal models.
Crit Rev Eukaryot Gene Expr 11: 77-120 (2002)
PM ID: 11693967
157: Siegmund KD, Vora H, Gauderman WJ
Combined linkage and association analysis in pedigrees.
Genet Epidemiol 21 Suppl 1: S358-63 (2002)
PM ID: 11793698
158: Gauderman WJ, Morrison JL, Siegmund KD
Should we consider gene x environment interaction in the hunt for quantitative trait loci?
Genet Epidemiol 21 Suppl 1: S831-6 (2002)
PM ID: 11793788
159: Widschwendter M, Jones PA
The potential prognostic, predictive, and therapeutic values of DNA methylation in cancer. Commentary re: J. Kwong et al., Promoter hypermethylation of multiple genes in nasopharyngeal carcinoma. Clin. Cancer Res., 8: 131-137, 2002, and H-Z. Zou et al., Detection of aberrant p16 methylation in the serum of colorectal cancer patients. Clin. Cancer Res., 8: 188-191, 2002.
Clin Cancer Res 8: 17-21 (2002)
PM ID: 11801535
160: Li W, Nadelman C, Henry G, Fan J, Muellenhoff M, Medina E, Gratch NS, Chen M, Han J, Woodley DT
The p38-MAPK/SAPK pathway is required for human keratinocyte migration on dermal collagen.
J Invest Dermatol 117: 1601-11 (2002)
PM ID: 11886529
161: Eads CA, Nickel AE, Laird PW
Complete genetic suppression of polyp formation and reduction of CpG-island hypermethylation in Apc(Min/+) Dnmt1-hypomorphic Mice.
Cancer Res 62: 1296-9 (2002)
PM ID: 11888894
162: Luna MC, Chen X, Wong SG, Tsui J, Rucker N, Lee AS, Gomer CJ
Enhanced photodynamic therapy efficacy with inducible suicide gene therapy controlled by the grp promoter.
Cancer Res 62: 1458-61 (2002)
PM ID: 11888920
163: Warburton D
Sound the tocsin! Beware adverse effects of lung inflammation early in gestation.
Am J Respir Crit Care Med 165: 741-2 (2002)
PM ID: 11897634
164: Müller-Ehmsen J, Peterson KL, Kedes L, Whittaker P, Dow JS, Long TI, Laird PW, Kloner RA
Rebuilding a damaged heart: long-term survival of transplanted neonatal rat cardiomyocytes after myocardial infarction and effect on cardiac function.
Circulation 105: 1720-6 (2002)
PM ID: 11940553
165: Koh SS, Li HY, Lee YH, Widelitz RB, Chuong CM, Stallcup MR
Synergistic coactivator function by coactivator-associated arginine methyltransferase (CARM) 1 and beta-catenin with two different classes of DNA-binding transcriptional activators.
J Biol Chem 277: 26031-5 (2002)
PM ID: 11983685
166: Wu FT, Lee AS
CDP and AP-2 mediated repression mechanism of the replication-dependent hamster histone H3.2 promoter.
J Cell Biochem 84: 699-707 (2002)
PM ID: 11835395
167: Trinh BN, Long TI, Laird PW
DNA methylation analysis by MethyLight technology.
Methods 25: 456-62 (2002)
PM ID: 11846615
168: Trinh BN, Long TI, Nickel AE, Shibata D, Laird PW
DNA methyltransferase deficiency modifies cancer susceptibility in mice lacking DNA mismatch repair.
Mol Cell Biol 22: 2906-17 (2002)
PM ID: 11940649 PMC133764
169: Kim KM, Salovaara R, Mecklin JP, Järvinen HJ, Aaltonen LA, Shibata D
PolyA deletions in hereditary nonpolyposis colorectal cancer: mutations before a gatekeeper.
Am J Pathol 160: 1503-6 (2002)
PM ID: 11943734 PMC1867223
170: Velicescu M, Weisenberger DJ, Gonzales FA, Tsai YC, Nguyen CT, Jones PA
Cell division is required for de novo methylation of CpG islands in bladder cancer cells.
Cancer Res 62: 2378-84 (2002)
PM ID: 11956100
171: Siegmund KD, Langholz B
Ascertainment bias in family-based case-control studies.
Am J Epidemiol 155: 875-80 (2002)
PM ID: 11978593
172: An W, Palhan VB, Karymov MA, Leuba SH, Roeder RG
Selective requirements for histone H3 and H4 N termini in p300-dependent transcriptional activation from chromatin.
Mol Cell 9: 811-21 (2002)
PM ID: 11983172
173: Lee YH, Koh SS, Zhang XK, Cheng X, Stallcup MR
Synergy among nuclear receptor coactivators: selective requirement for protein methyltransferase and acetyltransferase activities.
Mol Cell Biol 22: 3621-32 (2002)
PM ID: 11997499 PMC133819
174: Katsamba PS, Bayramyan M, Haworth IS, Myszka DG, Laird-Offringa IA
Complex role of the beta 2-beta 3 loop in the interaction of U1A with U1 hairpin II RNA.
J Biol Chem 277: 33267-74 (2002)
PM ID: 12082087
175: Müller-Ehmsen J, Whittaker P, Kloner RA, Dow JS, Sakoda T, Long TI, Laird PW, Kedes L
Survival and development of neonatal rat cardiomyocytes transplanted into adult myocardium.
J Mol Cell Cardiol 34: 107-16 (2002)
PM ID: 11851351
176: Karanjawala ZE, Murphy N, Hinton DR, Hsieh CL, Lieber MR
Oxygen metabolism causes chromosome breaks and is associated with the neuronal apoptosis observed in DNA double-strand break repair mutants.
Curr Biol 12: 397-402 (2002)
PM ID: 11882291
177: Li JZ, Xu Z, Zheng YT, Johnson DL, Ou JH
Regulation of hepatocyte nuclear factor 1 activity by wild-type and mutant hepatitis B virus X proteins.
J Virol 76: 5875-81 (2002)
PM ID: 12021320 PMC136206
178: Jones PA, Baylin SB
The fundamental role of epigenetic events in cancer.
Nat Rev Genet 3: 415-28 (2002)
PM ID: 12042769
179: Trinh BN, Ong CN, Coetzee GA, Yu MC, Laird PW
Thymidylate synthase: a novel genetic determinant of plasma homocysteine and folate levels.
Hum Genet 111: 299-302 (2002)
PM ID: 12215845
180: Nishioka K, Rice JC, Sarma K, Erdjument-Bromage H, Werner J, Wang Y, Chuikov S, Valenzuela P, Tempst P, Steward R, Lis JT, Allis CD, Reinberg D
PR-Set7 is a nucleosome-specific methyltransferase that modifies lysine 20 of histone H4 and is associated with silent chromatin.
Mol Cell 9: 1201-13 (2002)
PM ID: 12086618
181: Jones PA
DNA methylation and cancer.
Oncogene 21: 5358-60 (2002)
PM ID: 12154398
182: Kim KM, Shibata D
Methylation reveals a niche: stem cell succession in human colon crypts.
Oncogene 21: 5441-9 (2002)
PM ID: 12154406
183: Tsou JA, Hagen JA, Carpenter CL, Laird-Offringa IA
DNA methylation analysis: a powerful new tool for lung cancer diagnosis.
Oncogene 21: 5450-61 (2002)
PM ID: 12154407
184: Widschwendter M, Jones PA
DNA methylation and breast carcinogenesis.
Oncogene 21: 5462-82 (2002)
PM ID: 12154408
185: Virmani AK, Tsou JA, Siegmund KD, Shen LY, Long TI, Laird PW, Gazdar AF, Laird-Offringa IA
Hierarchical clustering of lung cancer cell lines using DNA methylation markers.
Cancer Epidemiol Biomarkers Prev 11: 291-7 (2002)
PM ID: 11895880
186: Leinwand MJ, Zhao J, Tefft JD, Anderson KD, Warburton D
Murine nitrofen-induced pulmonary hypoplasia does not involve induction of TGF-beta signaling.
J Pediatr Surg 37: 1123-7 (2002)
PM ID: 12149686
187: Coetzee GA, Irvine RA
Size of the androgen receptor CAG repeat and prostate cancer: does it matter?
J Clin Oncol 20: 3572-3 (2002)
PM ID: 12202654
188: Li HY, Park SY, Kilburn B, Jelinek MA, Henschen-Edman A, Aswad DW, Stallcup MR, Laird-Offringa IA
Lipopolysaccharide-induced methylation of HuR, an mRNA-stabilizing protein, by CARM1. Coactivator-associated arginine methyltransferase.
J Biol Chem 277: 44623-30 (2002)
PM ID: 12237300
189: Teyssier C, Chen DT, Stallcup MR
Requirement for multiple domains of the protein arginine methyltransferase CARM1 in its transcriptional coactivator function.
J Biol Chem 277: 46066-72 (2002)
PM ID: 12351636
190: Eads CA, Laird PW
Combined bisulfite restriction analysis (COBRA).
Methods Mol Biol 200: 71-85 (2002)
PM ID: 11951656
191: Ito Y, Bringas P, Mogharei A, Zhao J, Deng C, Chai Y
Receptor-regulated and inhibitory Smads are critical in regulating transforming growth factor beta-mediated Meckel's cartilage development.
Dev Dyn 224: 69-78 (2002)
PM ID: 11984875
192: Katsamba PS, Park SY, Laird-Offringa IA
Kinetic studies of RNA-protein interactions using surface plasmon resonance.
Methods 26: 95-104 (2002)
PM ID: 12054886
193: Luo S, Lee AS
Requirement of the p38 mitogen-activated protein kinase signalling pathway for the induction of the 78 kDa glucose-regulated protein/immunoglobulin heavy-chain binding protein by azetidine stress: activating transcription factor 6 as a target for stress-induced phosphorylation.
Biochem J 366: 787-95 (2002)
PM ID: 12076252 PMC1222838
194: Leinwand MJ, Tefft JD, Zhao J, Coleman C, Anderson KD, Warburton D
Nitrofen inhibition of pulmonary growth and development occurs in the early embryonic mouse.
J Pediatr Surg 37: 1263-8 (2002)
PM ID: 12194114
195: Rice JC, Nishioka K, Sarma K, Steward R, Reinberg D, Allis CD
Mitotic-specific methylation of histone H4 Lys 20 follows increased PR-Set7 expression and its localization to mitotic chromosomes.
Genes Dev 16: 2225-30 (2002)
PM ID: 12208845 PMC186671
196: Irvine RA, Lin IG, Hsieh CL
DNA methylation has a local effect on transcription and histone acetylation.
Mol Cell Biol 22: 6689-96 (2002)
PM ID: 12215526 PMC134040
197: Buckley S, Warburton D
Dynamics of metalloproteinase-2 and -9, TGF-beta, and uPA activities during normoxic vs. hyperoxic alveolarization.
Am J Physiol Lung Cell Mol Physiol 283: L747-54 (2002)
PM ID: 12225951
198: Ehrlich M, Jiang G, Fiala E, Dome JS, Yu MC, Long TI, Youn B, Sohn OS, Widschwendter M, Tomlinson GE, Chintagumpala M, Champagne M, Parham D, Liang G, Malik K, Laird PW
Hypomethylation and hypermethylation of DNA in Wilms tumors.
Oncogene 21: 6694-702 (2002)
PM ID: 12242669
199: Yu MC, Wu PE, Widelitz RB, Chuong CM
The morphogenesis of feathers.
Nature 420: 308-12 (2002)
PM ID: 12442169
200: An W, Roeder RG
Direct association of p300 with unmodified H3 and H4 N termini modulates p300-dependent acetylation and transcription of nucleosomal templates.
J Biol Chem 278: 1504-10 (2002)
PM ID: 12421817
201: Buchanan G, Irvine RA, Coetzee GA, Tilley WD
Contribution of the androgen receptor to prostate cancer predisposition and progression.
Cancer Metastasis Rev 20: 207-23 (2002)
PM ID: 12085963
202: Daskalakis M, Nguyen TT, Nguyen C, Guldberg P, Köhler G, Wijermans P, Jones PA, Lübbert M
Demethylation of a hypermethylated P15/INK4B gene in patients with myelodysplastic syndrome by 5-Aza-2'-deoxycytidine (decitabine) treatment.
Blood 100: 2957-64 (2002)
PM ID: 12351408
203: Tsao JL, Dudley S, Kwok B, Nickel AE, Laird PW, Siegmund KD, Liskay RM, Shibata D
Diet, cancer and aging in DNA mismatch repair deficient mice.
Carcinogenesis 23: 1807-10 (2002)
PM ID: 12419828
204: Cui H, Onyango P, Brandenburg S, Wu Y, Hsieh CL, Feinberg AP
Loss of imprinting in colorectal cancer linked to hypomethylation of H19 and IGF2.
Cancer Res 62: 6442-6 (2002)
PM ID: 12438232
205: Nguyen CT, Weisenberger DJ, Velicescu M, Gonzales FA, Lin JC, Liang G, Jones PA
Histone H3-lysine 9 methylation is associated with aberrant gene silencing in cancer cells and is rapidly reversed by 5-aza-2'-deoxycytidine.
Cancer Res 62: 6456-61 (2002)
PM ID: 12438235
206: Chedin F, Lieber MR, Hsieh CL
The DNA methyltransferase-like protein DNMT3L stimulates de novo methylation by Dnmt3a.
Proc Natl Acad Sci U S A 99: 16916-21 (2002)
PM ID: 12481029 PMC139244
207: Weisenberger DJ, Velicescu M, Preciado-Lopez MA, Gonzales FA, Tsai YC, Liang G, Jones PA
Identification and characterization of alternatively spliced variants of DNA methyltransferase 3a in mammalian cells.
Gene 298: 91-9 (2003)
PM ID: 12406579
208: Reddy RK, Dubeau L, Kleiner H, Parr T, Nichols PW, Ko B, Dong D, Ko H, Mao C, DiGiovanni J, Lee AS
Cancer-inducible transgene expression by the Grp94 promoter: spontaneous activation in tumors of various origins and cancer-associated macrophages.
Cancer Res 62: 7207-12 (2003)
PM ID: 12499260
209: Chodankar R, Chang CH, Yue Z, Jiang TX, Suksaweang S, Burrus LW, Chuong CM, Widelitz RB
Shift of localized growth zones contributes to skin appendage morphogenesis: role of the Wnt/beta-catenin pathway.
J Invest Dermatol 120: 20-6 (2003)
PM ID: 12535194
210: Aparicio AM, Eads CA, Leong LA, Laird PW, Newman EM, Synold TW, Baker SD, Zhao M, Weber JS
Phase I trial of continuous infusion 5-aza-2'-deoxycytidine.
Cancer Chemother Pharmacol 51: 231-9 (2003)
PM ID: 12655442
211: Ma L, Liu JF, Wu T, Plikus MV, Jiang TX, Bi Q, Liu YH, Müller-Röver S, Peters H, Sundberg JP, Maxson R, Maas RL, Chuong CM
'Cyclic alopecia' in Msx2 mutants: defects in hair cycling and hair shaft differentiation.
Development 130: 379-89 (2003)
PM ID: 12466204
212: Karanjawala ZE, Adachi N, Irvine RA, Oh EK, Shibata D, Schwarz K, Hsieh CL, Lieber MR
The embryonic lethality in DNA ligase IV-deficient mice is rescued by deletion of Ku: implications for unifying the heterogeneous phenotypes of NHEJ mutants.
DNA Repair (Amst) 1: 1017-26 (2003)
PM ID: 12531011
213: Karanjawala ZE, Hsieh CL, Lieber MR
Overexpression of Cu/Zn superoxide dismutase is lethal for mice lacking double-strand break repair.
DNA Repair (Amst) 2: 285-94 (2003)
PM ID: 12547391
214: Henry G, Li W, Garner WL, Woodley DT
Migration of human keratinocytes in plasma and serum and wound re-epithelialisation.
Lancet 361: 574-6 (2003)
PM ID: 12598145
215: Kaartinen V, Warburton D
Fibrillin controls TGF-beta activation.
Nat Genet 33: 331-2 (2003)
PM ID: 12610545
216: Cheng JC, Matsen CB, Gonzales FA, Ye W, Greer S, Marquez VE, Jones PA, Selker EU
Inhibition of DNA methylation and reactivation of silenced genes by zebularine.
J Natl Cancer Inst 95: 399-409 (2003)
PM ID: 12618505
217: Reddy RK, Mao C, Baumeister P, Austin RC, Kaufman RJ, Lee AS
Endoplasmic reticulum chaperone protein GRP78 protects cells from apoptosis induced by topoisomerase inhibitors: role of ATP binding site in suppression of caspase-7 activation.
J Biol Chem 278: 20915-24 (2003)
PM ID: 12665508
218: Crowe DL, Hacia JG, Hsieh CL, Sinha UK, Rice H
Molecular pathology of head and neck cancer.
Histol Histopathol 17: 909-14 (2003)
PM ID: 12168802
219: Jiang X, Choudhary B, Merki E, Chien KR, Maxson RE, Sucov HM
Normal fate and altered function of the cardiac neural crest cell lineage in retinoic acid receptor mutant embryos.
Mech Dev 117: 115-22 (2003)
PM ID: 12204252
220: Jitpukdeebodintra S, Chai Y, Snead ML
Developmental patterning of the circumvallate papilla.
Int J Dev Biol 46: 755-63 (2003)
PM ID: 12216988
221: Huang EY, Wu H, Island ER, Chong SS, Warburton D, Anderson KD, Tuan TL
Differential expression of urokinase-type plasminogen activator and plasminogen activator inhibitor-1 in early and late gestational mouse skin and skin wounds.
Wound Repair Regen 10: 387-96 (2003)
PM ID: 12453143
222: Tsien F, Fiala ES, Youn B, Long TI, Laird PW, Weissbecker K, Ehrlich M
Prolonged culture of normal chorionic villus cells yields ICF syndrome-like chromatin decondensation and rearrangements.
Cytogenet Genome Res 98: 13-21 (2003)
PM ID: 12584436
223: Gago-Dominguez M, Bell DA, Watson MA, Yuan JM, Castelao JE, Hein DW, Chan KK, Coetzee GA, Ross RK, Yu MC
Permanent hair dyes and bladder cancer: risk modification by cytochrome P4501A2 and N-acetyltransferases 1 and 2.
Carcinogenesis 24: 483-9 (2003)
PM ID: 12663508
224: Chen M, Li W, Fan J, Kasahara N, Woodley DT
An efficient gene transduction system for studying gene function in primary human dermal fibroblasts and epidermal keratinocytes.
Clin Exp Dermatol 28: 193-9 (2003)
PM ID: 12653712
225: Laird PW
The power and the promise of DNA methylation markers.
Nat Rev Cancer 3: 253-66 (2003)
PM ID: 12671664
226: Yu KJ, Chedin F, Hsieh CL, Wilson TE, Lieber MR
R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells.
Nat Immunol 4: 442-51 (2003)
PM ID: 12679812
227: Johnson SA, Dubeau L, Kawalek M, Dervan A, Schönthal AH, Dang CV, Johnson DL
Increased expression of TATA-binding protein, the central transcription factor, can contribute to oncogenesis.
Mol Cell Biol 23: 3043-51 (2003)
PM ID: 12697807 PMC153209
228: Cottrell SE, Laird PW
Sensitive detection of DNA methylation.
Ann N Y Acad Sci 983: 120-30 (2003)
PM ID: 12724217
229: Jones PA
Epigenetics in carcinogenesis and cancer prevention.
Ann N Y Acad Sci 983: 213-9 (2003)
PM ID: 12724226
230: Reddi K, Phagoo SB, Anderson KD, Warburton D
Burkholderia cepacia-induced IL-8 gene expression in an alveolar epithelial cell line: signaling through CD14 and mitogen-activated protein kinase.
Pediatr Res 54: 297-305 (2003)
PM ID: 12761358
231: Shibata D
Molecular tumour clocks and colorectal cancer: seeing the unseen.
Pathology 34: 534-40 (2003)
PM ID: 12555991
232: Clark PE, Irvine RA, Coetzee GA
The androgen receptor CAG repeat and prostate cancer risk.
Methods Mol Med 81: 255-66 (2003)
PM ID: 12725125
233: Chai Y, Ito Y, Han J
TGF-beta signaling and its functional significance in regulating the fate of cranial neural crest cells.
Crit Rev Oral Biol Med 14: 78-88 (2003)
PM ID: 12764071
234: Wu LY, Li M, Hinton DR, Guo L, Jiang S, Wang JT, Zeng A, Xie JB, Snead ML, Shuler CF, Maxson RE, Liu YH
Microphthalmia resulting from MSX2-induced apoptosis in the optic vesicle.
Invest Ophthalmol Vis Sci 44: 2404-12 (2003)
PM ID: 12766037
235: Warburton D, Bellusci S, Del Moral PM, Kaartinen V, Lee MS, Tefft D, Shi W
Growth factor signaling in lung morphogenetic centers: automaticity, stereotypy and symmetry.
Respir Res 4: 5 (2003)
PM ID: 12818006 PMC185249
236: Crighton D, Woiwode A, Zhang C, Mandavia N, Morton JP, Warnock LJ, Milner J, White RJ, Johnson DL
p53 represses RNA polymerase III transcription by targeting TBP and inhibiting promoter occupancy by TFIIIB.
EMBO J 22: 2810-20 (2003)
PM ID: 12773395 PMC156762
237: Hsieh CL, Jones PA
Meddling with methylation.
Nat Cell Biol 5: 502-4 (2003)
PM ID: 12776125
238: Uhlmann K, Rohde K, Zeller C, Szymas J, Vogel S, Marczinek K, Thiel G, Nürnberg P, Laird PW
Distinct methylation profiles of glioma subtypes.
Int J Cancer 106: 52-9 (2003)
PM ID: 12794756
239: Luo S, Baumeister P, Yang S, Abcouwer SF, Lee AS
Induction of Grp78/BiP by translational block: activation of the Grp78 promoter by ATF4 through and upstream ATF/CRE site independent of the endoplasmic reticulum stress elements.
J Biol Chem 278: 37375-85 (2003)
PM ID: 12871976
240: Gonzalgo ML, Jones PA
Quantitative methylation analysis using methylation-sensitive single-nucleotide primer extension (Ms-SNuPE).
Methods 27: 128-33 (2003)
PM ID: 12095270
241: Liang G, Gonzalgo ML, Salem C, Jones PA
Identification of DNA methylation differences during tumorigenesis by methylation-sensitive arbitrarily primed polymerase chain reaction.
Methods 27: 150-5 (2003)
PM ID: 12095274
242: Siegmund KD, Laird PW
Analysis of complex methylation data.
Methods 27: 170-8 (2003)
PM ID: 12095277
243: Jones PA
An epigenetic approach for finding tumor suppressors.
Cell Cycle 2: 25-6 (2003)
PM ID: 12695681
244: Zheng YT, Li JZ, Johnson DL, Ou JH
Regulation of hepatitis B virus replication by the ras-mitogen-activated protein kinase signaling pathway.
J Virol 77: 7707-12 (2003)
PM ID: 12829809 PMC161924
245: Wilson A, Wall MJ, Maxson R, Mattox K
The pulmonary hilum twist as a thoracic damage control procedure.
Am J Surg 186: 49-52 (2003)
PM ID: 12842749
246: Matsukura S, Jones PA, Takai D
Establishment of conditional vectors for hairpin siRNA knockdowns.
Nucleic Acids Res 31: e77 (2003)
PM ID: 12888529 PMC169962
247: Cortessis VK, Siegmund KD, Xue S, Ross RK, Yu MC
A case-control study of cyclin D1 CCND1 870A-->G polymorphism and bladder cancer.
Carcinogenesis 24: 1645-50 (2003)
PM ID: 12896908
248: Park-Lee S, Kim SY, Laird-Offringa IA
Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA.
J Biol Chem 278: 39801-8 (2003)
PM ID: 12900401
249: Reddy RK, Buckley S, Doerken M, Barsky LW, Weinberg KI, Anderson KD, Warburton D, Driscoll B
Isolation of a putative progenitor subpopulation of alveolar epithelial type 2 cells.
Am J Physiol Lung Cell Mol Physiol 286: L658-67 (2003)
PM ID: 12922980
250: Zhou H, Luo MP, Schönthal AH, Pike MC, Stallcup MR, Blumenthal M, Zheng W, Dubeau L
Effect of reproductive hormones on ovarian epithelial tumors: I. Effect on cell cycle activity.
Cancer Biol Ther 1: 300-6 (2003)
PM ID: 12432283
251: Chai Y, Slavkin HC
Prospects for tooth regeneration in the 21st century: a perspective.
Microsc Res Tech 60: 469-79 (2003)
PM ID: 12619122
252: Jia L, Kim J, Shen HC, Clark PE, Tilley WD, Coetzee GA
Androgen receptor activity at the prostate specific antigen locus: steroidal and non-steroidal mechanisms.
Mol Cancer Res 1: 385-92 (2003)
PM ID: 12651911
253: Tagawa ST, Lee PJ, Snively J, Boswell WD, Ounpraseuth S, Lee SY, Hickingbottom B, Smith JR, Johnson DL, Weber JS
Phase I study of intranodal delivery of a plasmid DNA vaccine for patients with Stage IV melanoma.
Cancer 98: 144-54 (2003)
PM ID: 12833467
254: Han J, Ito Y, Yeo JY, Sucov HM, Maas R, Chai Y
Cranial neural crest-derived mesenchymal proliferation is regulated by Msx1-mediated p19(INK4d) expression during odontogenesis.
Dev Biol 261: 183-96 (2003)
PM ID: 12941628
255: Stallcup MR, Kim JH, Teyssier C, Lee YH, Ma H, Chen DT
The roles of protein-protein interactions and protein methylation in transcriptional activation by nuclear receptors and their coactivators.
J Steroid Biochem Mol Biol 85: 139-45 (2003)
PM ID: 12943698
256: Chuong CM, Wu PE, Zhang FC, Xu X, Yu MC, Widelitz RB, Jiang TX, Hou L
Adaptation to the sky: Defining the feather with integument fossils from mesozoic China and experimental evidence from molecular laboratories.
J Exp Zool B Mol Dev Evol 298: 42-56 (2003)
PM ID: 12949768
257: Widelitz RB, Jiang TX, Yu MC, Shen T, Shen JY, Wu PE, Yu ZC, Chuong CM
Molecular biology of feather morphogenesis: a testable model for evo-devo research.
J Exp Zool B Mol Dev Evol 298: 109-22 (2003)
PM ID: 12949772
258: Li W, Fan J, Chen M, Guan S, Sawcer D, Bokoch GM, Woodley DT
Mechanism of human dermal fibroblast migration driven by type I collagen and platelet-derived growth factor-BB.
Mol Biol Cell 15: 294-309 (2003)
PM ID: 14595114 PMC307548
259: Xu X, Jeong L, Han J, Ito Y, Bringas P, Chai Y
Developmental expression of Smad1-7 suggests critical function of TGF-beta/BMP signaling in regulating epithelial-mesenchymal interaction during tooth morphogenesis.
Int J Dev Biol 47: 31-9 (2003)
PM ID: 12653249
260: Wang H, An W, Cao R, Xia L, Erdjument-Bromage H, Chatton B, Tempst P, Roeder RG, Zhang Y
mAM facilitates conversion by ESET of dimethyl to trimethyl lysine 9 of histone H3 to cause transcriptional repression.
Mol Cell 12: 475-87 (2003)
PM ID: 14536086
261: Li HY, Kim JH, Koh SS, Stallcup MR
Synergistic effects of coactivators GRIP1 and beta-catenin on gene activation: cross-talk between androgen receptor and Wnt signaling pathways.
J Biol Chem 279: 4212-20 (2003)
PM ID: 14638683
262: Zhang Y, Wang S, Song Y, Han J, Chai Y, Chen Y
Timing of odontogenic neural crest cell migration and tooth-forming capability in mice.
Dev Dyn 226: 713-8 (2003)
PM ID: 12666208
263: Ito Y, Yeo JY, Chytil A, Han J, Bringas P, Nakajima A, Shuler CF, Moses HL, Chai Y
Conditional inactivation of Tgfbr2 in cranial neural crest causes cleft palate and calvaria defects.
Development 130: 5269-80 (2003)
PM ID: 12975342
264: Chung LW, Hsieh CL, Law A, Sung SY, Gardner TA, Egawa M, Matsubara S, Zhau HE
New targets for therapy in prostate cancer: modulation of stromal-epithelial interactions.
Urology 62: 44-54 (2003)
PM ID: 14607217
265: Ma H, Shang Y, Lee DY, Stallcup MR
Study of nuclear receptor-induced transcription complex assembly and histone modification by chromatin immunoprecipitation assays.
Methods Enzymol 364: 284-96 (2003)
PM ID: 14631851
266: Takai D, Jones PA
Origins of bidirectional promoters: computational analyses of intergenic distance in the human genome.
Mol Biol Evol 21: 463-7 (2003)
PM ID: 14660682
267: Hong M, Luo S, Baumeister P, Huang JM, Gogia RK, Li M, Lee AS
Underglycosylation of ATF6 as a novel sensing mechanism for activation of the unfolded protein response.
J Biol Chem 279: 11354-63 (2003)
PM ID: 14699159
268: Flores-Delgado G, Anderson KD, Warburton D
Nongenomic estrogen action regulates tyrosine phosphatase activity and tuberin stability.
Mol Cell Endocrinol 199: 143-51 (2004)
PM ID: 12581886
269: Gauldie J, Galt T, Bonniaud P, Robbins C, Kelly M, Warburton D
Transfer of the active form of transforming growth factor-beta 1 gene to newborn rat lung induces changes consistent with bronchopulmonary dysplasia.
Am J Pathol 163: 2575-84 (2004)
PM ID: 14633629
270: Pagliarulo V, George B, Beil SJ, Groshen S, Laird PW, Cai J, Willey J, Cote RJ, Datar RH
Sensitivity and reproducibility of standardized-competitive RT-PCR for transcript quantification and its comparison with real time RT-PCR.
Mol Cancer 3: 5 (2004)
PM ID: 14741054 PMC344741
271: Ishii M, Merrill AE, Chan YS, Gitelman I, Rice DP, Sucov HM, Maxson RE
Msx2 and Twist cooperatively control the development of the neural crest-derived skeletogenic mesenchyme of the murine skull vault.
Development 130: 6131-42 (2004)
PM ID: 14597577
272: Land KM, Delgadillo-Correa MG, Tachezy J, Vanacova S, Hsieh CL, Sutak R, Johnson PJ
Targeted gene replacement of a ferredoxin gene in Trichomonas vaginalis does not lead to metronidazole resistance.
Mol Microbiol 51: 115-22 (2004)
PM ID: 14651615
273: Kim JH, Li HY, Stallcup MR
CoCoA, a nuclear receptor coactivator which acts through an N-terminal activation domain of p160 coactivators.
Mol Cell 12: 1537-49 (2004)
PM ID: 14690606
274: Rice JC, Briggs SD, Ueberheide B, Barber CM, Shabanowitz J, Hunt DF, Shinkai Y, Allis CD
Histone methyltransferases direct different degrees of methylation to define distinct chromatin domains.
Mol Cell 12: 1591-8 (2004)
PM ID: 14690610
275: Cheng JC, Weisenberger DJ, Gonzales FA, Liang G, Xu GL, Hu YG, Marquez VE, Jones PA
Continuous zebularine treatment effectively sustains demethylation in human bladder cancer cells.
Mol Cell Biol 24: 1270-8 (2004)
PM ID: 14729971 PMC321446
276: Zeng LF, Lu M, Mori K, Luo S, Lee AS, Zhu Y, Shyy JY
ATF6 modulates SREBP2-mediated lipogenesis.
EMBO J 23: 950-8 (2004)
PM ID: 14765107 PMC381012
277: Ding W, Bellusci S, Shi W, Warburton D
Genomic structure and promoter characterization of the human Sprouty4 gene, a novel regulator of lung morphogenesis.
Am J Physiol Lung Cell Mol Physiol 287: L52-9 (2004)
PM ID: 14977631
278: Cui XM, Chai Y, Chen J, Yamamoto T, Ito Y, Bringas P, Shuler CF
TGF-beta3-dependent SMAD2 phosphorylation and inhibition of MEE proliferation during palatal fusion.
Dev Dyn 227: 387-94 (2004)
PM ID: 12815624
279: Shi W, Chen HM, Sun J, Chen CS, Zhao J, Wang YL, Anderson KD, Warburton D
Overexpression of Smurf1 negatively regulates mouse embryonic lung branching morphogenesis by specifically reducing Smad1 and Smad5 proteins.
Am J Physiol Lung Cell Mol Physiol 286: L293-300 (2004)
PM ID: 14711801
280: Suksaweang S, Lin CM, Jiang TX, Hughes MW, Widelitz RB, Chuong CM
Morphogenesis of chicken liver: identification of localized growth zones and the role of beta-catenin/Wnt in size regulation.
Dev Biol 266: 109-22 (2004)
PM ID: 14729482
281: Raghavan SC, Swanson PC, Wu X, Hsieh CL, Lieber MR
A non-B-DNA structure at the Bcl-2 major breakpoint region is cleaved by the RAG complex.
Nature 428: 88-93 (2004)
PM ID: 14999286
282: Thompson PR, Wang D, Wang L, Fulco M, Pediconi N, Zhang D, An W, Ge Q, Roeder RG, Wong J, Levrero M, Sartorelli V, Cotter RJ, Cole PA
Regulation of the p300 HAT domain via a novel activation loop.
Nat Struct Mol Biol 11: 308-15 (2004)
PM ID: 15004546
283: Siegmund KD, Laird PW, Laird-Offringa IA
A comparison of cluster analysis methods using DNA methylation data.
Bioinformatics 20: 1896-904 (2004)
PM ID: 15044245
284: Lee YH, Campbell HD, Stallcup MR
Developmentally essential protein flightless I is a nuclear receptor coactivator with actin binding activity.
Mol Cell Biol 24: 2103-17 (2004)
PM ID: 14966289 PMC350567
285: An W, Roeder RG
Reconstitution and transcriptional analysis of chromatin in vitro.
Methods Enzymol 377: 460-74 (2004)
PM ID: 14979045
286: Johansson C, Finger LD, Trantirek L, Mueller TD, Kim SY, Laird-Offringa IA, Feigon J
Solution structure of the complex formed by the two N-terminal RNA-binding domains of nucleolin and a pre-rRNA target.
J Mol Biol 337: 799-816 (2004)
PM ID: 15033352
287: Calabrese P, Tavaré S, Shibata D
Pretumor progression: clonal evolution of human stem cell populations.
Am J Pathol 164: 1337-46 (2004)
PM ID: 15039221 PMC1615336
288: Kim KM, Calabrese P, Tavaré S, Shibata D
Enhanced stem cell survival in familial adenomatous polyposis.
Am J Pathol 164: 1369-77 (2004)
PM ID: 15039224 PMC1615334
289: Calabrese P, Tsao JL, Yatabe Y, Salovaara R, Mecklin JP, Järvinen HJ, Aaltonen LA, Tavaré S, Shibata D
Colorectal pretumor progression before and after loss of DNA mismatch repair.
Am J Pathol 164: 1447-53 (2004)
PM ID: 15039232 PMC1615342
290: Veal N, Hsieh CL, Xiong S, Mato JM, Lu SC, Tsukamoto H
Inhibition of lipopolysaccharide-stimulated TNF-alpha promoter activity by S-adenosylmethionine and 5'-methylthioadenosine.
Am J Physiol Gastrointest Liver Physiol 287: G352-62 (2004)
PM ID: 15064230
291: Johnson SA, Dubeau L, White RJ, Johnson DL
The TATA-binding protein as a regulator of cellular transformation.
Cell Cycle 2: 442-4 (2004)
PM ID: 12963838
292: Warburton D, Bellusci S
The molecular genetics of lung morphogenesis and injury repair.
Paediatr Respir Rev 5 Suppl A: S283-7 (2004)
PM ID: 14980285
293: Jia L, Choong CS, Ricciardelli C, Kim J, Tilley WD, Coetzee GA
Androgen receptor signaling: mechanism of interleukin-6 inhibition.
Cancer Res 64: 2619-26 (2004)
PM ID: 15059919
294: Liang G, Lin JC, Wei V, Yoo CB, Cheng JC, Nguyen CT, Weisenberger DJ, Egger G, Takai D, Gonzales FA, Jones PA
Distinct localization of histone H3 acetylation and H3-K4 methylation to the transcription start sites in the human genome.
Proc Natl Acad Sci U S A 101: 7357-62 (2004)
PM ID: 15123803 PMC409923
295: Kim KJ, Fandy TE, Lee VH, Ann DK, Borok Z, Crandall ED
Net absorption of IgG via FcRn-mediated transcytosis across rat alveolar epithelial cell monolayers.
Am J Physiol Lung Cell Mol Physiol 287: L616-22 (2004)
PM ID: 15169676
296: Kim J, Jia L, Tilley WD, Coetzee GA
Dynamic methylation of histone H3 at lysine 4 in transcriptional regulation by the androgen receptor.
Nucleic Acids Res 31: 6741-7 (2004)
PM ID: 14627807 PMC290276
297: Castelao JE, Yuan JM, Gago-Dominguez M, Skipper PL, Tannenbaum SR, Chan KK, Watson MA, Bell DA, Coetzee GA, Ross RK, Yu MC
Carotenoids/vitamin C and smoking-related bladder cancer.
Int J Cancer 110: 417-23 (2004)
PM ID: 15095308
298: Xie Y, Yang HT, Cunanan C, Okamoto K, Shibata D, Pan J, Barnes DE, Lindahl T, McIlhatton M, Fishel R, Miller JH
Deficiencies in mouse Myh and Ogg1 result in tumor predisposition and G to T mutations in codon 12 of the K-ras oncogene in lung tumors.
Cancer Res 64: 3096-102 (2004)
PM ID: 15126346
299: Egger G, Liang G, Aparicio AM, Jones PA
Epigenetics in human disease and prospects for epigenetic therapy.
Nature 429: 457-63 (2004)
PM ID: 15164071
300: Zhong S, Zhang C, Johnson DL
Epidermal growth factor enhances cellular TATA binding protein levels and induces RNA polymerase I- and III-dependent gene activity.
Mol Cell Biol 24: 5119-29 (2004)
PM ID: 15169879 PMC419868
301: Woodley DT, Keene DR, Atha T, Huang Y, Lipman K, Li W, Chen M
Injection of recombinant human type VII collagen restores collagen function in dystrophic epidermolysis bullosa.
Nat Med 10: 693-5 (2004)
PM ID: 15195089
302: Buchanan G, Yang MH, Cheong A, Harris JM, Irvine RA, Lambert PF, Moore NL, Raynor M, Neufing PJ, Coetzee GA, Tilley WD
Structural and functional consequences of glutamine tract variation in the androgen receptor.
Hum Mol Genet 13: 1677-92 (2004)
PM ID: 15198988
303: Takai D, Jones PA
The CpG island searcher: a new WWW resource.
In Silico Biol 3: 235-40 (2004)
PM ID: 12954087
304: Karanjawala ZE, Hinton DR, Oh E, Hsieh CL, Lieber MR
Developmental retinal apoptosis in Ku86-/- mice.
DNA Repair (Amst) 2: 1429-34 (2004)
PM ID: 14642570
305: Widschwendter M, Siegmund KD, Müller HM, Fiegl H, Marth C, Müller-Holzner E, Jones PA, Laird PW
Association of breast cancer DNA methylation profiles with hormone receptor status and response to tamoxifen.
Cancer Res 64: 3807-13 (2004)
PM ID: 15172987
306: Chang CH, Yu MC, Wu PE, Jiang TX, Yu HS, Widelitz RB, Chuong CM
Sculpting skin appendages out of epidermal layers via temporally and spatially regulated apoptotic events.
J Invest Dermatol 122: 1348-55 (2004)
PM ID: 15175023
307: An W, Kim J, Roeder RG
Ordered cooperative functions of PRMT1, p300, and CARM1 in transcriptional activation by p53.
Cell 117: 735-48 (2004)
PM ID: 15186775
308: Chatterjee SJ, George B, Goebell PJ, Alavi-Tafreshi M, Shi SR, Fung YK, Jones PA, Cordon-Cardo C, Datar RH, Cote RJ
Hyperphosphorylation of pRb: a mechanism for RB tumour suppressor pathway inactivation in bladder cancer.
J Pathol 203: 762-70 (2004)
PM ID: 15221935
309: Widschwendter M, Jiang G, Woods C, Müller HM, Fiegl H, Goebel G, Marth C, Müller-Holzner E, Zeimet AG, Laird PW, Ehrlich M
DNA hypomethylation and ovarian cancer biology.
Cancer Res 64: 4472-80 (2004)
PM ID: 15231656
310: Widelitz RB
Regulating the regulators: routing the Wnt-beta-catenin--Lef signals.
J Invest Dermatol 123: VIII-X (2004)
PM ID: 15245452
311: Buchanan G, Craft PS, Yang MH, Cheong A, Prescott J, Jia L, Coetzee GA, Tilley WD
PC-3 cells with enhanced androgen receptor signaling: a model for clonal selection in prostate cancer.
Prostate 60: 352-66 (2004)
PM ID: 15264248
312: Hsieh CL, Gardner TA, Miao L, Balian G, Chung LW
Cotargeting tumor and stroma in a novel chimeric tumor model involving the growth of both human prostate cancer and bone stromal cells.
Cancer Gene Ther 11: 148-55 (2004)
PM ID: 14695756
313: Weisenberger DJ, Velicescu M, Cheng JC, Gonzales FA, Liang G, Jones PA
Role of the DNA methyltransferase variant DNMT3b3 in DNA methylation.
Mol Cancer Res 2: 62-72 (2004)
PM ID: 14757847
314: Wang Y, Wysocka J, Sayegh J, Lee YH, Perlin JR, Leonelli L, Sonbuchner LS, McDonald CH, Cook RG, Dou Y, Roeder RG, Clarke S, Stallcup MR, Allis CD, Coonrod SA
Human PAD4 regulates histone arginine methylation levels via demethylimination.
Science 306: 279-83 (2004)
PM ID: 15345777
315: Chen SP, Zhou B, Willis BC, Sandoval AJ, Liebler JM, Kim KJ, Ann DK, Crandall ED, Borok Z
Effects of transdifferentiation and EGF on claudin isoform expression in alveolar epithelial cells.
J Appl Physiol 98: 322-8 (2004)
PM ID: 15361518
316: Angelov D, Verdel A, An W, Bondarenko V, Hans F, Doyen CM, Studitsky VM, Hamiche A, Roeder RG, Bouvet P, Dimitrov S
SWI/SNF remodeling and p300-dependent transcription of histone variant H2ABbd nucleosomal arrays.
EMBO J 23: 3815-24 (2004)
PM ID: 15372075 PMC522799
317: Kim JH, Stallcup MR
Role of the coiled-coil coactivator (CoCoA) in aryl hydrocarbon receptor-mediated transcription.
J Biol Chem 279: 49842-8 (2004)
PM ID: 15383530
318: Marchevsky AM, Tsou JA, Laird-Offringa IA
Classification of individual lung cancer cell lines based on DNA methylation markers: use of linear discriminant analysis and artificial neural networks.
J Mol Diagn 6: 28-36 (2004)
PM ID: 14736824 PMC1867460
319: Chang CH, Jiang TX, Lin CM, Burrus LW, Chuong CM, Widelitz RB
Distinct Wnt members regulate the hierarchical morphogenesis of skin regions (spinal tract) and individual feathers.
Mech Dev 121: 157-71 (2004)
PM ID: 15037317
320: Cheng JC, Yoo CB, Weisenberger DJ, Chuang JC, Wozniak C, Liang G, Marquez VE, Greer S, Orntoft TF, Thykjaer T, Jones PA
Preferential response of cancer cells to zebularine.
Cancer Cell 6: 151-8 (2004)
PM ID: 15324698
321: Wu PE, Jiang TX, Suksaweang S, Widelitz RB, Chuong CM
Molecular shaping of the beak.
Science 305: 1465-6 (2004)
PM ID: 15353803
322: Pandey J, Warburton D
Knock-on effect of anthrax lethal toxin on macrophages potentiates cytotoxicity to endothelial cells.
Microbes Infect 6: 835-43 (2004)
PM ID: 15374005
323: Lee DY, Teyssier C, Strahl BD, Stallcup MR
Role of protein methylation in regulation of transcription.
Endocr Rev 26: 147-70 (2004)
PM ID: 15479858
324: Li W, Henry G, Fan J, Bandyopadhyay B, Pang K, Garner WL, Chen M, Woodley DT
Signals that initiate, augment, and provide directionality for human keratinocyte motility.
J Invest Dermatol 123: 622-33 (2004)
PM ID: 15373765
325: Kim MH, Trinh BN, Long TI, Oghamian S, Laird PW
Dnmt1 deficiency leads to enhanced microsatellite instability in mouse embryonic stem cells.
Nucleic Acids Res 32: 5742-9 (2004)
PM ID: 15509869 PMC528797
326: Dong D, Dubeau L, Bading JR, Nguyen K, Luna M, Yu H, Gazit-Bornstein G, Gordon EM, Gomer CJ, Hall FL, Gambhir SS, Lee AS
Spontaneous and controllable activation of suicide gene expression driven by the stress-inducible grp78 promoter resulting in eradication of sizable human tumors.
Hum Gene Ther 15: 553-61 (2004)
PM ID: 15212714
327: Jiang TX, Widelitz RB, Shen WM, Will P, Wu DY, Lin CM, Jung HS, Chuong CM
Integument pattern formation involves genetic and epigenetic controls: feather arrays simulated by digital hormone models.
Int J Dev Biol 48: 117-35 (2004)
PM ID: 15272377
328: Yu MC, Yue Z, Wu PE, Wu DY, Mayer JA, Medina M, Widelitz RB, Jiang TX, Chuong CM
The biology of feather follicles.
Int J Dev Biol 48: 181-91 (2004)
PM ID: 15272383
329: Wu PE, Hou L, Plikus MV, Hughes M, Scehnet JS, Suksaweang S, Widelitz RB, Jiang TX, Chuong CM
Evo-Devo of amniote integuments and appendages.
Int J Dev Biol 48: 249-70 (2004)
PM ID: 15272390
330: Brugger SM, Merrill AE, Torres-Vazquez J, Wu N, Ting MC, Cho JY, Dobias SL, Yi SE, Lyons K, Bell JR, Arora K, Warrior R, Maxson R
A phylogenetically conserved cis-regulatory module in the Msx2 promoter is sufficient for BMP-dependent transcription in murine and Drosophila embryos.
Development 131: 5153-65 (2004)
PM ID: 15459107
331: Li YJ, Stallcup MR, Lai MM
Hepatitis delta virus antigen is methylated at arginine residues, and methylation regulates subcellular localization and RNA replication.
J Virol 78: 13325-34 (2004)
PM ID: 15542683 PMC524986
332: Buckley S, Barsky LW, Weinberg KI, Warburton D
In vivo inosine protects alveolar epithelial type 2 cells against hyperoxia-induced DNA damage through MAP kinase signaling.
Am J Physiol Lung Cell Mol Physiol 288: L569-75 (2004)
PM ID: 15579626
333: Chen HM, Sun J, Buckley S, Chen CS, Warburton D, Wang XF, Shi W
Abnormal mouse lung alveolarization caused by Smad3 deficiency is a developmental antecedent of centrilobular emphysema.
Am J Physiol Lung Cell Mol Physiol 288: L683-91 (2004)
PM ID: 15591413
334: Quach N, Goodman MF, Shibata D
In vitro mutation artifacts after formalin fixation and error prone translesion synthesis during PCR.
BMC Clin Pathol 4: 1 (2004)
PM ID: 15028125
335: Kim J, Coetzee GA
Prostate specific antigen gene regulation by androgen receptor.
J Cell Biochem 93: 233-41 (2005)
PM ID: 15368351
336: Mao C, Dong D, Little E, Luo S, Lee AS
Transgenic mouse model for monitoring endoplasmic reticulum stress in vivo.
Nat Med 10: 1013-4; author reply 1014 (2005)
PM ID: 15459690
337: Ma Y, Lu H, Tippin B, Goodman MF, Shimazaki N, Koiwai O, Hsieh CL, Schwarz K, Lieber MR
A biochemically defined system for mammalian nonhomologous DNA end joining.
Mol Cell 16: 701-13 (2005)
PM ID: 15574326
338: Irvine RA, Adachi N, Shibata DK, Cassell GD, Yu KJ, Karanjawala ZE, Hsieh CL, Lieber MR
Generation and characterization of endonuclease G null mice.
Mol Cell Biol 25: 294-302 (2005)
PM ID: 15601850 PMC538798
339: Hong M, Lin MY, Huang JM, Baumeister P, Hakre S, Roy AL, Lee AS
Transcriptional regulation of the Grp78 promoter by endoplasmic reticulum stress: role of TFII-I and its tyrosine phosphorylation.
J Biol Chem 280: 16821-8 (2005)
PM ID: 15664986
340: Chen CS, Chen HM, Sun J, Bringas P, Chen Y, Warburton D, Shi W
Smad1 expression and function during mouse embryonic lung branching morphogenesis.
Am J Physiol Lung Cell Mol Physiol 288: L1033-9 (2005)
PM ID: 15681399
341: Hong M, Li M, Mao C, Lee AS
Endoplasmic reticulum stress triggers an acute proteasome-dependent degradation of ATF6.
J Cell Biochem 92: 723-32 (2005)
PM ID: 15211570
342: Guerrero-Santoro J, Yang L, Stallcup MR, DeFranco DB
Distinct LIM domains of Hic-5/ARA55 are required for nuclear matrix targeting and glucocorticoid receptor binding and coactivation.
J Cell Biochem 92: 810-9 (2005)
PM ID: 15211577
343: Warburton D, Berberich MA, Driscoll B
Stem/progenitor cells in lung morphogenesis, repair, and regeneration.
Curr Top Dev Biol 64: 1-16 (2005)
PM ID: 15563941
344: Lee YH, Coonrod SA, Kraus WL, Jelinek MA, Stallcup MR
Regulation of coactivator complex assembly and function by protein arginine methylation and demethylimination.
Proc Natl Acad Sci U S A 102: 3611-6 (2005)
PM ID: 15731352 PMC553305
345: Li W, Fan J, Chen M, Woodley DT
Mechanisms of human skin cell motility.
Histol Histopathol 19: 1311-24 (2005)
PM ID: 15375774
346: De Langhe SP, Sala FG, Del Moral PM, Fairbanks TJ, Yamada KM, Warburton D, Burns RC, Bellusci S
Dickkopf-1 (DKK1) reveals that fibronectin is a major target of Wnt signaling in branching morphogenesis of the mouse embryonic lung.
Dev Biol 277: 316-31 (2005)
PM ID: 15617677
347: Theisen J, Peters JH, Fein M, Hughes M, Hagen JA, DeMeester SR, DeMeester TR, Laird PW
The mutagenic potential of duodenoesophageal reflux.
Ann Surg 241: 63-8 (2005)
PM ID: 15621992 PMC1356847
348: Sasaki T, Ito Y, Xu X, Han J, Bringas P, Maeda T, Slavkin HC, Grosschedl R, Chai Y
LEF1 is a critical epithelial survival factor during tooth morphogenesis.
Dev Biol 278: 130-43 (2005)
PM ID: 15649466
349: Cui XM, Shiomi N, Chen J, Saito T, Yamamoto T, Ito Y, Bringas P, Chai Y, Shuler CF
Overexpression of Smad2 in Tgf-beta3-null mutant mice rescues cleft palate.
Dev Biol 278: 193-202 (2005)
PM ID: 15649471
350: Phagoo SB, Reddi K, Silvallana BJ, Leeb-Lundberg LM, Warburton D
Infection-induced kinin B1 receptors in human pulmonary fibroblasts: role of intact pathogens and p38 mitogen-activated protein kinase-dependent signaling.
J Pharmacol Exp Ther 313: 1231-8 (2005)
PM ID: 15743925
351: Cote RJ, Laird PW, Datar RH
Promoter hypermethylation: a new therapeutic target emerges in urothelial cancer.
J Clin Oncol 23: 2879-81 (2005)
PM ID: 15753457
352: Hsieh CL
The de novo methylation activity of Dnmt3a is distinctly different than that of Dnmt1.
BMC Biochem 6: 6 (2005)
PM ID: 15799776 PMC1084342
353: Yoo CB, Cheng JC, Jones PA
Zebularine: a new drug for epigenetic therapy.
Biochem Soc Trans 32: 910-2 (2005)
PM ID: 15506921
354: Tsou JA, Shen LY, Siegmund KD, Long TI, Laird PW, Seneviratne CK, Koss MN, Pass HI, Hagen JA, Laird-Offringa IA
Distinct DNA methylation profiles in malignant mesothelioma, lung adenocarcinoma, and non-tumor lung.
Lung Cancer 47: 193-204 (2005)
PM ID: 15639718
355: Warburton D, Bellusci S, De Langhe S, Del Moral PM, Fleury V, Mailleux A, Tefft D, Unbekandt M, Wang KS, Shi W
Molecular mechanisms of early lung specification and branching morphogenesis.
Pediatr Res 57: 26R-37R (2005)
PM ID: 15817505
356: Raghavan SC, Chastain P, Lee JS, Hegde BG, Houston SI, Langen R, Hsieh CL, Haworth IS, Lieber MR
Evidence for a triplex DNA conformation at the bcl-2 major breakpoint region of the t(14;18) translocation.
J Biol Chem 280: 22749-60 (2005)
PM ID: 15840562
357: Lindor NM, Rabe K, Petersen GM, Haile R, Casey GR, Baron JA, Gallinger S, Bapat B, Aronson M, Hopper JL, Jass J, LeMarchand L, Grove J, Potter JD, Newcomb P, Terdiman JP, Conrad P, Moslein G, Goldberg R, Ziogas A, Anton-Culver H, de Andrade M, Siegmund KD, Thibodeau SN, Boardman LA, Seminara D
Lower cancer incidence in Amsterdam-I criteria families without mismatch repair deficiency: familial colorectal cancer type X.
JAMA 293: 1979-85 (2005)
PM ID: 15855431
358: Friedrich MG, Weisenberger DJ, Cheng JC, Chandrasoma S, Siegmund KD, Gonzalgo ML, Toma MI, Huland H, Yoo CB, Tsai YC, Nichols PW, Bochner BH, Jones PA, Liang G
Detection of methylated apoptosis-associated genes in urine sediments of bladder cancer patients.
Clin Cancer Res 10: 7457-65 (2005)
PM ID: 15569975
359: Mayer JA, Chuong CM, Widelitz RB
Rooster feathering, androgenic alopecia, and hormone-dependent tumor growth: what is in common?
Differentiation 72: 474-88 (2005)
PM ID: 15617560
360: Chodankar R, Kwang S, Sangiorgi F, Hong H, Yen HY, Deng C, Pike MC, Shuler CF, Maxson R, Dubeau L
Cell-nonautonomous induction of ovarian and uterine serous cystadenomas in mice lacking a functional Brca1 in ovarian granulosa cells.
Curr Biol 15: 561-5 (2005)
PM ID: 15797026
361: Law MJ, Chambers EJ, Katsamba PS, Haworth IS, Laird-Offringa IA
Kinetic analysis of the role of the tyrosine 13, phenylalanine 56 and glutamine 54 network in the U1A/U1 hairpin II interaction.
Nucleic Acids Res 33: 2917-28 (2005)
PM ID: 15914668 PMC1140079
362: Xu X, Bringas P, Soriano P, Chai Y
PDGFR-alpha signaling is critical for tooth cusp and palate morphogenesis.
Dev Dyn 232: 75-84 (2005)
PM ID: 15543606
363: Kim J, Jia L, Stallcup MR, Coetzee GA
The role of protein kinase A pathway and cAMP responsive element-binding protein in androgen receptor-mediated transcription at the prostate-specific antigen locus.
J Mol Endocrinol 34: 107-18 (2005)
PM ID: 15691881
364: Li W, Dasgeb B, Phillips T, Li YT, Chen M, Garner WL, Woodley DT
Wound-healing perspectives.
Dermatol Clin 23: 181-92 (2005)
PM ID: 15837149
365: Sarter B, Long TI, Tsong WH, Koh WP, Yu MC, Laird PW
Sex differential in methylation patterns of selected genes in Singapore Chinese.
Hum Genet 117: 402-3 (2005)
PM ID: 15928902
366: Kim JY, Beart RW, Shibata D
Stability of colon stem cell methylation after neo-adjuvant therapy in a patient with attenuated familial adenomatous polyposis.
BMC Gastroenterol 5: 19 (2005)
PM ID: 15941485 PMC1164411
367: Kim JY, Siegmund KD, Tavaré S, Shibata D
Age-related human small intestine methylation: evidence for stem cell niches.
BMC Med 3: 10 (2005)
PM ID: 15975143 PMC1168897
368: Xu J, Dimitrov L, Chang BL, Adams TS, Turner AR, Meyers DA, Eeles RA, Easton DF, Foulkes WD, Simard J, Giles GG, Hopper JL, Mahle L, Moller P, Bishop T, Evans C, Edwards SM, Meitz J, Bullock S, Hope Q, Hsieh CL, Halpern J, Balise RN, Oakley-Girvan I, Whittemore AS, Ewing CM, Gielzak M, Isaacs SD, Walsh PC, Wiley KE, Isaacs WB, Thibodeau SN, McDonnell SK, Cunningham JM, Zarfas KE, Hebbring S, Schaid DJ, Friedrichsen DM, Deutsch K, Kolb S, Badzioch M, Jarvik GP, Janer M, Hood L, Ostrander EA, Stanford JL, Lange EM, Beebe-Dimmer JL, Mohai CE, Cooney KA, Ikonen T, Baffoe-Bonnie A, Fredriksson H, Matikainen MP, Tammela TLj, Bailey-Wilson J, Schleutker J, Maier C, Herkommer K, Hoegel JJ, Vogel W, Paiss T, Wiklund F, Emanuelsson M, Stenman E, Jonsson BA, Gronberg H, Camp NJ, Farnham J, Cannon-Albright LA, Seminara D, ACTANE Consortium
A combined genomewide linkage scan of 1,233 families for prostate cancer-susceptibility genes conducted by the international consortium for prostate cancer genetics.
Am J Hum Genet 77: 219-29 (2005)
PM ID: 15988677 PMC1224525
369: Kabbarah O, Sotelo AK, Mallon MA, Winkeler EL, Fan MY, Pfeifer JD, Shibata D, Gutmann DH, Goodfellow PJ
Diethylstilbestrol effects and lymphomagenesis in Mlh1-deficient mice.
Int J Cancer 115: 666-9 (2005)
PM ID: 15700306
370: Stern MC, Siegmund KD, Corral R, Haile RW
XRCC1 and XRCC3 polymorphisms and their role as effect modifiers of unsaturated fatty acids and antioxidant intake on colorectal adenomas risk.
Cancer Epidemiol Biomarkers Prev 14: 609-15 (2005)
PM ID: 15767338
371: Laird PW
Cancer epigenetics.
Hum Mol Genet 14 Spec No 1: R65-76 (2005)
PM ID: 15809275
372: Baumeister P, Luo S, Skarnes WC, Sui G, Seto E, Shi Y, Lee AS
Endoplasmic reticulum stress induction of the Grp78/BiP promoter: activating mechanisms mediated by YY1 and its interactive chromatin modifiers.
Mol Cell Biol 25: 4529-40 (2005)
PM ID: 15899857 PMC1140640
373: Lee SY, Bao J, Zhou G, Shapiro J, Xu J, Shi RZ, Lu X, Clark T, Johnson DL, Kim YC, Wing C, Tseng CC, Sun M, Lin WC, Wang JG, Yang HT, Wang JG, Du W, Wu CI, Zhang XK, Wang SM
Detecting novel low-abundant transcripts in Drosophila.
RNA 11: 939-46 (2005)
PM ID: 15923377 PMC1370778
374: Lee AS
The ER chaperone and signaling regulator GRP78/BiP as a monitor of endoplasmic reticulum stress.
Methods 35: 373-81 (2005)
PM ID: 15804610
375: Shen HC, Buchanan G, Butler LM, Prescott J, Henderson M, Tilley WD, Coetzee GA
GRIP1 mediates the interaction between the amino- and carboxyl-termini of the androgen receptor.
Biol Chem 386: 69-74 (2005)
PM ID: 15843149
376: Tefft D, De Langhe SP, Del Moral PM, Sala FG, Shi W, Bellusci S, Warburton D
A novel function for the protein tyrosine phosphatase Shp2 during lung branching morphogenesis.
Dev Biol 282: 422-31 (2005)
PM ID: 15950607
377: Teyssier C, Ma H, Emter R, Kralli A, Stallcup MR
Activation of nuclear receptor coactivator PGC-1alpha by arginine methylation.
Genes Dev 19: 1466-73 (2005)
PM ID: 15964996 PMC1151663 NIHMS4950
378: Stojadinovic O, Brem H, Vouthounis C, Lee B, Fallon J, Stallcup MR, Merchant A, Galiano RD, Tomic-Canic M
Molecular pathogenesis of chronic wounds: the role of beta-catenin and c-myc in the inhibition of epithelialization and wound healing.
Am J Pathol 167: 59-69 (2005)
PM ID: 15972952 PMC1603435
379: Mulholland DJ, Dedhar S, Coetzee GA, Nelson CC
Interaction of nuclear receptors with the Wnt/beta-catenin/Tcf signaling axis: Wnt you like to know?
Endocr Rev 26: 898-915 (2005)
PM ID: 16126938
380: Liu WS, Selever J, Murali D, Sun X, Brugger SM, Ma L, Schwartz RJ, Maxson R, Furuta Y, Martin JF
Threshold-specific requirements for Bmp4 in mandibular development.
Dev Biol 283: 282-93 (2005)
PM ID: 15936012
381: Chen YH, Kim JH, Stallcup MR
GAC63, a GRIP1-dependent nuclear receptor coactivator.
Mol Cell Biol 25: 5965-72 (2005)
PM ID: 15988012 PMC1168828
382: Dong D, Ko B, Baumeister P, Swenson SD, Costa FK, Markland FS, Stiles C, Patterson JB, Bates SE, Lee AS
Vascular targeting and antiangiogenesis agents induce drug resistance effector GRP78 within the tumor microenvironment.
Cancer Res 65: 5785-91 (2005)
PM ID: 15994954
383: Widelitz RB
Wnt signaling through canonical and non-canonical pathways: recent progress.
Growth Factors 23: 111-6 (2005)
PM ID: 16019432
384: Raghavan SC, Hsieh CL, Lieber MR
Both V(D)J coding ends but neither signal end can recombine at the bcl-2 major breakpoint region, and the rejoining is ligase IV dependent.
Mol Cell Biol 25: 6475-84 (2005)
PM ID: 16024785 PMC1190333
385: Zhang C, Comai L, Johnson DL
PTEN represses RNA Polymerase I transcription by disrupting the SL1 complex.
Mol Cell Biol 25: 6899-911 (2005)
PM ID: 16055704 PMC1190253
386: Grewal SI, Rice JC
Regulation of heterochromatin by histone methylation and small RNAs.
Curr Opin Cell Biol 16: 230-8 (2005)
PM ID: 15145346
387: Chen ZX, Mann JR, Hsieh CL, Riggs AD, Chédin F
Physical and functional interactions between the human DNMT3L protein and members of the de novo methyltransferase family.
J Cell Biochem 95: 902-17 (2005)
PM ID: 15861382
388: Maxson R
Adaptation: a developmental biologist in the Antarctic.
Genesis 42: 117-23 (2005)
PM ID: 15986441
389: Jones PA
Overview of cancer epigenetics.
Semin Hematol 42: S3-8 (2005)
PM ID: 16015502
390: Calabrese P, Mecklin JP, Järvinen HJ, Aaltonen LA, Tavaré S, Shibata D
Numbers of mutations to different types of colorectal cancer.
BMC Cancer 5: 126 (2005)
PM ID: 16202134 PMC1266026
391: Ishii M, Han J, Yen HY, Sucov HM, Chai Y, Maxson RE
Combined deficiencies of Msx1 and Msx2 cause impaired patterning and survival of the cranial neural crest.
Development 132: 4937-50 (2005)
PM ID: 16221730
392: Friedrich MG, Chandrasoma S, Siegmund KD, Weisenberger DJ, Cheng JC, Toma MI, Huland H, Jones PA, Liang G
Prognostic relevance of methylation markers in patients with non-muscle invasive bladder carcinoma.
Eur J Cancer 41: 2769-78 (2005)
PM ID: 16242928
393: Shen HC, Coetzee GA
The androgen receptor: unlocking the secrets of its unique transactivation domain.
Vitam Horm 71: 301-19 (2005)
PM ID: 16112272
394: Jia L, Coetzee GA
Androgen receptor-dependent PSA expression in androgen-independent prostate cancer cells does not involve androgen receptor occupancy of the PSA locus.
Cancer Res 65: 8003-8 (2005)
PM ID: 16140973
395: Warburton D, Shi W
Lo, and the niche is knit: lysyl oxidase activity and maintenance of lung, aorta, and skin integrity.
Am J Pathol 167: 921-2 (2005)
PM ID: 16192627 PMC1603670
396: Geyer JR, Sposto R, Jennings M, Boyett JM, Axtell RA, Breiger D, Broxson E, Donahue BR, Finlay JL, Goldwein JW, Heier LA, Johnson DL, Mazewski C, Miller DC, Packer R, Puccetti D, Radcliffe J, Tao ML, Shiminski-Maher T, Children's Cancer Group
Multiagent chemotherapy and deferred radiotherapy in infants with malignant brain tumors: a report from the Children's Cancer Group.
J Clin Oncol 23: 7621-31 (2005)
PM ID: 16234523
397: Fatemi M, Pao MM, Jeong S, Gal-Yam EN, Egger G, Weisenberger DJ, Jones PA
Footprinting of mammalian promoters: use of a CpG DNA methyltransferase revealing nucleosome positions at a single molecule level.
Nucleic Acids Res 33: e176 (2005)
PM ID: 16314307 PMC1292996
398: Kim JY, Tavaré S, Shibata D
Counting human somatic cell replications: methylation mirrors endometrial stem cell divisions.
Proc Natl Acad Sci U S A 102: 17739-44 (2005)
PM ID: 16314580 PMC1308885
399: Woodson K, Weisenberger DJ, Campan M, Laird PW, Tangrea J, Johnson LL, Schatzkin A, Lanza E
Gene-specific methylation and subsequent risk of colorectal adenomas among participants of the polyp prevention trial.
Cancer Epidemiol Biomarkers Prev 14: 1219-23 (2005)
PM ID: 15894675
400: Koochekpour S, Zhuang YJ, Beroukhim R, Hsieh CL, Hofer MD, Zhau HE, Hiraiwa M, Pattan DY, Ware JL, Luftig RB, Sandhoff K, Sawyers CL, Pienta KJ, Rubin MA, Vessella RL, Sellers WR, Sartor O
Amplification and overexpression of prosaposin in prostate cancer.
Genes Chromosomes Cancer 44: 351-64 (2005)
PM ID: 16080200
401: Plikus MV, Zeichner-David M, Mayer JA, Reyna J, Bringas P, Thewissen JG, Snead ML, Chai Y, Chuong CM
Morphoregulation of teeth: modulating the number, size, shape and differentiation by tuning Bmp activity.
Evol Dev 7: 440-57 (2005)
PM ID: 16174037
402: Marquez VE, Barchi JJ, Kelley JA, Rao KV, Agbaria R, Ben-Kasus T, Cheng JC, Yoo CB, Jones PA
Zebularine: a unique molecule for an epigenetically based strategy in cancer chemotherapy. The magic of its chemistry and biology.
Nucleosides Nucleotides Nucleic Acids 24: 305-18 (2005)
PM ID: 16247946
403: Teyssier C, Ou CY, Khetchoumian K, Losson R, Stallcup MR
Transcriptional intermediary factor 1alpha mediates physical interaction and functional synergy between the coactivator-associated arginine methyltransferase 1 and glucocorticoid receptor-interacting protein 1 nuclear receptor coactivators.
Mol Endocrinol 20: 1276-86 (2005)
PM ID: 16322096 PMC1626528 NIHMS13208
404: Weisenberger DJ, Campan M, Long TI, Kim MH, Woods C, Fiala E, Ehrlich M, Laird PW
Analysis of repetitive element DNA methylation by MethyLight.
Nucleic Acids Res 33: 6823-36 (2005)
PM ID: 16326863 PMC1301596
405: Choudhary B, Ito Y, Makita T, Sasaki T, Chai Y, Sucov HM
Cardiovascular malformations with normal smooth muscle differentiation in neural crest-specific type II TGFbeta receptor (Tgfbr2) mutant mice.
Dev Biol 289: 420-9 (2005)
PM ID: 16332365
406: Yang CK, Kim JH, Li HY, Stallcup MR
Differential use of functional domains by coiled-coil coactivator in its synergistic coactivator function with beta-catenin or GRIP1.
J Biol Chem 281: 3389-97 (2005)
PM ID: 16344550 PMC1626527 NIHMS13197
407: Del Moral PM, Sala FG, Tefft D, Shi W, Keshet E, Bellusci S, Warburton D
VEGF-A signaling through Flk-1 is a critical facilitator of early embryonic lung epithelial to endothelial crosstalk and branching morphogenesis.
Dev Biol 290: 177-88 (2005)
PM ID: 16375885
408: Millstein J, Siegmund KD, Conti DV, Gauderman WJ
Testing association and linkage using affected-sib-parent study designs.
Genet Epidemiol 29: 225-33 (2006)
PM ID: 16121357
409: Chuang JC, Yoo CB, Kwan JM, Li TW, Liang G, Yang AS, Jones PA
Comparison of biological effects of non-nucleoside DNA methylation inhibitors versus 5-aza-2'-deoxycytidine.
Mol Cancer Ther 4: 1515-20 (2006)
PM ID: 16227400
410: Yue Z, Jiang TX, Widelitz RB, Chuong CM
Mapping stem cell activities in the feather follicle.
Nature 438: 1026-9 (2006)
PM ID: 16355227
411: Li JZ, Lee B, Lee AS
Endoplasmic reticulum stress-induced apoptosis: multiple pathways and activation of p53-up-regulated modulator of apoptosis (PUMA) and NOXA by p53.
J Biol Chem 281: 7260-70 (2006)
PM ID: 16407291
412: Law MJ, Linde ME, Chambers EJ, Oubridge C, Katsamba PS, Nilsson L, Haworth IS, Laird-Offringa IA
The role of positively charged amino acids and electrostatic interactions in the complex of U1A protein and U1 hairpin II RNA.
Nucleic Acids Res 34: 275-85 (2006)
PM ID: 16407334 PMC1326249
413: Ogino S, Cantor M, Kawasaki T, Brahmandam M, Kirkner GJ, Weisenberger DJ, Campan M, Laird PW, Loda M, Fuchs CS
CpG island methylator phenotype (CIMP) of colorectal cancer is best characterised by quantitative DNA methylation analysis and prospective cohort studies.
Gut 55: 1000-6 (2006)
PM ID: 16407376 PMC1856352
414: Yue Z, Jiang TX, Widelitz RB, Chuong CM
Wnt3a gradient converts radial to bilateral feather symmetry via topological arrangement of epithelia.
Proc Natl Acad Sci U S A 103: 951-5 (2006)
PM ID: 16418297 PMC1347975
415: Goll MG, Kirpekar F, Maggert KA, Yoder JA, Hsieh CL, Zhang XK, Golic KG, Jacobsen SE, Bestor TH
Methylation of tRNAAsp by the DNA methyltransferase homolog Dnmt2.
Science 311: 395-8 (2006)
PM ID: 16424344
416: Kim JH, Lee MH, Kim BJ, Kim JH, Han SJ, Kim HY, Stallcup MR
Role of aspartate 351 in transactivation and active conformation of estrogen receptor alpha.
J Mol Endocrinol 35: 449-64 (2006)
PM ID: 16326832
417: Prescott J, Coetzee GA
Molecular chaperones throughout the life cycle of the androgen receptor.
Cancer Lett 231: 12-9 (2006)
PM ID: 16356826
418: Fiegl H, Millinger S, Goebel G, Müller-Holzner E, Marth C, Laird PW, Widschwendter M
Breast cancer DNA methylation profiles in cancer cells and tumor stroma: association with HER-2/neu status in primary breast cancer.
Cancer Res 66: 29-33 (2006)
PM ID: 16397211
419: Milan J, Charalambous C, Elhag R, Chen TC, Li W, Guan S, Hofman FM, Zidovetzki R
Multiple signaling pathways are involved in endothelin-1-induced brain endothelial cell migration.
Am J Physiol Cell Physiol 291: C155-64 (2006)
PM ID: 16452160
420: Mao C, Tai WC, Bai Y, Poizat C, Lee AS
In vivo regulation of Grp78/BiP transcription in the embryonic heart: role of the endoplasmic reticulum stress response element and GATA-4.
J Biol Chem 281: 8877-87 (2006)
PM ID: 16452489
421: Lee DY, Northrop JP, Kuo MH, Stallcup MR
Histone H3 lysine 9 methyltransferase G9a is a transcriptional coactivator for nuclear receptors.
J Biol Chem 281: 8476-85 (2006)
PM ID: 16461774 PMC1770944 NIHMS13212
422: Del Moral PM, De Langhe SP, Sala FG, Veltmaat JM, Tefft D, Wang KS, Warburton D, Bellusci S
Differential role of FGF9 on epithelium and mesenchyme in mouse embryonic lung.
Dev Biol 293: 77-89 (2006)
PM ID: 16494859
423: Katsamba PS, Navratilova I, Calderon-Cacia M, Fan LL, Thornton K, Zhu M, Bos TV, Forte C, Friend D, Laird-Offringa IA, Tavares G, Whatley J, Shi E, Widom A, Lindquist KC, Klakamp S, Drake A, Bohmann D, Roell M, Rose L, Dorocke J, Roth B, Luginbühl B, Myszka DG
Kinetic analysis of a high-affinity antibody/antigen interaction performed by multiple Biacore users.
Anal Biochem 352: 208-21 (2006)
PM ID: 16564019
424: Sasaki T, Ito Y, Bringas P, Chou S, Urata MM, Slavkin HC, Chai Y
TGFbeta-mediated FGF signaling is crucial for regulating cranial neural crest cell proliferation during frontal bone development.
Development 133: 371-81 (2006)
PM ID: 16368934
425: Yoo CB, Jones PA
Epigenetic therapy of cancer: past, present and future.
Nat Rev Drug Discov 5: 37-50 (2006)
PM ID: 16485345
426: Chen YH, Beischlag TV, Kim JH, Perdew GH, Stallcup MR
Role of GAC63 in transcriptional activation mediated by the aryl hydrocarbon receptor.
J Biol Chem 281: 12242-7 (2006)
PM ID: 16513642 PMC1770942 NIHMS13199
427: Sims JK, Houston SI, Magazinnik T, Rice JC
A trans-tail histone code defined by monomethylated H4 Lys-20 and H3 Lys-9 demarcates distinct regions of silent chromatin.
J Biol Chem 281: 12760-6 (2006)
PM ID: 16517599
428: Merrill AE, Bochukova EG, Brugger SM, Ishii M, Pilz DT, Wall SA, Lyons KM, Wilkie AO, Maxson RE
Cell mixing at a neural crest-mesoderm boundary and deficient ephrin-Eph signaling in the pathogenesis of craniosynostosis.
Hum Mol Genet 15: 1319-28 (2006)
PM ID: 16540516
429: Huang FT, Yu KJ, Hsieh CL, Lieber MR
Downstream boundary of chromosomal R-loops at murine switch regions: implications for the mechanism of class switch recombination.
Proc Natl Acad Sci U S A 103: 5030-5 (2006)
PM ID: 16547142 PMC1458789
430: Bandyopadhyay B, Fan J, Guan S, Li YT, Chen M, Woodley DT, Li W
A "traffic control" role for TGFbeta3: orchestrating dermal and epidermal cell motility during wound healing.
J Cell Biol 172: 1093-105 (2006)
PM ID: 16549496 PMC2063766
431: Luo Y, Knuckley B, Lee YH, Stallcup MR, Thompson PR
A fluoroacetamidine-based inactivator of protein arginine deiminase 4: design, synthesis, and in vitro and in vivo evaluation.
J Am Chem Soc 128: 1092-3 (2006)
PM ID: 16433522 PMC1850713 NIHMS13234
432: Wolff EM, Liang G, Jones PA
Mechanisms of Disease: genetic and epigenetic alterations that drive bladder cancer.
Nat Clin Pract Urol 2: 502-10 (2006)
PM ID: 16474624
433: Li JZ, Lee AS
Stress induction of GRP78/BiP and its role in cancer.
Curr Mol Med 6: 45-54 (2006)
PM ID: 16472112
434: Li YT, Fan J, Chen M, Li W, Woodley DT
Transforming growth factor-alpha: a major human serum factor that promotes human keratinocyte migration.
J Invest Dermatol 126: 2096-105 (2006)
PM ID: 16691197
435: Kim JH, Yang CK, Stallcup MR
Downstream signaling mechanism of the C-terminal activation domain of transcriptional coactivator CoCoA.
Nucleic Acids Res 34: 2736-50 (2006)
PM ID: 16717280 PMC1464418
436: Higashimoto T, Panopoulos A, Hsieh CL, Zandi E
TNFalpha induces chromosomal abnormalities independent of ROS through IKK, JNK, p38 and caspase pathways.
Cytokine 34: 39-50 (2006)
PM ID: 16723255
437: Law MJ, Rice AJ, Lin PC, Laird-Offringa IA
The role of RNA structure in the interaction of U1A protein with U1 hairpin II RNA.
RNA 12: 1168-78 (2006)
PM ID: 16738410 PMC1484440
438: Xu X, Han J, Ito Y, Bringas P, Urata MM, Chai Y
Cell autonomous requirement for Tgfbr2 in the disappearance of medial edge epithelium during palatal fusion.
Dev Biol 297: 238-48 (2006)
PM ID: 16780827
439: Dudas M, Kim J, Li WY, Nagy A, Larsson J, Karlsson S, Chai Y, Kaartinen V
Epithelial and ectomesenchymal role of the type I TGF-beta receptor ALK5 during facial morphogenesis and palatal fusion.
Dev Biol 296: 298-314 (2006)
PM ID: 16806156 PMC1557652 NIHMS11652
440: Takai N, Kawamata N, Walsh CS, Gery S, Desmond JC, Whittaker S, Said JW, Popoviciu LM, Jones PA, Miyakawa I, Koeffler HP
Discovery of epigenetically masked tumor suppressor genes in endometrial cancer.
Mol Cancer Res 3: 261-9 (2006)
PM ID: 15886297
441: Marquez VE, Kelley JA, Agbaria R, Ben-Kasus T, Cheng JC, Yoo CB, Jones PA
Zebularine: a unique molecule for an epigenetically based strategy in cancer chemotherapy.
Ann N Y Acad Sci 1058: 246-54 (2006)
PM ID: 16394141
442: Fujii Y, Khoshnoodi J, Takenaka H, Hosoyamada M, Nakajo A, Bessho F, Kudo A, Takahashi S, Arimura Y, Yamada A, Nagasawa T, Ruotsalainen V, Tryggvason K, Lee AS, Yan K
The effect of dexamethasone on defective nephrin transport caused by ER stress: a potential mechanism for the therapeutic action of glucocorticoids in the acquired glomerular diseases.
Kidney Int 69: 1350-9 (2006)
PM ID: 16531978
443: Ehrlich M, Woods CB, Yu MC, Dubeau L, Yang F, Campan M, Weisenberger DJ, Long TI, Youn B, Fiala ES, Laird PW
Quantitative analysis of associations between DNA hypermethylation, hypomethylation, and DNMT RNA levels in ovarian tumors.
Oncogene 25: 2636-45 (2006)
PM ID: 16532039 PMC1449872 NIHMS6123
444: van Rietschoten JG, Verzijlbergen KF, Gringhuis SI, van der Pouw Kraan TC, Bayley JP, Wierenga EA, Jones PA, Kooter JM, Verweij CL
Differentially methylated alleles in a distinct region of the human interleukin-1alpha promoter are associated with allele-specific expression of IL-1alpha in CD4+ T cells.
Blood 108: 2143-9 (2006)
PM ID: 16788102 PMC1895553
445: Weisenberger DJ, Siegmund KD, Campan M, Young JP, Long TI, Faasse MA, Kang GH, Widschwendter M, Weener D, Buchanan D, Koh H, Simms L, Barker MA, Leggett BA, Levine J, Kim MH, French AJ, Thibodeau SN, Jass J, Haile R, Laird PW
CpG island methylator phenotype underlies sporadic microsatellite instability and is tightly associated with BRAF mutation in colorectal cancer.
Nat Genet 38: 787-93 (2006)
PM ID: 16804544
446: Siegmund KD, Levine AJ, Chang JL, Laird PW
Modeling exposures for DNA methylation profiles.
Cancer Epidemiol Biomarkers Prev 15: 567-72 (2006)
PM ID: 16537717
447: Fan J, Guan S, Cheng CF, Cho M, Fields JW, Chen M, Denning MF, Woodley DT, Li W
PKCdelta clustering at the leading edge and mediating growth factor-enhanced, but not ecm-initiated, dermal fibroblast migration.
J Invest Dermatol 126: 1233-43 (2006)
PM ID: 16543902
448: Fu Y, Lee AS
Glucose regulated proteins in cancer progression, drug resistance and immunotherapy.
Cancer Biol Ther 5: 741-4 (2006)
PM ID: 16861902
449: Marjoram P, Chang JL, Laird PW, Siegmund KD
Cluster analysis for DNA methylation profiles having a detection threshold.
BMC Bioinformatics 7: 361 (2006)
PM ID: 16872497 PMC1555616
450: Lee AS, Hendershot LM
ER stress and cancer.
Cancer Biol Ther 5: 721-2 (2006)
PM ID: 16880733
451: De Langhe SP, Carraro G, Warburton D, Hajihosseini MK, Bellusci S
Levels of mesenchymal FGFR2 signaling modulate smooth muscle progenitor cell commitment in the lung.
Dev Biol 299: 52-62 (2006)
PM ID: 16989802
452: Ogino S, Kawasaki T, Brahmandam M, Cantor M, Kirkner GJ, Spiegelman D, Makrigiorgos GM, Weisenberger DJ, Laird PW, Loda M, Fuchs CS
Precision and performance characteristics of bisulfite conversion and real-time PCR (MethyLight) for quantitative DNA methylation analysis.
J Mol Diagn 8: 209-17 (2006)
PM ID: 16645207 PMC1867588
453: Nguyen HV, Chen JL, Zhong JF, Kim KJ, Crandall ED, Borok Z, Chen Y, Ann DK
SUMOylation attenuates sensitivity toward hypoxia- or desferroxamine-induced injury by modulating adaptive responses in salivary epithelial cells.
Am J Pathol 168: 1452-63 (2006)
PM ID: 16651613 PMC1606580
454: Pitkänen-Arsiola T, Tillman JE, Gu G, Yuan JM, Roberts RL, Wantroba M, Coetzee GA, Cookson MS, Kasper S
Androgen and anti-androgen treatment modulates androgen receptor activity and DJ-1 stability.
Prostate 66: 1177-93 (2006)
PM ID: 16652386
455: Saito Y, Liang G, Egger G, Friedman JM, Chuang JC, Coetzee GA, Jones PA
Specific activation of microRNA-127 with downregulation of the proto-oncogene BCL6 by chromatin-modifying drugs in human cancer cells.
Cancer Cell 9: 435-43 (2006)
PM ID: 16766263
456: Raghavan SC, Tsai AG, Hsieh CL, Lieber MR
Analysis of non-B DNA structure at chromosomal sites in the mammalian genome.
Methods Enzymol 409: 301-16 (2006)
PM ID: 16793408
457: Yang CK, Kim JH, Stallcup MR
Role of the N-terminal activation domain of the coiled-coil coactivator in mediating transcriptional activation by beta-catenin.
Mol Endocrinol 20: 3251-62 (2006)
PM ID: 16931570 PMC1770943 NIHMS13202
458: Luo S, Mao C, Lee B, Lee AS
GRP78/BiP is required for cell proliferation and protecting the inner cell mass from apoptosis during early mouse embryonic development.
Mol Cell Biol 26: 5688-97 (2006)
PM ID: 16847323 PMC1592753
459: Egger G, Jeong S, Escobar SG, Cortez CC, Li TW, Saito Y, Yoo CB, Jones PA, Liang G
Identification of DNMT1 (DNA methyltransferase 1) hypomorphs in somatic knockouts suggests an essential role for DNMT1 in cell survival.
Proc Natl Acad Sci U S A 103: 14080-5 (2006)
PM ID: 16963560 PMC1599915
460: Lee YH, Stallcup MR
Interplay of Fli-I and FLAP1 for regulation of beta-catenin dependent transcription.
Nucleic Acids Res 34: 5052-9 (2006)
PM ID: 16990252 PMC1636430
461: Ogino S, Odze RD, Kawasaki T, Brahmandam M, Kirkner GJ, Laird PW, Loda M, Fuchs CS
Correlation of pathologic features with CpG island methylator phenotype (CIMP) by quantitative DNA methylation analysis in colorectal carcinoma.
Am J Surg Pathol 30: 1175-83 (2006)
PM ID: 16931963
462: Jia L, Shen HC, Wantroba M, Khalid O, Liang G, Wang QS, Gentzschein E, Pinski JK, Stanczyk FZ, Jones PA, Coetzee GA
Locus-wide chromatin remodeling and enhanced androgen receptor-mediated transcription in recurrent prostate tumor cells.
Mol Cell Biol 26: 7331-41 (2006)
PM ID: 16980632 PMC1592894
463: Saito Y, Jones PA
Epigenetic activation of tumor suppressor microRNAs in human cancer cells.
Cell Cycle 5: 2220-2 (2006)
PM ID: 17012846
464: Lin CM, Jiang TX, Widelitz RB, Chuong CM
Molecular signaling in feather morphogenesis.
Curr Opin Cell Biol 18: 730-41 (2006)
PM ID: 17049829
465: Zhong S, Fromm J, Johnson DL
TBP is differentially regulated by c-Jun N-terminal kinase 1 (JNK1) and JNK2 through Elk-1, controlling c-Jun expression and cell proliferation.
Mol Cell Biol 27: 54-64 (2006)
PM ID: 17074809 PMC1800663
466: Chai Y, Maxson RE
Recent advances in craniofacial morphogenesis.
Dev Dyn 235: 2353-75 (2006)
PM ID: 16680722
467: Luo Y, Arita K, Bhatia M, Knuckley B, Lee YH, Stallcup MR, Sato M, Thompson PR
Inhibitors and inactivators of protein arginine deiminase 4: functional and structural characterization.
Biochemistry 45: 11727-36 (2006)
PM ID: 17002273 PMC1808342 NIHMS13213
468: Pootrakul L, Datar RH, Shi SR, Cai J, Hawes D, Groshen SG, Lee AS, Cote RJ
Expression of stress response protein Grp78 is associated with the development of castration-resistant prostate cancer.
Clin Cancer Res 12: 5987-93 (2006)
PM ID: 17062670
469: Zhou B, Ann DK, Li X, Kim KJ, Lin HH, Minoo P, Crandall ED, Borok Z
Hypertonic induction of aquaporin-5: novel role of hypoxia-inducible factor-1alpha.
Am J Physiol Cell Physiol 292: C1280-90 (2006)
PM ID: 17108010
470: Oka K, Oka S, Sasaki T, Ito Y, Bringas P, Nonaka K, Chai Y
The role of TGF-beta signaling in regulating chondrogenesis and osteogenesis during mandibular development.
Dev Biol 303: 391-404 (2006)
PM ID: 17204263 PMC2074881 NIHMS19038
471: Wu PE, Jiang TX, Shen JY, Widelitz RB, Chuong CM
Morphoregulation of avian beaks: comparative mapping of growth zone activities and morphological evolution.
Dev Dyn 235: 1400-12 (2006)
PM ID: 16586442
472: Gal-Yam EN, Jeong S, Tanay A, Egger G, Lee AS, Jones PA
Constitutive nucleosome depletion and ordered factor assembly at the GRP78 promoter revealed by single molecule footprinting.
PLoS Genet 2: e160 (2006)
PM ID: 17002502 PMC1574359
473: Widelitz RB, Baker RE, Plikus MV, Lin CM, Maini PK, Paus R, Chuong CM
Distinct mechanisms underlie pattern formation in the skin and skin appendages.
Birth Defects Res C Embryo Today 78: 280-91 (2006)
PM ID: 17061271
474: Widschwendter M, Fiegl H, Egle D, Mueller-Holzner E, Spizzo G, Marth C, Weisenberger DJ, Campan M, Young JP, Jacobs I, Laird PW
Epigenetic stem cell signature in cancer.
Nat Genet 39: 157-8 (2006)
PM ID: 17200673
475: Warburton D, Gauldie J, Bellusci S, Shi W
Lung development and susceptibility to chronic obstructive pulmonary disease.
Proc Am Thorac Soc 3: 668-72 (2007)
PM ID: 17065371
476: Gauldie J, Kolb M, Ask K, Martin GP, Bonniaud P, Warburton D
Smad3 signaling involved in pulmonary fibrosis and emphysema.
Proc Am Thorac Soc 3: 696-702 (2007)
PM ID: 17065376 PMC2647655
477: Wong HL, Byun HM, Kwan JM, Campan M, Ingles SA, Laird PW, Yang AS
Rapid and quantitative method of allele-specific DNA methylation analysis.
Biotechniques 41: 734-9 (2007)
PM ID: 17191619
478: Egger G, Aparicio AM, Escobar SG, Jones PA
Inhibition of histone deacetylation does not block resilencing of p16 after 5-aza-2'-deoxycytidine treatment.
Cancer Res 67: 346-53 (2007)
PM ID: 17210717
479: Woodley DT, Remington J, Huang Y, Hou Y, Li W, Keene DR, Chen M
Intravenously injected human fibroblasts home to skin wounds, deliver type VII collagen, and promote wound healing.
Mol Ther 15: 628-35 (2007)
PM ID: 17245357
480: Kohonen-Corish MR, Sigglekow ND, Susanto J, Chapuis PH, Bokey EL, Dent OF, Chan CK, Lin BP, Seng TJ, Laird PW, Young JP, Leggett BA, Jass JR, Sutherland RL
Promoter methylation of the mutated in colorectal cancer gene is a frequent early event in colorectal cancer.
Oncogene 26: 4435-41 (2007)
PM ID: 17260021
481: Li W, Li YT, Guan S, Fan J, Cheng CF, Bright AM, Chinn C, Chen M, Woodley DT
Extracellular heat shock protein-90alpha: linking hypoxia to skin cell motility and wound healing.
EMBO J 26: 1221-33 (2007)
PM ID: 17304217 PMC1817627
482: Driskell RR, Goodheart M, Neff T, Liu XS, Luo MP, Moothart C, Sigmund CD, Hosokawa R, Chai Y, Engelhardt JF
Wnt3a regulates Lef-1 expression during airway submucosal gland morphogenesis.
Dev Biol 305: 90-102 (2007)
PM ID: 17335794 PMC1892170 NIHMS17863
483: Flodby P, Zhou B, Ann DK, Kim KJ, Minoo P, Crandall ED, Borok Z
Conserved elements within first intron of aquaporin-5 (Aqp5) function as transcriptional enhancers.
Biochem Biophys Res Commun 356: 26-31 (2007)
PM ID: 17339032 PMC2366028 NIHMS20872
484: Zhu NL, Li C, Huang HH, Sebald M, Londhe VA, Heisterkamp N, Warburton D, Bellusci S, Minoo P
TNF-alpha represses transcription of human Bone Morphogenetic Protein-4 in lung epithelial cells.
Gene 393: 70-80 (2007)
PM ID: 17350185 PMC1945170 NIHMS22407
485: Jones PA, Baylin SB
The epigenomics of cancer.
Cell 128: 683-92 (2007)
PM ID: 17320506
486: Chen YH, Yang CK, Xia M, Ou CY, Stallcup MR
Role of GAC63 in transcriptional activation mediated by beta-catenin.
Nucleic Acids Res 35: 2084-92 (2007)
PM ID: 17344318 PMC1874623
487: Oka S, Oka K, Xu X, Sasaki T, Bringas P, Chai Y
Cell autonomous requirement for TGF-beta signaling during odontoblast differentiation and dentin matrix formation.
Mech Dev 124: 409-15 (2007)
PM ID: 17449229 PMC2704601 NIHMS25567
488: Stern MC, Siegmund KD, Conti DV, Corral R, Haile RW
XRCC1, XRCC3, and XPD polymorphisms as modifiers of the effect of smoking and alcohol on colorectal adenoma risk.
Cancer Epidemiol Biomarkers Prev 15: 2384-90 (2007)
PM ID: 17164360
489: Heo K, Kim BH, Kim KJ, Choi J, Kim HJ, Zhan Y, Ranish JA, An W
Isolation and characterization of proteins associated with histone H3 tails in vivo.
J Biol Chem 282: 15476-83 (2007)
PM ID: 17403666
490: Ni M, Lee AS
ER chaperones in mammalian development and human diseases.
FEBS Lett 581: 3641-51 (2007)
PM ID: 17481612 PMC2040386 NIHMS28130
491: Chen HM, Xia M, Lin MW, Yang HT, Kuhlenkamp JF, Li T, Sodir NM, Chen YH, Josef-Lenz H, Laird PW, Clarke S, Mato JM, Lu SC
Role of methionine adenosyltransferase 2A and S-adenosylmethionine in mitogen-induced growth of human colon cancer cells.
Gastroenterology 133: 207-18 (2007)
PM ID: 17631143
492: Lin HH, Xiong YP, Ho YS, Zhou B, Nguyen HV, Deng HT, Lee RH, Yen Y, Borok Z, Ann DK
Transcriptional regulation by targeted expression of architectural transcription factor high mobility group A2 in salivary glands of transgenic mice.
Eur J Oral Sci 115: 30-9 (2007)
PM ID: 17305714
493: Kerr KM, Galler JS, Hagen JA, Laird PW, Laird-Offringa IA
The role of DNA methylation in the development and progression of lung adenocarcinoma.
Dis Markers 23: 5-30 (2007)
PM ID: 17325423
494: Alonzo TA, Siegmund KD
Statistical methods for evaluating DNA methylation as a marker for early detection or prognosis.
Dis Markers 23: 113-20 (2007)
PM ID: 17325431
495: Bánhegyi G, Baumeister P, Benedetti A, Dong D, Fu Y, Lee AS, Li JZ, Mao C, Margittai E, Ni M, Paschen W, Piccirella S, Senesi S, Sitia R, Wang M, Yang W
Endoplasmic reticulum stress.
Ann N Y Acad Sci 1113: 58-71 (2007)
PM ID: 17483206
496: Ramasamy SK, Mailleux AA, Gupte VV, Mata F, Sala FG, Veltmaat JM, Del Moral PM, De Langhe S, Parsa S, Kelly LK, Kelly R, Shia W, Keshet E, Minoo P, Warburton D, Bellusci S
Fgf10 dosage is critical for the amplification of epithelial cell progenitors and for the formation of multiple mesenchymal lineages during lung development.
Dev Biol 307: 237-47 (2007)
PM ID: 17560563
497: Cozen W, Gebregziabher M, Conti DV, Van Den Berg DJ, Coetzee GA, Wang SS, Rothman N, Bernstein L, Hartge P, Morhbacher A, Coetzee SG, Salam MT, Wang W, Zadnick J, Ingles SA
Interleukin-6-related genotypes, body mass index, and risk of multiple myeloma and plasmacytoma.
Cancer Epidemiol Biomarkers Prev 15: 2285-91 (2007)
PM ID: 17119059
498: Chuang JC, Jones PA
Epigenetics and microRNAs.
Pediatr Res 61: 24R-29R (2007)
PM ID: 17413852
499: An W
Histone acetylation and methylation: combinatorial players for transcriptional regulation.
Subcell Biochem 41: 351-69 (2007)
PM ID: 17484136
500: Johnson SS, Zhang C, Fromm J, Willis IM, Johnson DL
Mammalian Maf1 is a negative regulator of transcription by all three nuclear RNA polymerases.
Mol Cell 26: 367-79 (2007)
PM ID: 17499043
501: Jariwala U, Prescott J, Jia L, Barski A, Pregizer S, Cogan JP, Arasheben A, Tilley WD, Scher HI, Gerald WL, Buchanan G, Coetzee GA, Frenkel B
Identification of novel androgen receptor target genes in prostate cancer.
Mol Cancer 6: 39 (2007)
PM ID: 17553165 PMC1904239
502: Huang FT, Yu KJ, Balter BB, Selsing E, Oruc Z, Khamlichi AA, Hsieh CL, Lieber MR
Sequence dependence of chromosomal R-loops at the immunoglobulin heavy-chain Smu class switch region.
Mol Cell Biol 27: 5921-32 (2007)
PM ID: 17562862 PMC1952116
503: Guan S, Chen M, Woodley DT, Li W
Nckbeta adapter controls neuritogenesis by maintaining the cellular paxillin level.
Mol Cell Biol 27: 6001-11 (2007)
PM ID: 17591694 PMC1952161
504: Wu SK, Trievel RC, Rice JC
Human SFMBT is a transcriptional repressor protein that selectively binds the N-terminal tail of histone H3.
FEBS Lett 581: 3289-96 (2007)
PM ID: 17599839 PMC2045647 NIHMS26798
505: Chen YH, Ishii M, Sun J, Sucov HM, Maxson RE
Msx1 and Msx2 regulate survival of secondary heart field precursors and post-migratory proliferation of cardiac neural crest in the outflow tract.
Dev Biol 308: 421-37 (2007)
PM ID: 17601530
506: Widelitz RB, Veltmaat JM, Mayer JA, Foley J, Chuong CM
Mammary glands and feathers: comparing two skin appendages which help define novel classes during vertebrate evolution.
Semin Cell Dev Biol 18: 255-66 (2007)
PM ID: 17382566
507: Zhou D, Zhong S, Ye JJ, Quach KM, Johnson DL, Chen SP
PNRC is a unique nuclear receptor coactivator that stimulates RNA polymerase III-dependent transcription.
J Mol Signal 2: 5 (2007)
PM ID: 17612402 PMC1939705
508: Yoo CB, Jeong S, Egger G, Liang G, Phiasivongsa P, Tang CK, Redkar S, Jones PA
Delivery of 5-aza-2'-deoxycytidine to cells using oligodeoxynucleotides.
Cancer Res 67: 6400-8 (2007)
PM ID: 17616700
509: Daneshmand S, Quek ML, Lin E, Lee CT, Cote RJ, Hawes D, Cai J, Groshen S, Lieskovsky G, Skinner DG, Lee AS, Pinski J
Glucose-regulated protein GRP78 is up-regulated in prostate cancer and correlates with recurrence and survival.
Hum Pathol 38: 1547-52 (2007)
PM ID: 17640713
510: Tsou JA, Galler JS, Wali A, Ye W, Siegmund KD, Groshen S, Laird PW, Turla S, Koss MN, Pass HI, Laird-Offringa IA
DNA methylation profile of 28 potential marker loci in malignant mesothelioma.
Lung Cancer 58: 220-30 (2007)
PM ID: 17659810 PMC2752414 NIHMS33001
511: Jensky NE, Sims JK, Rice JC, Dreyer HC, Schroeder ET
The influence of eccentric exercise on mRNA expression of skeletal muscle regulators.
Eur J Appl Physiol 101: 473-80 (2007)
PM ID: 17661068
512: Chu MW, Siegmund KD, Eckstam CL, Kim JY, Yang AS, Kanel GC, Tavaré S, Shibata D
Lack of increases in methylation at three CpG-rich genomic loci in non-mitotic adult tissues during aging.
BMC Med Genet 8: 50 (2007)
PM ID: 17672908 PMC1950491
513: Han J, Ishii M, Bringas P, Maas RL, Maxson RE, Chai Y
Concerted action of Msx1 and Msx2 in regulating cranial neural crest cell differentiation during frontal bone development.
Mech Dev 124: 729-45 (2007)
PM ID: 17693062 PMC2220014 NIHMS31781
514: Moeller A, Ask K, Warburton D, Gauldie J, Kolb M
The bleomycin animal model: a useful tool to investigate treatment options for idiopathic pulmonary fibrosis?
Int J Biochem Cell Biol 40: 362-82 (2007)
PM ID: 17936056 PMC2323681 NIHMS42238
515: Ding W, Shi W, Bellusci S, Groffen J, Heisterkamp N, Minoo P, Warburton D
Sprouty2 downregulation plays a pivotal role in mediating crosstalk between TGF-beta1 signaling and EGF as well as FGF receptor tyrosine kinase-ERK pathways in mesenchymal cells.
J Cell Physiol 212: 796-806 (2007)
PM ID: 17516543
516: Froese AR, Ask K, Labiris R, Farncombe T, Warburton D, Inman MD, Gauldie J, Kolb M
Three-dimensional computed tomography imaging in an animal model of emphysema.
Eur Respir J 30: 1082-9 (2007)
PM ID: 17804451
517: Qiao R, Yan W, Clavijo CA, Mehrian-Shai R, Zhong Q, Kim KJ, Ann DK, Crandall ED, Borok Z
Effects of KGF on alveolar epithelial cell transdifferentiation are mediated by JNK signaling.
Am J Respir Cell Mol Biol 38: 239-46 (2007)
PM ID: 17872496 PMC2214671
518: Siegmund KD, Connor CM, Campan M, Long TI, Weisenberger DJ, Biniszkiewicz D, Jaenisch R, Laird PW, Akbarian S
DNA methylation in the human cerebral cortex is dynamically regulated throughout the life span and involves differentiated neurons.
PLoS One 2: e895 (2007)
PM ID: 17878930 PMC1964879
519: Wasserberg N, Haney M, Petrone P, Ritter MR, Emami C, Rosca J, Siegmund KD, Kaufman HS
Morbid obesity adversely impacts pelvic floor function in females seeking attention for weight loss surgery.
Dis Colon Rectum 50: 2096-103 (2007)
PM ID: 17899277
520: Ask K, Bonniaud P, Maass K, Eickelberg O, Margetts PJ, Warburton D, Groffen J, Gauldie J, Kolb M
Progressive pulmonary fibrosis is mediated by TGF-beta isoform 1 but not TGF-beta3.
Int J Biochem Cell Biol 40: 484-95 (2007)
PM ID: 17931953 PMC2350199 NIHMS42236
521: Prescott J, Jariwala U, Jia L, Cogan JP, Barski A, Pregizer S, Shen HC, Arasheben A, Neilson JJ, Frenkel B, Coetzee GA
Androgen receptor-mediated repression of novel target genes.
Prostate 67: 1371-83 (2007)
PM ID: 17624924
522: Shi W, Bellusci S, Warburton D
Lung development and adult lung diseases.
Chest 132: 651-6 (2007)
PM ID: 17699136
523: Warburton D, Kaartinen V
When the lung is stretched, could it be thrombospondin via TGFbeta1 peptide activation?
J Physiol 584: 365 (2007)
PM ID: 17932141 PMC2277164
524: Ko SO, Chung IH, Xu X, Oka S, Zhao H, Cho ES, Deng C, Chai Y
Smad4 is required to regulate the fate of cranial neural crest cells.
Dev Biol 312: 435-47 (2007)
PM ID: 17964566 PMC2704603 NIHMS35782
525: Tsou JA, Galler JS, Siegmund KD, Laird PW, Turla S, Cozen W, Hagen JA, Koss MN, Laird-Offringa IA
Identification of a panel of sensitive and specific DNA methylation markers for lung adenocarcinoma.
Mol Cancer 6: 70 (2007)
PM ID: 17967182 PMC2206053
526: Lee EJ, Nichols PW, Spicer D, Groshen S, Yu MC, Lee AS
GRP78 as a novel predictor of responsiveness to chemotherapy in breast cancer.
Cancer Res 66: 7849-53 (2007)
PM ID: 16912156
527: Sodir NM, Chen X, Park R, Nickel AE, Conti PS, Moats RA, Bading JR, Shibata D, Laird PW
Smad3 deficiency promotes tumorigenesis in the distal colon of ApcMin/+ mice.
Cancer Res 66: 8430-8 (2007)
PM ID: 16951153
528: Chen T, Burke KA, Zhan Y, Wang XD, Shibata D, Zhao Y
IL-12 facilitates both the recovery of endogenous hematopoiesis and the engraftment of stem cells after ionizing radiation.
Exp Hematol 35: 203-13 (2007)
PM ID: 17258069
529: Pemberton TJ, Li FY, Oka S, Mendoza-Fandino GA, Hsu YH, Bringas P, Chai Y, Snead ML, Mehrian-Shai R, Patel PI
Identification of novel genes expressed during mouse tooth development by microarray gene expression analysis.
Dev Dyn 236: 2245-57 (2007)
PM ID: 17626284
530: Fu H, Ishii M, Gu Y, Maxson R
Conditional alleles of Msx1 and Msx2.
Genesis 45: 477-81 (2007)
PM ID: 17654563
531: Unbekandt M, Del Moral PM, Sala FG, Bellusci S, Warburton D, Fleury V
Tracheal occlusion increases the rate of epithelial branching of embryonic mouse lung via the FGF10-FGFR2b-Sprouty2 pathway.
Mech Dev 125: 314-24 (2007)
PM ID: 18082381 PMC2275719 NIHMS41601
532: Pyrko P, Schönthal AH, Hofman FM, Chen TC, Lee AS
The unfolded protein response regulator GRP78/BiP as a novel target for increasing chemosensitivity in malignant gliomas.
Cancer Res 67: 9809-16 (2007)
PM ID: 17942911
533: Buchanan G, Ricciardelli C, Harris JM, Prescott J, Yu ZC, Jia L, Butler LM, Marshall VR, Scher HI, Gerald WL, Coetzee GA, Tilley WD
Control of androgen receptor signaling in prostate cancer by the cochaperone small glutamine rich tetratricopeptide repeat containing protein alpha.
Cancer Res 67: 10087-96 (2007)
PM ID: 17942943
534: Lin JC, Jeong S, Liang G, Takai D, Fatemi M, Tsai YC, Egger G, Gal-Yam EN, Jones PA
Role of nucleosomal occupancy in the epigenetic silencing of the MLH1 CpG island.
Cancer Cell 12: 432-44 (2007)
PM ID: 17996647
535: George B, Datar RH, Wu L, Cai J, Patten N, Beil SJ, Groshen S, Stein JP, Skinner DG, Jones PA, Cote RJ
p53 gene and protein status: the role of p53 alterations in predicting outcome in patients with bladder cancer.
J Clin Oncol 25: 5352-8 (2007)
PM ID: 18048815
536: Houshdaran S, Cortessis VK, Siegmund KD, Yang AJ, Laird PW, Sokol RZ
Widespread epigenetic abnormalities suggest a broad DNA methylation erasure defect in abnormal human sperm.
PLoS One 2: e1289 (2007)
PM ID: 18074014 PMC2100168
537: Kang GH, Lee SY, Cho NY, Gandamihardja TA, Long TI, Weisenberger DJ, Campan M, Laird PW
DNA methylation profiles of gastric carcinoma characterized by quantitative DNA methylation analysis.
Lab Invest 88: 161-70 (2007)
PM ID: 18158559
538: Miranda TB, Jones PA
DNA methylation: the nuts and bolts of repression.
J Cell Physiol 213: 384-90 (2008)
PM ID: 17708532
539: Liu Z, Choi SW, Crott JW, Keyes MK, Jang H, Smith DE, Kim MH, Laird PW, Bronson R, Mason JB
Mild depletion of dietary folate combined with other B vitamins alters multiple components of the Wnt pathway in mouse colon.
J Nutr 137: 2701-8 (2008)
PM ID: 18029487
540: Grønbaek K, Hother C, Jones PA
Epigenetic changes in cancer.
APMIS 115: 1039-59 (2008)
PM ID: 18042143
541: Poynter JN, Figueiredo JC, Conti DV, Kennedy K, Gallinger S, Siegmund KD, Casey GR, Thibodeau SN, Jenkins MA, Hopper JL, Byrnes GB, Baron JA, Goode EL, Tiirikainen M, Lindor NM, Grove J, Newcomb P, Jass J, Young JP, Potter JD, Haile RW, Duggan DJ, Le Marchand L, Colon CFR
Variants on 9p24 and 8q24 are associated with risk of colorectal cancer: results from the Colon Cancer Family Registry.
Cancer Res 67: 11128-32 (2008)
PM ID: 18056436
542: Yang CK, Kim JH, Ann DK, Stallcup MR
Differential regulation of the two transcriptional activation domains of the coiled-coil coactivator CoCoA by sumoylation.
BMC Mol Biol 9: 12 (2008)
PM ID: 18218142 PMC2263068
543: Zhou B, Zhong Q, Minoo P, Li C, Ann DK, Frenkel B, Morrisey EE, Crandall ED, Borok Z
Foxp2 inhibits Nkx2.1-mediated transcription of SP-C via interactions with the Nkx2.1 homeodomain.
Am J Respir Cell Mol Biol 38: 750-8 (2008)
PM ID: 18239190 PMC2396252
544: Shibata D
Stem cells as common ancestors in a colorectal cancer ancestral tree.
Curr Opin Gastroenterol 24: 59-63 (2008)
PM ID: 18043234
545: Dong D, Ni M, Li JZ, Xiong S, Ye W, Virrey JJ, Mao C, Ye R, Wang M, Pen L, Dubeau L, Groshen S, Hofman FM, Lee AS
Critical role of the stress chaperone GRP78/BiP in tumor proliferation, survival, and tumor angiogenesis in transgene-induced mammary tumor development.
Cancer Res 68: 498-505 (2008)
PM ID: 18199545
546: Plikus MV, Mayer JA, de la Cruz D, Baker RE, Maini PK, Maxson R, Chuong CM
Cyclic dermal BMP signalling regulates stem cell activation during hair regeneration.
Nature 451: 340-4 (2008)
PM ID: 18202659 PMC2696201 NIHMS110153
547: Shibata D
Mistakes make history: visualizing intestinal tectonics.
Gastroenterology 134: 628-31 (2008)
PM ID: 18242228
548: Kim KJ, Choi J, Heo K, Kim HJ, Levens D, Kohno K, Johnson EM, Brock HW, An W
Isolation and characterization of a novel H1.2 complex that acts as a repressor of p53-mediated transcription.
J Biol Chem 283: 9113-26 (2008)
PM ID: 18258596 PMC2431041
549: Sun J, Chen HM, Chen CS, Whitsett JA, Mishina Y, Bringas P, Ma JC, Warburton D, Shi W
Prenatal lung epithelial cell-specific abrogation of Alk3-bone morphogenetic protein signaling causes neonatal respiratory distress by disrupting distal airway formation.
Am J Pathol 172: 571-82 (2008)
PM ID: 18258849 PMC2258256
550: Miller AJ, Dudley SD, Tsao JL, Shibata D, Liskay RM
Tractable Cre-lox system for stochastic alteration of genes in mice.
Nat Methods 5: 227-9 (2008)
PM ID: 18264106 PMC2394730 NIHMS49371
551: Collins RE, Northrop JP, Horton JR, Lee DY, Zhang XK, Stallcup MR, Cheng X
The ankyrin repeats of G9a and GLP histone methyltransferases are mono- and dimethyllysine binding modules.
Nat Struct Mol Biol 15: 245-50 (2008)
PM ID: 18264113 PMC2586904 NIHMS75647
552: Pike BL, Greiner TC, Wang XD, Weisenburger DD, Hsu YH, Renaud G, Wolfsberg TG, Kim MH, Weisenberger DJ, Siegmund KD, Ye W, Groshen S, Mehrian-Shai R, Delabie J, Chan WC, Laird PW, Hacia JG
DNA methylation profiles in diffuse large B-cell lymphoma and their relationship to gene expression status.
Leukemia 22: 1035-43 (2008)
PM ID: 18288132 PMC2654231 NIHMS97202
553: Spektor TM, Rice JC
Ring around the genes.
Nat Cell Biol 9: 1343-4 (2008)
PM ID: 18059356
554: Chen HM, Zhuang FF, Liu YH, Xu B, Del Moral PM, Deng WT, Chai Y, Kolb M, Gauldie J, Warburton D, Moses HL, Shi W
TGF-beta receptor II in epithelia versus mesenchyme plays distinct roles in the developing lung.
Eur Respir J 32: 285-95 (2008)
PM ID: 18321928
555: Cheng CF, Fan J, Bandyopahdhay B, Mock D, Guan S, Chen M, Woodley DT, Li W
Profiling motility signal-specific genes in primary human keratinocytes.
J Invest Dermatol 128: 1981-90 (2008)
PM ID: 18323786
556: Cheng CF, Fan J, Fedesco M, Guan S, Li YT, Bandyopadhyay B, Bright AM, Yerushalmi D, Liang M, Chen M, Han YP, Woodley DT, Li W
Transforming growth factor alpha (TGFalpha)-stimulated secretion of HSP90alpha: using the receptor LRP-1/CD91 to promote human skin cell migration against a TGFbeta-rich environment during wound healing.
Mol Cell Biol 28: 3344-58 (2008)
PM ID: 18332123 PMC2423165
557: Yoo CB, Chuang JC, Byun HM, Egger G, Yang AS, Dubeau L, Long TI, Laird PW, Marquez VE, Jones PA
Long-term epigenetic therapy with oral zebularine has minimal side effects and prevents intestinal tumors in mice.
Cancer Prev Res (Phila Pa) 1: 233-40 (2008)
PM ID: 19138966
558: Takamori K, Hosokawa R, Xu X, Deng X, Bringas P, Chai Y
Epithelial fibroblast growth factor receptor 1 regulates enamel formation.
J Dent Res 87: 238-43 (2008)
PM ID: 18296607
559: Heisterkamp N, Groffen J, Warburton D, Sneddon TP
The human gamma-glutamyltransferase gene family.
Hum Genet 123: 321-32 (2008)
PM ID: 18357469
560: Woiwode A, Johnson SA, Zhong S, Zhang C, Roeder RG, Teichmann M, Johnson DL
PTEN represses RNA polymerase III-dependent transcription by targeting the TFIIIB complex.
Mol Cell Biol 28: 4204-14 (2008)
PM ID: 18391023 PMC2423115
561: Kalakonda N, Fischle W, Boccuni P, Gurvich N, Hoya-Arias R, Zhao X, Miyata Y, Macgrogan D, Zhang J, Sims JK, Rice JC, Nimer SD
Histone H4 lysine 20 monomethylation promotes transcriptional repression by L3MBTL1.
Oncogene 27: 4293-304 (2008)
PM ID: 18408754 PMC2742506 NIHMS124782
562: Chu MW, Siegmund KD, Hao QL, Crooks GM, Tavaré S, Shibata D
Inferring relative numbers of human leucocyte genome replications.
Br J Haematol 141: 862-71 (2008)
PM ID: 18410448
563: Woodley DT, Hou Y, Martin SE, Li W, Chen M
Characterization of molecular mechanisms underlying mutations in dystrophic epidermolysis bullosa using site-directed mutagenesis.
J Biol Chem 283: 17838-45 (2008)
PM ID: 18450758 PMC2440610
564: Robinson PJ, An W, Routh A, Martino F, Chapman L, Roeder RG, Rhodes D
30 nm chromatin fibre decompaction requires both H4-K16 acetylation and linker histone eviction.
J Mol Biol 381: 816-25 (2008)
PM ID: 18653199
565: Gal-Yam EN, Saito Y, Egger G, Jones PA
Cancer epigenetics: modifications, screening, and therapy.
Annu Rev Med 59: 267-80 (2008)
PM ID: 17937590
566: Stern MC, Conti DV, Siegmund KD, Corral R, Yuan JM, Koh WP, Yu MC
DNA repair single-nucleotide polymorphisms in colorectal cancer and their role as modifiers of the effect of cigarette smoking and alcohol in the Singapore Chinese Health Study.
Cancer Epidemiol Biomarkers Prev 16: 2363-72 (2008)
PM ID: 18006925
567: Heo K, Kim HJ, Choi SH, Choi J, Kim KJ, Gu J, Lieber MR, Yang AS, An W
FACT-mediated exchange of histone variant H2AX regulated by phosphorylation of H2AX and ADP-ribosylation of Spt16.
Mol Cell 30: 86-97 (2008)
PM ID: 18406329
568: Johnson DL, Johnson SA
Cell biology. RNA metabolism and oncogenesis.
Science 320: 461-2 (2008)
PM ID: 18436765
569: Johnson SA, Dubeau L, Johnson DL
Enhanced RNA polymerase III-dependent transcription is required for oncogenic transformation.
J Biol Chem 283: 19184-91 (2008)
PM ID: 18456653 PMC2443659
570: Sims JK, Rice JC
PR-Set7 establishes a repressive trans-tail histone code that regulates differentiation.
Mol Cell Biol 28: 4459-68 (2008)
PM ID: 18474616 PMC2447116
571: Houston SI, McManus KJ, Adams MM, Sims JK, Carpenter PB, Hendzel MJ, Rice JC
Catalytic function of the PR-Set7 histone H4 lysine 20 monomethyltransferase is essential for mitotic entry and genomic stability.
J Biol Chem 283: 19478-88 (2008)
PM ID: 18480059 PMC2443654
572: Basile LA, Gallaher TK, Shibata D, Miller JD, Douer D
Multilineage hematopoietic recovery with concomitant antitumor effects using low dose Interleukin-12 in myelosuppressed tumor-bearing mice.
J Transl Med 6: 26 (2008)
PM ID: 18489769 PMC2424034
573: Byun HM, Choi SH, Laird PW, Trinh BN, Siddiqui MA, Marquez VE, Yang AS
2'-Deoxy-N4-[2-(4-nitrophenyl)ethoxycarbonyl]-5-azacytidine: a novel inhibitor of DNA methyltransferase that requires activation by human carboxylesterase 1.
Cancer Lett 266: 238-48 (2008)
PM ID: 18499340 PMC2528876 NIHMS57985
574: Xing Y, Li C, Hu L, Tiozzo C, Li M, Chai Y, Bellusci S, Anderson SA, Minoo P
Mechanisms of TGFbeta inhibition of LUNG endodermal morphogenesis: the role of TbetaRII, Smads, Nkx2.1 and Pten.
Dev Biol 320: 340-50 (2008)
PM ID: 18602626 PMC2597224 NIHMS65745
575: Hacia JG, Lee CC, Jimenez DF, Karaman MW, Ho VV, Siegmund KD, Tarantal AF
Age-related gene expression profiles of rhesus monkey bone marrow-derived mesenchymal stem cells.
J Cell Biochem 103: 1198-210 (2008)
PM ID: 17685434
576: Shan L, Subramaniam M, Emanuel RL, Degan S, Johnston PB, Tefft D, Warburton D, Sunday ME
Centrifugal migration of mesenchymal cells in embryonic lung.
Dev Dyn 237: 750-7 (2008)
PM ID: 18297731
577: Maxson R, Ishii M
The Bmp pathway in skull vault development.
Front Oral Biol 12: 197-208 (2008)
PM ID: 18391502
578: Yuan JM, Chan KK, Coetzee GA, Castelao JE, Watson MA, Bell DA, Wang RH, Yu MC
Genetic determinants in the metabolism of bladder carcinogens in relation to risk of bladder cancer.
Carcinogenesis 29: 1386-93 (2008)
PM ID: 18544563 PMC2720058 NIHMS104621
579: Li JZ, Ni M, Lee B, Barron E, Hinton DR, Lee AS
The unfolded protein response regulator GRP78/BiP is required for endoplasmic reticulum integrity and stress-induced autophagy in mammalian cells.
Cell Death Differ 15: 1460-71 (2008)
PM ID: 18551133 PMC2758056 NIHMS129474
580: Siegmund KD, Marjoram P, Shibata D
Modeling DNA methylation in a population of cancer cells.
Stat Appl Genet Mol Biol 7: Article 18 (2008)
PM ID: 18597664
581: Warburton D
Developmental biology: order in the lung.
Nature 453: 733-5 (2008)
PM ID: 18528385
582: Julien KR, Sumita M, Chen PH, Laird-Offringa IA, Hoogstraten CG
Conformationally restricted nucleotides as a probe of structure-function relationships in RNA.
RNA 14: 1632-43 (2008)
PM ID: 18596252 PMC2491483
583: Virrey JJ, Guan S, Li W, Schönthal AH, Chen TC, Hofman FM
Increased survivin expression confers chemoresistance to tumor-associated endothelial cells.
Am J Pathol 173: 575-85 (2008)
PM ID: 18599610 PMC2475793
584: Anglim PP, Galler JS, Koss MN, Hagen JA, Turla S, Campan M, Weisenberger DJ, Laird PW, Siegmund KD, Laird-Offringa IA
Identification of a panel of sensitive and specific DNA methylation markers for squamous cell lung cancer.
Mol Cancer 7: 62 (2008)
PM ID: 18616821 PMC2483990
585: Weisenberger DJ, Trinh BN, Campan M, Sharma S, Long TI, Ananthnarayan S, Liang G, Esteva FJ, Hortobagyi GN, McCormick F, Jones PA, Laird PW
DNA methylation analysis by digital bisulfite genomic sequencing and digital MethyLight.
Nucleic Acids Res 36: 4689-98 (2008)
PM ID: 18628296 PMC2504308
586: Chen YH, Ishii M, Sucov HM, Maxson RE
Msx1 and Msx2 are required for endothelial-mesenchymal transformation of the atrioventricular cushions and patterning of the atrioventricular myocardium.
BMC Dev Biol 8: 75 (2008)
PM ID: 18667074 PMC2518925
587: Cortez CC, Jones PA
Chromatin, cancer and drug therapies.
Mutat Res 647: 44-51 (2008)
PM ID: 18691602 PMC2631123 [Available on 12/01/09] NIHMS81512 [Available on 12/01/09]
588: Fromm JA, Johnson SA, Johnson DL
Epidermal growth factor receptor 1 (EGFR1) and its variant EGFRvIII regulate TATA-binding protein expression through distinct pathways.
Mol Cell Biol 28: 6483-95 (2008)
PM ID: 18710943 PMC2577416
589: Ding W, Warburton D
Down-regulation of Sprouty2 via p38 MAPK plays a key role in the induction of cellular apoptosis by tumor necrosis factor-alpha.
Biochem Biophys Res Commun 375: 460-4 (2008)
PM ID: 18713620 PMC2575769 [Available on 10/24/09] NIHMS70656 [Available on 10/24/09]
590: Carraro G, Perin L, Sedrakyan S, Giuliani S, Tiozzo C, Lee JW, Turcatel G, De Langhe SP, Driscoll B, Bellusci S, Minoo P, Atala A, De Filippo RE, Warburton D
Human amniotic fluid stem cells can integrate and differentiate into epithelial lung lineages.
Stem Cells 26: 2902-11 (2008)
PM ID: 18719226
591: Gal-Yam EN, Egger G, Iniguez L, Holster H, Einarsson S, Zhang XK, Lin JC, Liang G, Jones PA, Tanay A
Frequent switching of Polycomb repressive marks and DNA hypermethylation in the PC3 prostate cancer cell line.
Proc Natl Acad Sci U S A 105: 12979-84 (2008)
PM ID: 18753622 PMC2529074
592: Khalid O, Baniwal SK, Purcell DJ, Leclerc N, Gabet Y, Stallcup MR, Coetzee GA, Frenkel B
Modulation of Runx2 activity by estrogen receptor-alpha: implications for osteoporosis and breast cancer.
Endocrinology 149: 5984-95 (2008)
PM ID: 18755791 PMC2613062 [Available on 12/01/09]
593: Wang LC, Okitsu CY, Kochounian HH, Rodriguez A, Hsieh CL, Zandi E
A simple and inexpensive on-column frit fabrication method for fused-silica capillaries for increased capacity and versatility in LC-MS/MS applications.
Proteomics 8: 1758-61 (2008)
PM ID: 18384106
594: Jiang X, Castelao JE, Groshen S, Cortessis VK, Shibata DK, Conti DV, Gago-Dominguez M
Water intake and bladder cancer risk in Los Angeles County.
Int J Cancer 123: 1649-56 (2008)
PM ID: 18623082
595: Xu X, Han J, Ito Y, Bringas P, Deng C, Chai Y
Ectodermal Smad4 and p38 MAPK are functionally redundant in mediating TGF-beta/BMP signaling during tooth and palate development.
Dev Cell 15: 322-9 (2008)
PM ID: 18694570 PMC2610417 NIHMS66185
596: Virrey JJ, Dong D, Stiles C, Patterson JB, Pen L, Ni M, Schönthal AH, Chen TC, Hofman FM, Lee AS
Stress chaperone GRP78/BiP confers chemoresistance to tumor-associated endothelial cells.
Mol Cancer Res 6: 1268-75 (2008)
PM ID: 18708359 PMC2593417 NIHMS72229
597: Kim JH, Yang CK, Heo K, Roeder RG, An W, Stallcup MR
CCAR1, a key regulator of mediator complex recruitment to nuclear receptor transcription complexes.
Mol Cell 31: 510-9 (2008)
PM ID: 18722177 PMC2562329 NIHMS64408
598: Yeung BH, Kwan BW, He QY, Lee AS, Liu JF, Wong AS
Glucose-regulated protein 78 as a novel effector of BRCA1 for inhibiting stress-induced apoptosis.
Oncogene 27: 6782-9 (2008)
PM ID: 18776923
599: Lopes EC, Valls E, Figueroa ME, Mazur A, Meng FG, Chiosis G, Laird PW, Schreiber-Agus N, Greally JM, Prokhortchouk E, Melnick A
Kaiso contributes to DNA methylation-dependent silencing of tumor suppressor genes in colon cancer cell lines.
Cancer Res 68: 7258-63 (2008)
PM ID: 18794111
600: Mayer JA, Foley J, de la Cruz D, Chuong CM, Widelitz RB
Conversion of the nipple to hair-bearing epithelia by lowering bone morphogenetic protein pathway activity at the dermal-epidermal interface.
Am J Pathol 173: 1339-48 (2008)
PM ID: 18832580 PMC2570124
601: Anglim PP, Alonzo TA, Laird-Offringa IA
DNA methylation-based biomarkers for early detection of non-small cell lung cancer: an update.
Mol Cancer 7: 81 (2008)
PM ID: 18947422 PMC2585582
602: McIntosh M, Anderson GL, Drescher C, Hanash S, Urban N, Brown PO, Gambhir SS, Coukos G, Laird PW, Nelson B, Palmer C
Ovarian cancer early detection claims are biased.
Clin Cancer Res 14: 7574; author reply 7577-9 (2008)
PM ID: 18948385
603: Finney BA, Del Moral PM, Wilkinson WJ, Cayzac S, Cole M, Warburton D, Kemp PJ, Riccardi D
Regulation of mouse lung development by the extracellular calcium-sensing receptor, CaR.
J Physiol 586: 6007-19 (2008)
PM ID: 18955379 PMC2655418 [Available on 12/15/09]
604: Magda D, Lecane PS, Prescott J, Thiemann P, Ma X, Dranchak PK, Toleno DM, Ramaswamy K, Siegmund KD, Hacia JG
mtDNA depletion confers specific gene expression profiles in human cells grown in culture and in xenograft.
BMC Genomics 9: 521 (2008)
PM ID: 18980691 PMC2612029
605: Jia L, Berman BP, Jariwala U, Yan X, Cogan JP, Walters A, Chen T, Buchanan G, Frenkel B, Coetzee GA
Genomic androgen receptor-occupied regions with different functions, defined by histone acetylation, coregulators and transcriptional capacity.
PLoS One 3: e3645 (2008)
PM ID: 18997859 PMC2577007
606: Joshi AD, Corral R, Siegmund KD, Haile RW, Le Marchand L, Martínez ME, Ahnen DJ, Sandler RS, Lance P, Stern MC
Red meat and poultry intake, polymorphisms in the nucleotide excision repair and mismatch repair pathways and colorectal cancer risk.
Carcinogenesis 30: 472-9 (2008)
PM ID: 19029193 PMC2722151 [Available on 03/01/10]
607: Fu Y, Wey S, Wang M, Ye R, Liao CP, Roy-Burman P, Lee AS
Pten null prostate tumorigenesis and AKT activation are blocked by targeted knockout of ER chaperone GRP78/BiP in prostate epithelium.
Proc Natl Acad Sci U S A 105: 19444-9 (2008)
PM ID: 19033462 PMC2614780
608: Rich RL, Papalia GA, Flynn PJ, Furneisen J, Quinn JA, Klein JS, Katsamba PS, Waddell MB, Scott ML, Thompson JR, Berlier J, Corry S, Baltzinger M, Zeder-Lutz G, Schoenemann A, Clabbers A, Wieckowski S, Murphy MM, Page P, Ryan TE, Duffner J, Ganguly T, Corbin J, Gautam S, Anderluh G, Bavdek A, Reichmann D, Yadav SP, Hommema E, Pol E, Drake A, Klakamp S, Chapman T, Kernaghan D, Miller KD, Schuman J, Lindquist KC, Herlihy K, Murphy MB, Bohnsack R, Andrien B, Brandani P, Terwey D, Millican R, Darling RJ, Wang L, Carter Q, Dotzlaf J, Lopez-Sagaseta J, Campbell I, Torreri P, Hoos S, England P, Liu Y, Abdiche Y, Malashock D, Pinkerton A, Wong MM, Lafer E, Hinck C, Thompson K, Primo CD, Joyce A, Brooks J, Torta F, Bagge Hagel AB, Krarup J, Pass J, Ferreira MA, Shikov S, Mikolajczyk M, Abe Y, Barbato G, Giannetti AM, Krishnamoorthy G, Beusink B, Satpaev D, Tsang T, Fang E, Partridge J, Brohawn S, Horn J, Pritsch O, Obal G, Nilapwar S, Busby B, Gutierrez-Sanchez G, Gupta RD, Canepa S, Witte K, Nikolovska-Coleska Z, Cho YH, D'Agata R, Schlick K, Calvert R, Munoz EM, Hernaiz MJ, Bravman T, Dines M, Yang MH, Puskas A, Boni E, Li JZ, Wear M, Grinberg A, Baardsnes J, Dolezal O, Gainey M, Anderson H, Peng J, Lewis MA, Spies P, Trinh Q, Bibikov S, Raymond J, Yousef M, Chandrasekaran V, Feng Y, Emerick A, Mundodo S, Guimaraes R, McGirr K, Li YJ, Hughes H, Mantz H, Skrabana R, Witmer M, Ballard J, Martin L, Skladal P, Korza G, Laird-Offringa IA, Lee CS, Khadir A, Podlaski F, Neuner P, Rothacker J, Rafique A, Dankbar N, Kainz P, Gedig E, Vuyisich M, Boozer C, Ly N, Toews M, Uren A, Kalyuzhniy O, Lewis KD, Chomey E, Pak BJ, Myszka DG
A global benchmark study using affinity-based biosensors.
Anal Biochem 386: 194-216 (2008)
PM ID: 19133223
609: Tsou JA, Kazarian M, Patel AV, Galler JS, Laird-Offringa IA, Carpenter CL, London SJ
Low level anti-Hu reactivity: A risk marker for small cell lung cancer?
Cancer Detect Prev 32: 292-9 (2008)
PM ID: 19070439
610: Tsai AG, Lu H, Raghavan SC, Muschen M, Hsieh CL, Lieber MR
Human chromosomal translocations at CpG sites and a theoretical basis for their lineage and stage specificity.
Cell 135: 1130-42 (2008)
PM ID: 19070581 PMC2642632 [Available on 12/12/09] NIHMS84558 [Available on 12/12/09]
611: Li P, Tong C, Mehrian-Shai R, Jia L, Wu N, Yan Y, Maxson RE, Schulze EN, Song H, Hsieh CL, Pera MF, Ying QL
Germline competent embryonic stem cells derived from rat blastocysts.
Cell 135: 1299-310 (2009)
PM ID: 19109898 PMC2735113 NIHMS131481
612: Lee YH, Stallcup MR
Minireview: protein arginine methylation of nonhistone proteins in transcriptional regulation.
Mol Endocrinol 23: 425-33 (2009)
PM ID: 19164444 PMC2667706 [Available on 04/01/10]
613: Jiang X, Castelao JE, Groshen S, Cortessis VK, Shibata D, Conti DV, Yuan JM, Pike MC, Gago-Dominguez M
Urinary tract infections and reduced risk of bladder cancer in Los Angeles.
Br J Cancer 100: 834-9 (2009)
PM ID: 19174821 PMC2653778 [Available on 03/10/10]
614: Haiman CA, Garcia RR, Hsu CP, Xia L, Ha H, Sheng X, Le Marchand L, Kolonel LN, Henderson BE, Stallcup MR, Greene GL, Press MF
Screening and association testing of common coding variation in steroid hormone receptor co-activator and co-repressor genes in relation to breast cancer risk: the Multiethnic Cohort.
BMC Cancer 9: 43 (2009)
PM ID: 19183483 PMC2637888
615: Poynter JN, Siegmund KD, Weisenberger DJ, Long TI, Thibodeau SN, Lindor NM, Young JP, Jenkins MA, Hopper JL, Baron JA, Buchanan D, Casey GR, Levine AJ, Le Marchand L, Gallinger S, Bapat B, Potter JD, Newcomb PA, Haile RW, Laird PW, Colon Cancer Family Registry Investigators
Molecular characterization of MSI-H colorectal cancer by MLHI promoter methylation, immunohistochemistry, and mismatch repair germline mutation screening.
Cancer Epidemiol Biomarkers Prev 17: 3208-15 (2009)
PM ID: 18990764 PMC2628332 [Available on 11/01/09] NIHMS80565 [Available on 11/01/09]
616: Jariwala U, Cogan JP, Jia L, Frenkel B, Coetzee GA
Inhibition of AR-mediated transcription by binding of Oct1 to a motif enriched in AR-occupied regions.
Prostate 69: 392-400 (2009)
PM ID: 19058140 PMC2743387 NIHMS129716
617: Wang Y, Maciejewski BS, Soto-Reyes D, Lee HS, Warburton D, Sanchez-Esteban J
Mechanical stretch promotes fetal type II epithelial cell differentiation via shedding of HB-EGF and TGF-alpha.
J Physiol 587: 1739-53 (2009)
PM ID: 19237431 PMC2683961 [Available on 04/15/10]
618: Guan S, Fan J, Han A, Chen M, Woodley DT, Li W
Non-compensating roles between Nckalpha and Nckbeta in PDGF-BB signaling to promote human dermal fibroblast migration.
J Invest Dermatol 129: 1909-20 (2009)
PM ID: 19242519
619: Campan M, Weisenberger DJ, Trinh BN, Laird PW
MethyLight.
Methods Mol Biol 507: 325-37 (2009)
PM ID: 18987824
620: Woo YJ, Siegmund KD, Tavaré S, Shibata D
Older individuals appear to acquire mitotically older colorectal cancers.
J Pathol 217: 483-8 (2009)
PM ID: 19165870
621: Chuong CM, Widelitz RB
The river of stem cells.
Cell Stem Cell 4: 100-2 (2009)
PM ID: 19200797
622: Zhang ZY, Lan Y, Chai Y, Jiang R
Antagonistic actions of Msx1 and Osr2 pattern mammalian teeth into a single row.
Science 323: 1232-4 (2009)
PM ID: 19251632 PMC2650836 [Available on 02/27/10] NIHMS88200 [Available on 02/27/10]
623: Bapat B, Lindor NM, Baron JA, Siegmund KD, Li L, Zheng YT, Haile R, Gallinger S, Jass JR, Young JP, Cotterchio M, Jenkins MA, Grove J, Casey GR, Thibodeau SN, Bishop DT, Hopper JL, Ahnen DJ, Newcomb PA, Le Marchand L, Potter JD, Seminara D, Colon Cancer Family Registry
The association of tumor microsatellite instability phenotype with family history of colorectal cancer.
Cancer Epidemiol Biomarkers Prev 18: 967-75 (2009)
PM ID: 19258475 PMC2763617 [Available on 03/01/10] NIHMS139549 [Available on 03/01/10]
624: Siegmund KD, Marjoram P, Woo YJ, Tavaré S, Shibata D
Inferring clonal expansion and cancer stem cell dynamics from DNA methylation patterns in colorectal cancers.
Proc Natl Acad Sci U S A 106: 4828-33 (2009)
PM ID: 19261858 PMC2651202
625: Toleno DM, Renaud G, Wolfsberg TG, Islam M, Wildman DE, Siegmund KD, Hacia JG
Development and evaluation of new mask protocols for gene expression profiling in humans and chimpanzees.
BMC Bioinformatics 10: 77 (2009)
PM ID: 19265541 PMC2660304
626: Zhou L, Yan C, Gieling RG, Kida Y, Garner WL, Li W, Han YP
Tumor necrosis factor-alpha induced expression of matrix metalloproteinase-9 through p21-activated kinase-1.
BMC Immunol 10: 15 (2009)
PM ID: 19298660 PMC2669056
627: Yoo CB, Valente R, Congiatu C, Gavazza F, Angel A, Siddiqui MA, Jones PA, McGuigan C, Marquez VE
Activation of p16 gene silenced by DNA methylation in cancer cells by phosphoramidate derivatives of 2'-deoxyzebularine.
J Med Chem 51: 7593-601 (2009)
PM ID: 19006382 PMC2659950 [Available on 12/11/09] NIHMS90725 [Available on 12/11/09]
628: Asahina K, Tsai SY, Li P, Ishii M, Maxson RE, Sucov HM, Tsukamoto H
Mesenchymal origin of hepatic stellate cells, submesothelial cells, and perivascular mesenchymal cells during mouse liver development.
Hepatology 49: 998-1011 (2009)
PM ID: 19085956 PMC2673117 [Available on 03/01/10] NIHMS98872 [Available on 03/01/10]
629: Sohn KJ, Jang H, Campan M, Weisenberger DJ, Dickhout J, Wang YC, Cho RC, Yates Z, Lucock M, Chiang EP, Austin RC, Choi SW, Laird PW, Kim YI
The methylenetetrahydrofolate reductase C677T mutation induces cell-specific changes in genomic DNA methylation and uracil misincorporation: a possible molecular basis for the site-specific cancer risk modification.
Int J Cancer 124: 1999-2005 (2009)
PM ID: 19123462 PMC2692263 [Available on 05/01/10] NIHMS99332 [Available on 05/01/10]
630: Shi SR, Chai Y, Slavkin HC
Emerging opportunities for the next generation of dental implants?
Dent Today 28: 98-9 (2009)
PM ID: 19323323
631: Woodley DT, Fan J, Cheng CF, Li YT, Chen M, Bu G, Li W
Participation of the lipoprotein receptor LRP1 in hypoxia-HSP90alpha autocrine signaling to promote keratinocyte migration.
J Cell Sci 122: 1495-8 (2009)
PM ID: 19383717 PMC2680098 [Available on 05/15/10]
632: Baniwal SK, Khalid O, Sir D, Buchanan G, Coetzee GA, Frenkel B
Repression of Runx2 by androgen receptor (AR) in osteoblasts and prostate cancer cells: AR binds Runx2 and abrogates its recruitment to DNA.
Mol Endocrinol 23: 1203-14 (2009)
PM ID: 19389811 PMC2718746 [Available on 08/01/10]
633: Aparicio AM, North B, Barske L, Wang XD, Bollati V, Weisenberger DJ, Yoo CB, Tannir N, Horne E, Groshen S, Jones PA, Yang AJ, Issa JP
LINE-1 methylation in plasma DNA as a biomarker of activity of DNA methylation inhibitors in patients with solid tumors.
Epigenetics 4: 176-84 (2009)
PM ID: 19421002
634: Ting MC, Wu NL, Roybal PG, Sun J, Liu L, Yen Y, Maxson RE
EphA4 as an effector of Twist1 in the guidance of osteogenic precursor cells during calvarial bone growth and in craniosynostosis.
Development 136: 855-64 (2009)
PM ID: 19201948 PMC2685950 NIHMS131479
635: Friedman JM, Liang G, Liu CC, Wolff EM, Tsai YC, Ye W, Zhou XJ, Jones PA
The putative tumor suppressor microRNA-101 modulates the cancer epigenome by repressing the polycomb group protein EZH2.
Cancer Res 69: 2623-9 (2009)
PM ID: 19258506
636: Noh T, Gabet Y, Cogan JP, Shi Y, Tank A, Sasaki T, Criswell B, Dixon A, Lee CT, Tam J, Kohler T, Segev E, Kockeritz L, Woodgett JR, Müller R, Chai Y, Smith E, Bab I, Frenkel B
Lef1 haploinsufficient mice display a low turnover and low bone mass phenotype in a gender- and age-specific manner.
PLoS One 4: e5438 (2009)
PM ID: 19412553 PMC2673053
637: Chung IH, Yamaza T, Zhao H, Choung PH, Shi SR, Chai Y
Stem cell property of postmigratory cranial neural crest cells and their utility in alveolar bone regeneration and tooth development.
Stem Cells 27: 866-77 (2009)
PM ID: 19350689
638: Berman BP, Weisenberger DJ, Laird PW
Locking in on the human methylome.
Nat Biotechnol 27: 341-2 (2009)
PM ID: 19352369
639: Miranda TB, Cortez CC, Yoo CB, Liang G, Abe M, Kelly TK, Marquez VE, Jones PA
DZNep is a global histone methylation inhibitor that reactivates developmental genes not silenced by DNA methylation.
Mol Cancer Ther 8: 1579-88 (2009)
PM ID: 19509260
640: Ou CY, Kim JH, Yang CK, Stallcup MR
Requirement of cell cycle and apoptosis regulator 1 for target gene activation by Wnt and beta-catenin and for anchorage-independent growth of human colon carcinoma cells.
J Biol Chem 284: 20629-37 (2009)
PM ID: 19520846 PMC2742827 [Available on 07/31/10]
641: Pomerantz MM, Ahmadiyeh N, Jia L, Herman P, Verzi MP, Doddapaneni H, Beckwith CA, Chan JA, Hills A, Davis M, Yao KL, Kehoe SM, Lenz HJ, Haiman CA, Yan C, Henderson BE, Frenkel B, Barretina J, Bass A, Tabernero J, Baselga J, Regan MM, Manak JR, Shivdasani R, Coetzee GA, Freedman ML
The 8q24 cancer risk variant rs6983267 shows long-range interaction with MYC in colorectal cancer.
Nat Genet 41: 882-4 (2009)
PM ID: 19561607 PMC2763485 [Available on 02/01/10] NIHMS120360 [Available on 02/01/10]
642: Bouazoune K, Miranda TB, Jones PA, Kingston RE
Analysis of individual remodeled nucleosomes reveals decreased histone-DNA contacts created by hSWI/SNF.
Nucleic Acids Res 37: 5279-94 (2009)
PM ID: 19567737 PMC2760786
643: Berman BP, Frenkel B, Coetzee GA
Location, location, (ChIP-)location! Mapping chromatin landscapes one immunoprecipitation at a time.
J Cell Biochem 107: 1-5 (2009)
PM ID: 19308935 PMC2748114 [Available on 05/01/10] NIHMS136755 [Available on 05/01/10]
644: Youssef RF, Mitra AP, Bartsch G, Jones PA, Skinner DG, Cote RJ
Molecular targets and targeted therapies in bladder cancer management.
World J Urol 27: 9-20 (2009)
PM ID: 19039591
645: Plikus MV, Widelitz RB, Maxson R, Chuong CM
Analyses of regenerative wave patterns in adult hair follicle populations reveal macro-environmental regulation of stem cell activity.
Int J Dev Biol 53: 857-68 (2009)
PM ID: 19378257 PMC2759942 NIHMS131491
646: Wang M, Wey S, Zhang Y, Ye R, Lee AS
Role of the Unfolded Protein Response Regulator GRP78/BiP in Development, Cancer and Neurological Disorders.
Antioxid Redox Signal : (2009)
PM ID: 19309259
647: Baumeister P, Dong D, Fu Y, Lee AS
Transcriptional induction of GRP78/BiP by histone deacetylase inhibitors and resistance to histone deacetylase inhibitor-induced apoptosis.
Mol Cancer Ther : (2009)
PM ID: 19417144