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USC Norris Comprehensive Cancer Center
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Publications for Norris Cancer Center Members in the Epigenetics and Regulation Program

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Total Number of Publications: 507
Inter Programmatic Publications: 178
Intra Programmatic Publications: 83

1: Tsou JA, Kazarian M, Patel A, Galler JS, Laird-Offringa IA, Carpenter CL, London SJ
Low level anti-Hu reactivity: A risk marker for small cell lung cancer?
Cancer Detect Prev 32: 292-9 (2009)
PM ID: 19070439 PMC2952929 NIHMS87928
2: Haiman CA, Garcia RR, Hsu C, Xia L, Ha H, Sheng X, Le Marchand L, Kolonel LN, Henderson BE, Stallcup MR, Greene GL, Press MF
Screening and association testing of common coding variation in steroid hormone receptor co-activator and co-repressor genes in relation to breast cancer risk: the Multiethnic Cohort.
BMC Cancer 9: 43 (2009)
PM ID: 19183483 PMC2637888
3: Plikus MV, Widelitz RB, Maxson R, Chuong CM
Analyses of regenerative wave patterns in adult hair follicle populations reveal macro-environmental regulation of stem cell activity.
Int J Dev Biol 53: 857-68 (2009)
PM ID: 19378257 PMC2759942 NIHMS131491
4: Campan M, Weisenberger DJ, Trinh B, Laird PW
Methods Mol Biol 507: 325-37 (2009)
PM ID: 18987824
5: Noh T, Gabet Y, Cogan J, Shi Y, Tank A, Sasaki T, Criswell B, Dixon A, Lee C, Tam J, Kohler T, Segev E, Kockeritz L, Woodgett J, Müller R, Chai Y, Smith E, Bab I, Frenkel B
Lef1 haploinsufficient mice display a low turnover and low bone mass phenotype in a gender- and age-specific manner.
PLoS One 4: e5438 (2009)
PM ID: 19412553 PMC2673053
6: Zhou L, Yan C, Gieling RG, Kida Y, Garner W, Li W, Han YP
Tumor necrosis factor-alpha induced expression of matrix metalloproteinase-9 through p21-activated kinase-1.
BMC Immunol 10: 15 (2009)
PM ID: 19298660 PMC2669056
7: Toleno DM, Renaud G, Wolfsberg TG, Islam M, Wildman DE, Siegmund KD, Hacia JG
Development and evaluation of new mask protocols for gene expression profiling in humans and chimpanzees.
BMC Bioinformatics 10: 77 (2009)
PM ID: 19265541 PMC2660304
8: Ni M, Zhou H, Wey S, Baumeister P, Lee AS
Regulation of PERK signaling and leukemic cell survival by a novel cytosolic isoform of the UPR regulator GRP78/BiP.
PLoS One 4: e6868 (2009)
PM ID: 19718440 PMC2729930
9: Joo J, Christensen L, Warner K, States L, Kang HG, Vo K, Lawlor ER, May WA
GLI1 is a central mediator of EWS/FLI1 signaling in Ewing tumors.
PLoS One 4: e7608 (2009)
PM ID: 19859563 PMC2763206
10: Hinoue T, Weisenberger DJ, Pan F, Campan M, Kim M, Young J, Whitehall VL, Leggett BA, Laird PW
Analysis of the association between CIMP and BRAF in colorectal cancer by DNA methylation profiling.
PLoS One 4: e8357 (2009)
PM ID: 20027224 PMC2791229
11: Shtir C, Pique-Regi R, Siegmund K, Morrison J, Schumacher F, Marjoram P
Copy number variation in the Framingham Heart Study.
BMC Proc 3 Suppl 7: S133 (2009)
PM ID: 20018000 PMC2795907
12: Borok Z
Role for alpha3 integrin in EMT and pulmonary fibrosis.
J Clin Invest 119: 7-10 (2009)
PM ID: 19104143 PMC2613449
13: Youssef RF, Mitra AP, Bartsch G, Jones PA, Skinner DG, Cote RJ
Molecular targets and targeted therapies in bladder cancer management.
World J Urol 27: 9-20 (2009)
PM ID: 19039591
14: Chen JL, Lin HH, Kim KJ, Lin A, Ou JH, Ann DK
PKC delta signaling: a dual role in regulating hypoxic stress-induced autophagy and apoptosis.
Autophagy 5: 244-6 (2009)
PM ID: 19098423 PMC2743529 NIHMS123596
15: Saito Y, Friedman JM, Chihara Y, Egger G, Chuang JC, Liang G
Epigenetic therapy upregulates the tumor suppressor microRNA-126 and its host gene EGFL7 in human cancer cells.
Biochem Biophys Res Commun 379: 726-31 (2009)
PM ID: 19116145
16: Zhang Z, Lan Y, Chai Y, Jiang R
Antagonistic actions of Msx1 and Osr2 pattern mammalian teeth into a single row.
Science 323: 1232-4 (2009)
PM ID: 19251632 PMC2650836 NIHMS88200
17: Chuong CM, Widelitz RB
The river of stem cells.
Cell Stem Cell 4: 100-2 (2009)
PM ID: 19200797
18: Rountree CB, Ding W, He L, Stiles B
Expansion of CD133-expressing liver cancer stem cells in liver-specific phosphatase and tensin homolog deleted on chromosome 10-deleted mice.
Stem Cells 27: 290-9 (2009)
PM ID: 19008348 PMC2847372 NIHMS187510
19: Wong AK, Mei L, Soares MA, Schönmeyr BH, Mehrara BJ
Radioprotection of osteoblasts by a fractionated dose regimen and amifostine.
Plast Reconstr Surg 123: 104S-13S (2009)
PM ID: 19182669
20: Asahina K, Tsai SY, Li P, Ishii M, Maxson RE, Sucov HM, Tsukamoto H
Mesenchymal origin of hepatic stellate cells, submesothelial cells, and perivascular mesenchymal cells during mouse liver development.
Hepatology 49: 998-1011 (2009)
PM ID: 19085956 PMC2673117 NIHMS98872
21: Jariwala U, Cogan JP, Jia L, Frenkel B, Coetzee GA
Inhibition of AR-mediated transcription by binding of Oct1 to a motif enriched in AR-occupied regions.
Prostate 69: 392-400 (2009)
PM ID: 19058140 PMC2743387 NIHMS129716
22: Joshi AD, Corral R, Siegmund KD, Haile RW, Le Marchand L, Martínez ME, Ahnen DJ, Sandler RS, Lance P, Stern MC
Red meat and poultry intake, polymorphisms in the nucleotide excision repair and mismatch repair pathways and colorectal cancer risk.
Carcinogenesis 30: 472-9 (2009)
PM ID: 19029193 PMC2722151
23: Ting MC, Wu NL, Roybal PG, Sun J, Liu L, Yen Y, Maxson RE
EphA4 as an effector of Twist1 in the guidance of osteogenic precursor cells during calvarial bone growth and in craniosynostosis.
Development 136: 855-64 (2009)
PM ID: 19201948 PMC2685950 NIHMS131479
24: Friedman JM, Liang G, Liu CC, Wolff EM, Tsai YC, Ye W, Zhou X, Jones PA
The putative tumor suppressor microRNA-101 modulates the cancer epigenome by repressing the polycomb group protein EZH2.
Cancer Res 69: 2623-9 (2009)
PM ID: 19258506
25: Siegmund KD, Marjoram P, Woo YJ, Tavaré S, Shibata D
Inferring clonal expansion and cancer stem cell dynamics from DNA methylation patterns in colorectal cancers.
Proc Natl Acad Sci U S A 106: 4828-33 (2009)
PM ID: 19261858 PMC2651202
26: Woo YJ, Siegmund KD, Tavaré S, Shibata D
Older individuals appear to acquire mitotically older colorectal cancers.
J Pathol 217: 483-8 (2009)
PM ID: 19165870
27: Bapat B, Lindor NM, Baron J, Siegmund K, Li L, Zheng Y, Haile R, Gallinger S, Jass JR, Young JP, Cotterchio M, Jenkins M, Grove J, Casey G, Thibodeau SN, Bishop DT, Hopper JL, Ahnen D, Newcomb PA, Le Marchand L, Potter JD, Seminara D, Colon Cancer Family Registry
The association of tumor microsatellite instability phenotype with family history of colorectal cancer.
Cancer Epidemiol Biomarkers Prev 18: 967-75 (2009)
PM ID: 19258475 PMC2763617 NIHMS139549
28: Shi S, Chai Y, Slavkin H
Emerging opportunities for the next generation of dental implants?
Dent Today 28: 98-9 (2009)
PM ID: 19323323
29: Patel LN, Wang J, Kim KJ, Borok Z, Crandall ED, Shen WC
Conjugation with cationic cell-penetrating peptide increases pulmonary absorption of insulin.
Mol Pharm 6: 492-503 (2009)
PM ID: 19228019 PMC2798810 NIHMS96766
30: Lee YH, Stallcup MR
Minireview: protein arginine methylation of nonhistone proteins in transcriptional regulation.
Mol Endocrinol 23: 425-33 (2009)
PM ID: 19164444 PMC2667706
31: Aparicio A, North B, Barske L, Wang X, Bollati V, Weisenberger D, Yoo C, Tannir N, Horne E, Groshen S, Jones P, Yang A, Issa JP
LINE-1 methylation in plasma DNA as a biomarker of activity of DNA methylation inhibitors in patients with solid tumors.
Epigenetics 4: 176-84 (2009)
PM ID: 19421002 PMC2848123 NIHMS184539
32: Berman BP, Weisenberger DJ, Laird PW
Locking in on the human methylome.
Nat Biotechnol 27: 341-2 (2009)
PM ID: 19352369
33: Chung IH, Yamaza T, Zhao H, Choung PH, Shi S, Chai Y
Stem cell property of postmigratory cranial neural crest cells and their utility in alveolar bone regeneration and tooth development.
Stem Cells 27: 866-77 (2009)
PM ID: 19350689 PMC2896558 NIHMS214227
34: Stiles BL
Phosphatase and tensin homologue deleted on chromosome 10: extending its PTENtacles.
Int J Biochem Cell Biol 41: 757-61 (2009)
PM ID: 18950730 PMC2940266 NIHMS99348
35: Sohn KJ, Jang H, Campan M, Weisenberger DJ, Dickhout J, Wang YC, Cho RC, Yates Z, Lucock M, Chiang EP, Austin RC, Choi SW, Laird PW, Kim YI
The methylenetetrahydrofolate reductase C677T mutation induces cell-specific changes in genomic DNA methylation and uracil misincorporation: a possible molecular basis for the site-specific cancer risk modification.
Int J Cancer 124: 1999-2005 (2009)
PM ID: 19123462 PMC2692263 NIHMS99332
36: Kumar SR, Scehnet JS, Ley EJ, Singh J, Krasnoperov V, Liu R, Manchanda PK, Ladner RD, Hawes D, Weaver FA, Beart RW, Singh G, Nguyen C, Kahn M, Gill PS
Preferential induction of EphB4 over EphB2 and its implication in colorectal cancer progression.
Cancer Res 69: 3736-45 (2009)
PM ID: 19366806
37: Baumeister P, Dong D, Fu Y, Lee AS
Transcriptional induction of GRP78/BiP by histone deacetylase inhibitors and resistance to histone deacetylase inhibitor-induced apoptosis.
Mol Cancer Ther 8: 1086-94 (2009)
PM ID: 19417144 PMC2889001 NIHMS131011
38: Berman BP, Frenkel B, Coetzee GA
Location, location, (ChIP-)location! Mapping chromatin landscapes one immunoprecipitation at a time.
J Cell Biochem 107: 1-5 (2009)
PM ID: 19308935 PMC2748114 NIHMS136755
39: Woodley DT, Fan J, Cheng CF, Li Y, Chen M, Bu G, Li W
Participation of the lipoprotein receptor LRP1 in hypoxia-HSP90alpha autocrine signaling to promote keratinocyte migration.
J Cell Sci 122: 1495-8 (2009)
PM ID: 19383717 PMC2680098
40: Lyu J, Wesselschmidt RL, Lu W
Cdc37 regulates Ryk signaling by stabilizing the cleaved Ryk intracellular domain.
J Biol Chem 284: 12940-8 (2009)
PM ID: 19269974 PMC2676025
41: Miranda TB, Cortez CC, Yoo CB, Liang G, Abe M, Kelly TK, Marquez VE, Jones PA
DZNep is a global histone methylation inhibitor that reactivates developmental genes not silenced by DNA methylation.
Mol Cancer Ther 8: 1579-88 (2009)
PM ID: 19509260 PMC3186068 NIHMS325029
42: Demaio L, Tseng W, Balverde Z, Alvarez JR, Kim KJ, Kelley DG, Senior RM, Crandall ED, Borok Z
Characterization of mouse alveolar epithelial cell monolayers.
Am J Physiol Lung Cell Mol Physiol 296: L1051-8 (2009)
PM ID: 19329539 PMC2692796
43: Ou CY, Kim JH, Yang CK, Stallcup MR
Requirement of cell cycle and apoptosis regulator 1 for target gene activation by Wnt and beta-catenin and for anchorage-independent growth of human colon carcinoma cells.
J Biol Chem 284: 20629-37 (2009)
PM ID: 19520846 PMC2742827
44: Siegmund KD, Marjoram P, Tavaré S, Shibata D
Many colorectal cancers are "flat" clonal expansions.
Cell Cycle 8: 2187-93 (2009)
PM ID: 19556889
45: Rosol M, Harutyunyan I, Xu J, Melendez E, Smbatyan G, Finlay JL, Krieger MD, Gonzalez-Gomez I, Reynolds CP, Nelson MD, Erdreich-Epstein A, Blüml S
Metabolism of orthotopic mouse brain tumor models.
Mol Imaging 8: 199-208 (2009)
PM ID: 19728974
46: Butturini AM, Jacob M, Aguajo J, Vander-Walde NA, Villablanca J, Jubran R, Erdreich-Epstein A, Marachelian A, Dhall G, Finlay JL
High-dose chemotherapy and autologous hematopoietic progenitor cell rescue in children with recurrent medulloblastoma and supratentorial primitive neuroectodermal tumors: the impact of prior radiotherapy on outcome.
Cancer 115: 2956-63 (2009)
PM ID: 19402050
47: Li AY, Boo LM, Wang SY, Lin HH, Wang CC, Yen Y, Chen BP, Chen DJ, Ann DK
Suppression of nonhomologous end joining repair by overexpression of HMGA2.
Cancer Res 69: 5699-706 (2009)
PM ID: 19549901 PMC2737594 NIHMS119606
48: Kim H, Heo K, Kim JH, Kim K, Choi J, An W
Requirement of histone methyltransferase SMYD3 for estrogen receptor-mediated transcription.
J Biol Chem 284: 19867-77 (2009)
PM ID: 19509295 PMC2740412
49: Baniwal SK, Khalid O, Sir D, Buchanan G, Coetzee GA, Frenkel B
Repression of Runx2 by androgen receptor (AR) in osteoblasts and prostate cancer cells: AR binds Runx2 and abrogates its recruitment to DNA.
Mol Endocrinol 23: 1203-14 (2009)
PM ID: 19389811 PMC2718746
50: Pomerantz MM, Ahmadiyeh N, Jia L, Herman P, Verzi MP, Doddapaneni H, Beckwith CA, Chan JA, Hills A, Davis M, Yao K, Kehoe SM, Lenz HJ, Haiman CA, Yan C, Henderson BE, Frenkel B, Barretina J, Bass A, Tabernero J, Baselga J, Regan MM, Manak JR, Shivdasani R, Coetzee GA, Freedman ML
The 8q24 cancer risk variant rs6983267 shows long-range interaction with MYC in colorectal cancer.
Nat Genet 41: 882-4 (2009)
PM ID: 19561607 PMC2763485 NIHMS120360
51: Guan S, Fan J, Han A, Chen M, Woodley DT, Li W
Non-compensating roles between Nckalpha and Nckbeta in PDGF-BB signaling to promote human dermal fibroblast migration.
J Invest Dermatol 129: 1909-20 (2009)
PM ID: 19242519
52: Choi SH, Worswick S, Byun HM, Shear T, Soussa JC, Wolff EM, Douer D, Garcia-Manero G, Liang G, Yang AS
Changes in DNA methylation of tandem DNA repeats are different from interspersed repeats in cancer.
Int J Cancer 125: 723-9 (2009)
PM ID: 19437537 PMC4086885 NIHMS587075
53: Friedman JM, Jones PA
MicroRNAs: critical mediators of differentiation, development and disease.
Swiss Med Wkly 139: 466-72 (2009)
PM ID: 19705306 PMC2854010 NIHMS185177
54: Friedman JM, Jones PA, Liang G
The tumor suppressor microRNA-101 becomes an epigenetic player by targeting the polycomb group protein EZH2 in cancer.
Cell Cycle 8: 2313-4 (2009)
PM ID: 19625769 PMC2846299 NIHMS185710
55: Jia L, Landan G, Pomerantz M, Jaschek R, Herman P, Reich D, Yan C, Khalid O, Kantoff P, Oh W, Manak JR, Berman BP, Henderson BE, Frenkel B, Haiman CA, Freedman M, Tanay A, Coetzee GA
Functional enhancers at the gene-poor 8q24 cancer-linked locus.
PLoS Genet 5: e1000597 (2009)
PM ID: 19680443 PMC2717370
56: Peters AA, Buchanan G, Ricciardelli C, Bianco-Miotto T, Centenera MM, Harris JM, Jindal S, Segara D, Jia L, Moore NL, Henshall SM, Birrell SN, Coetzee GA, Sutherland RL, Butler LM, Tilley WD
Androgen receptor inhibits estrogen receptor-alpha activity and is prognostic in breast cancer.
Cancer Res 69: 6131-40 (2009)
PM ID: 19638585
57: Li F, Zeng B, Chai Y, Cai P, Fan C, Cheng T
The linker region of Smad2 mediates TGF-beta-dependent ERK2-induced collagen synthesis.
Biochem Biophys Res Commun 386: 289-93 (2009)
PM ID: 19465000
58: Zhong S, Johnson DL
The JNKs differentially regulate RNA polymerase III transcription by coordinately modulating the expression of all TFIIIB subunits.
Proc Natl Acad Sci U S A 106: 12682-7 (2009)
PM ID: 19620725 PMC2722300
59: Jiang X, Gwye Y, McKeown SJ, Bronner-Fraser M, Lutzko C, Lawlor ER
Isolation and characterization of neural crest stem cells derived from in vitro-differentiated human embryonic stem cells.
Stem Cells Dev 18: 1059-70 (2009)
PM ID: 19099373
60: Wang M, Wey S, Zhang Y, Ye R, Lee AS
Role of the unfolded protein response regulator GRP78/BiP in development, cancer, and neurological disorders.
Antioxid Redox Signal 11: 2307-16 (2009)
PM ID: 19309259 PMC2819800
61: Bouazoune K, Miranda TB, Jones PA, Kingston RE
Analysis of individual remodeled nucleosomes reveals decreased histone-DNA contacts created by hSWI/SNF.
Nucleic Acids Res 37: 5279-94 (2009)
PM ID: 19567737 PMC2760786
62: Spektor TM, Rice JC
Identification and characterization of posttranslational modification-specific binding proteins in vivo by mammalian tethered catalysis.
Proc Natl Acad Sci U S A 106: 14808-13 (2009)
PM ID: 19706462 PMC2736425
63: Dieli-Conwright CM, Spektor TM, Rice JC, Sattler FR, Schroeder ET
Hormone therapy attenuates exercise-induced skeletal muscle damage in postmenopausal women.
J Appl Physiol (1985) 107: 853-8 (2009)
PM ID: 19574506
64: Willis BC, Borok Z
Epithelial-mesenchymal transition: potential role in obliterative bronchiolitis?
Thorax 64: 742-3 (2009)
PM ID: 19717708
65: Lee HR, Kim MH, Lee JS, Liang C, Jung JU
Viral interferon regulatory factors.
J Interferon Cytokine Res 29: 621-7 (2009)
PM ID: 19715458 PMC2956608
66: Gundimeda U, Schiffman JE, Gottlieb SN, Roth BI, Gopalakrishna R
Negation of the cancer-preventive actions of selenium by over-expression of protein kinase Cepsilon and selenoprotein thioredoxin reductase.
Carcinogenesis 30: 1553-61 (2009)
PM ID: 19578042
67: Jeong KW, Lee YH, Stallcup MR
Recruitment of the SWI/SNF chromatin remodeling complex to steroid hormone-regulated promoters by nuclear receptor coactivator flightless-I.
J Biol Chem 284: 29298-309 (2009)
PM ID: 19720835 PMC2785560
68: Jeong S, Liang G, Sharma S, Lin JC, Choi SH, Han H, Yoo CB, Egger G, Yang AS, Jones PA
Selective anchoring of DNA methyltransferases 3A and 3B to nucleosomes containing methylated DNA.
Mol Cell Biol 29: 5366-76 (2009)
PM ID: 19620278 PMC2747980
69: Poynter JN, Haile RW, Siegmund KD, Campbell PT, Figueiredo JC, Limburg P, Young J, Le Marchand L, Potter JD, Cotterchio M, Casey G, Hopper JL, Jenkins MA, Thibodeau SN, Newcomb PA, Baron JA, Colon Cancer Family Registry
Associations between smoking, alcohol consumption, and colorectal cancer, overall and by tumor microsatellite instability status.
Cancer Epidemiol Biomarkers Prev 18: 2745-50 (2009)
PM ID: 19755657 PMC2759847 NIHMS140217
70: Huang X, Bringas P, Slavkin HC, Chai Y
Fate of HERS during tooth root development.
Dev Biol 334: 22-30 (2009)
PM ID: 19576204 PMC2744848 NIHMS139234
71: Lin CM, Jiang TX, Baker RE, Maini PK, Widelitz RB, Chuong CM
Spots and stripes: pleomorphic patterning of stem cells via p-ERK-dependent cell chemotaxis shown by feather morphogenesis and mathematical simulation.
Dev Biol 334: 369-82 (2009)
PM ID: 19647731 PMC2811698 NIHMS145522
72: Choi J, Heo K, An W
Cooperative action of TIP48 and TIP49 in H2A.Z exchange catalyzed by acetylation of nucleosomal H2A.
Nucleic Acids Res 37: 5993-6007 (2009)
PM ID: 19696079 PMC2764430
73: Tiozzo C, De Langhe S, Yu M, Londhe VA, Carraro G, Li M, Li C, Xing Y, Anderson S, Borok Z, Bellusci S, Minoo P
Deletion of Pten expands lung epithelial progenitor pools and confers resistance to airway injury.
Am J Respir Crit Care Med 180: 701-12 (2009)
PM ID: 19574443 PMC2778148
74: E X, Hwang S, Oh S, Lee JS, Jeong JH, Gwack Y, Kowalik TF, Sun R, Jung JU, Liang C
Viral Bcl-2-mediated evasion of autophagy aids chronic infection of gammaherpesvirus 68.
PLoS Pathog 5: e1000609 (2009)
PM ID: 19816569 PMC2752191
75: Jones PA, Liang G
Rethinking how DNA methylation patterns are maintained.
Nat Rev Genet 10: 805-11 (2009)
PM ID: 19789556 PMC2848124 [Available on 11/01/10] NIHMS185221 [Available on 11/01/10]
76: Dieli-Conwright CM, Spektor TM, Rice JC, Sattler FR, Schroeder ET
Influence of hormone replacement therapy on eccentric exercise induced myogenic gene expression in postmenopausal women.
J Appl Physiol (1985) 107: 1381-8 (2009)
PM ID: 19696363 PMC2777804
77: Dieli-Conwright CM, Spektor TM, Rice JC, Todd Schroeder E
Oestradiol and SERM treatments influence oestrogen receptor coregulator gene expression in human skeletal muscle cells.
Acta Physiol (Oxf) 197: 187-96 (2009)
PM ID: 19432593
78: Felton VM, Borok Z, Willis BC
N-acetylcysteine inhibits alveolar epithelial-mesenchymal transition.
Am J Physiol Lung Cell Mol Physiol 297: L805-12 (2009)
PM ID: 19648289 PMC2777496
79: Lee JS, Li Q, Lee JY, Lee SH, Jeong JH, Lee HR, Chang H, Zhou FC, Gao SJ, Liang C, Jung JU
FLIP-mediated autophagy regulation in cell death control.
Nat Cell Biol 11: 1355-62 (2009)
PM ID: 19838173 PMC2802862 NIHMS165792
80: Xu TX, Sotnikova TD, Liang C, Zhang J, Jung JU, Spealman RD, Gainetdinov RR, Yao WD
Hyperdopaminergic tone erodes prefrontal long-term potential via a D2 receptor-operated protein phosphatase gate.
J Neurosci 29: 14086-99 (2009)
PM ID: 19906957 PMC2818669 NIHMS163955
81: Stiles BL
PI-3-K and AKT: Onto the mitochondria.
Adv Drug Deliv Rev 61: 1276-82 (2009)
PM ID: 19720099
82: Hu K, Lee C, Qiu D, Fotovati A, Davies A, Abu-Ali S, Wai D, Lawlor ER, Triche TJ, Pallen CJ, Dunn SE
Small interfering RNA library screen of human kinases and phosphatases identifies polo-like kinase 1 as a promising new target for the treatment of pediatric rhabdomyosarcomas.
Mol Cancer Ther 8: 3024-35 (2009)
PM ID: 19887553 PMC2783569 NIHMS150149
83: Lee AS
The Par-4-GRP78 TRAIL, more twists and turns.
Cancer Biol Ther 8: 2103-5 (2009)
PM ID: 19823030 PMC2849277 NIHMS188340
84: Byun HM, Siegmund KD, Pan F, Weisenberger DJ, Kanel G, Laird PW, Yang AS
Epigenetic profiling of somatic tissues from human autopsy specimens identifies tissue- and individual-specific DNA methylation patterns.
Hum Mol Genet 18: 4808-17 (2009)
PM ID: 19776032
85: Kazarian M, Calbo J, Proost N, Carpenter CL, Berns A, Laird-Offringa IA
Immune response in lung cancer mouse model mimics human anti-Hu reactivity.
J Neuroimmunol 217: 38-45 (2009)
PM ID: 19765830 PMC2788043 NIHMS144833
86: Borok Z, Crandall ED
More life for a "terminal" cell.
Am J Physiol Lung Cell Mol Physiol 297: L1042-4 (2009)
PM ID: 19837848 PMC2793181
87: Wei Z, Yang Y, Zhang P, Andrianakos R, Hasegawa K, Lyu J, Chen X, Bai G, Liu C, Pera M, Lu W
Klf4 interacts directly with Oct4 and Sox2 to promote reprogramming.
Stem Cells 27: 2969-78 (2009)
PM ID: 19816951
88: Ricca TI, Liang G, Suenaga AP, Han SW, Jones PA, Jasiulionis MG
Tissue inhibitor of metalloproteinase 1 expression associated with gene demethylation confers anoikis resistance in early phases of melanocyte malignant transformation.
Transl Oncol 2: 329-40 (2009)
PM ID: 19956395 PMC2781071
89: Mao C, Wang M, Luo B, Wey S, Dong D, Wesselschmidt R, Rawlings S, Lee AS
Targeted mutation of the mouse Grp94 gene disrupts development and perturbs endoplasmic reticulum stress signaling.
PLoS One 5: e10852 (2010)
PM ID: 20520781 PMC2877114
90: Jiang X, Gwye Y, Russell D, Cao C, Douglas D, Hung L, Kovar H, Triche TJ, Lawlor ER
CD133 expression in chemo-resistant Ewing sarcoma cells.
BMC Cancer 10: 116 (2010)
PM ID: 20346143 PMC2851692
91: Qiu X, Hother C, Ralfkiær UM, Søgaard A, Lu Q, Workman CT, Liang G, Jones PA, Grønbaek K
Equitoxic doses of 5-azacytidine and 5-aza-2'deoxycytidine induce diverse immediate and overlapping heritable changes in the transcriptome.
PLoS One 5: (2010)
PM ID: 20927380 PMC2947512
92: Hong YJ, Marjoram P, Shibata D, Siegmund KD
Using DNA methylation patterns to infer tumor ancestry.
PLoS One 5: e12002 (2010)
PM ID: 20711251 PMC2918495
93: Baniwal SK, Khalid O, Gabet Y, Shah RR, Purcell DJ, Mav D, Kohn-Gabet AE, Shi Y, Coetzee GA, Frenkel B
Runx2 transcriptome of prostate cancer cells: insights into invasiveness and bone metastasis.
Mol Cancer 9: 258 (2010)
PM ID: 20863401 PMC2955618
94: Watkins PA, Moser AB, Toomer CB, Steinberg SJ, Moser HW, Karaman MW, Ramaswamy K, Siegmund KD, Lee DR, Ely JJ, Ryder OA, Hacia JG
Identification of differences in human and great ape phytanic acid metabolism that could influence gene expression profiles and physiological functions.
BMC Physiol 10: 19 (2010)
PM ID: 20932325 PMC2964658
95: Zeng N, Bayan JA, He L, Stiles B
The Role of PTEN in β-Cell Growth.
Open Endocrinol J 4: 23-32 (2010)
PM ID: 23853672 PMC3708799 NIHMS419651
96: Ye R, Jung DY, Jun JY, Li J, Luo S, Ko HJ, Kim JK, Lee AS
Grp78 heterozygosity promotes adaptive unfolded protein response and attenuates diet-induced obesity and insulin resistance.
Diabetes 59: 6-16 (2010)
PM ID: 19808896 PMC2797945
97: Sharma S, Kelly TK, Jones PA
Epigenetics in cancer.
Carcinogenesis 31: 27-36 (2010)
PM ID: 19752007 PMC2802667
98: Zhong JF, Weiner L, Jin Y, Lu W, Taylor CR
A real-time pluripotency reporter for human stem cells.
Stem Cells Dev 19: 47-52 (2010)
PM ID: 19473101
99: Miranda TB, Kelly TK, Bouazoune K, Jones PA
Methylation-sensitive single-molecule analysis of chromatin structure.
Curr Protoc Mol Biol Chapter 21: Unit 21.17.1-16 (2010)
PM ID: 20069538
100: Coetzee GA, Jia L, Frenkel B, Henderson BE, Tanay A, Haiman CA, Freedman ML
A systematic approach to understand the functional consequences of non-protein coding risk regions.
Cell Cycle 9: 256-9 (2010)
PM ID: 20023379 PMC3319348 NIHMS231263
101: Hong H, Yen HY, Brockmeyer A, Liu Y, Chodankar R, Pike MC, Stanczyk FZ, Maxson R, Dubeau L
Changes in the mouse estrus cycle in response to BRCA1 inactivation suggest a potential link between risk factors for familial and sporadic ovarian cancer.
Cancer Res 70: 221-8 (2010)
PM ID: 20028858 PMC2805040 NIHMS157376
102: Oh S, E X, Hwang S, Liang C
Autophagy evasion in herpesviral latency.
Autophagy 6: 151-2 (2010)
PM ID: 19923915 PMC2847627 NIHMS188706
103: Song HR, Gonzalez-Gomez I, Suh GS, Commins DL, Sposto R, Gilles FH, Deneen B, Erdreich-Epstein A
Nuclear factor IA is expressed in astrocytomas and is associated with improved survival.
Neuro Oncol 12: 122-32 (2010)
PM ID: 20150379 PMC2940580
104: Iwata J, Hosokawa R, Sanchez-Lara PA, Urata M, Slavkin H, Chai Y
Transforming growth factor-beta regulates basal transcriptional regulatory machinery to control cell proliferation and differentiation in cranial neural crest-derived osteoprogenitor cells.
J Biol Chem 285: 4975-82 (2010)
PM ID: 19959467 PMC2836101
105: Wang M, Ye R, Barron E, Baumeister P, Mao C, Luo S, Fu Y, Luo B, Dubeau L, Hinton DR, Lee AS
Essential role of the unfolded protein response regulator GRP78/BiP in protection from neuronal apoptosis.
Cell Death Differ 17: 488-98 (2010)
PM ID: 19816510 PMC2822118 NIHMS143864
106: Wang XM, Greiner TC, Bibikova M, Pike BL, Siegmund KD, Sinha UK, Müschen M, Jaeger EB, Weisenburger DD, Chan WC, Shibata D, Fan JB, Hacia JG
Identification and functional relevance of de novo DNA methylation in cancerous B-cell populations.
J Cell Biochem 109: 818-27 (2010)
PM ID: 20069569 PMC3122883 NIHMS305118
107: Sir D, Tian Y, Chen WL, Ann DK, Yen TS, Ou JH
The early autophagic pathway is activated by hepatitis B virus and required for viral DNA replication.
Proc Natl Acad Sci U S A 107: 4383-8 (2010)
PM ID: 20142477 PMC2840127
108: Zhang P, Andrianakos R, Yang Y, Liu C, Lu W
Kruppel-like factor 4 (Klf4) prevents embryonic stem (ES) cell differentiation by regulating Nanog gene expression.
J Biol Chem 285: 9180-9 (2010)
PM ID: 20071344 PMC2838337
109: Xing Y, Li C, Li A, Sridurongrit S, Tiozzo C, Bellusci S, Borok Z, Kaartinen V, Minoo P
Signaling via Alk5 controls the ontogeny of lung Clara cells.
Development 137: 825-33 (2010)
PM ID: 20147383 PMC2827691
110: Gu J, Li S, Zhang X, Wang LC, Niewolik D, Schwarz K, Legerski RJ, Zandi E, Lieber MR
DNA-PKcs regulates a single-stranded DNA endonuclease activity of Artemis.
DNA Repair (Amst) 9: 429-37 (2010)
PM ID: 20117966 PMC2847011 NIHMS171326
111: Xu J, Millard M, Ren X, Cox OT, Erdreich-Epstein A
c-Abl mediates endothelial apoptosis induced by inhibition of integrins alphavbeta3 and alphavbeta5 and by disruption of actin.
Blood 115: 2709-18 (2010)
PM ID: 20124512 PMC2852370
112: Liang C, Jung JU
Autophagy genes as tumor suppressors.
Curr Opin Cell Biol 22: 226-33 (2010)
PM ID: 19945837 PMC2854193 NIHMS159173
113: Lu L, Wang J, Zhang F, Chai Y, Brand D, Wang X, Horwitz DA, Shi W, Zheng SG
Role of SMAD and non-SMAD signals in the development of Th17 and regulatory T cells.
J Immunol 184: 4295-306 (2010)
PM ID: 20304828 PMC3087811 NIHMS286343
114: Wolff EM, Byun HM, Han HF, Sharma S, Nichols PW, Siegmund KD, Yang AS, Jones PA, Liang G
Hypomethylation of a LINE-1 promoter activates an alternate transcript of the MET oncogene in bladders with cancer.
PLoS Genet 6: e1000917 (2010)
PM ID: 20421991 PMC2858672
115: van Doorninck JA, Ji L, Schaub B, Shimada H, Wing MR, Krailo MD, Lessnick SL, Marina N, Triche TJ, Sposto R, Womer RB, Lawlor ER
Current treatment protocols have eliminated the prognostic advantage of type 1 fusions in Ewing sarcoma: a report from the Children's Oncology Group.
J Clin Oncol 28: 1989-94 (2010)
PM ID: 20308669 PMC2860404
116: Teschendorff AE, Menon U, Gentry-Maharaj A, Ramus SJ, Weisenberger DJ, Shen H, Campan M, Noushmehr H, Bell CG, Maxwell AP, Savage DA, Mueller-Holzner E, Marth C, Kocjan G, Gayther SA, Jones A, Beck S, Wagner W, Laird PW, Jacobs IJ, Widschwendter M
Age-dependent DNA methylation of genes that are suppressed in stem cells is a hallmark of cancer.
Genome Res 20: 440-6 (2010)
PM ID: 20219944 PMC2847747
117: Wu S, Rice JC
A histone methylation code for SV40 minichromosomes.
Cell Cycle 9: 1235-6 (2010)
PM ID: 20404522 PMC3747954 NIHMS494791
118: Yacobi NR, Malmstadt N, Fazlollahi F, Demaio L, Marchelletta R, Hamm-Alvarez SF, Borok Z, Kim KJ, Crandall ED
Mechanisms of alveolar epithelial translocation of a defined population of nanoparticles.
Am J Respir Cell Mol Biol 42: 604-14 (2010)
PM ID: 19574531 PMC2874446
119: Vázquez-Chantada M, Fernández-Ramos D, Embade N, Martínez-Lopez N, Varela-Rey M, Woodhoo A, Luka Z, Wagner C, Anglim PP, Finnell RH, Caballería J, Laird-Offringa IA, Gorospe M, Lu SC, Mato JM, Martínez-Chantar ML
HuR/methyl-HuR and AUF1 regulate the MAT expressed during liver proliferation, differentiation, and carcinogenesis.
Gastroenterology 138: 1943-53 (2010)
PM ID: 20102719 PMC2860011 NIHMS172783
120: Huang X, Xu X, Bringas P, Hung YP, Chai Y
Smad4-Shh-Nfic signaling cascade-mediated epithelial-mesenchymal interaction is crucial in regulating tooth root development.
J Bone Miner Res 25: 1167-78 (2010)
PM ID: 19888897 PMC3153373
121: Zhang Y, Liu R, Ni M, Gill P, Lee AS
Cell surface relocalization of the endoplasmic reticulum chaperone and unfolded protein response regulator GRP78/BiP.
J Biol Chem 285: 15065-75 (2010)
PM ID: 20208072 PMC2865300
122: Chuang JC, Warner SL, Vollmer D, Vankayalapati H, Redkar S, Bearss DJ, Qiu X, Yoo CB, Jones PA
S110, a 5-Aza-2'-deoxycytidine-containing dinucleotide, is an effective DNA methylation inhibitor in vivo and can reduce tumor growth.
Mol Cancer Ther 9: 1443-50 (2010)
PM ID: 20442312 PMC2868087 NIHMS188847
123: Sir D, Ann DK, Ou JH
Autophagy by hepatitis B virus and for hepatitis B virus.
Autophagy 6: 548-9 (2010)
PM ID: 20305390
124: Noushmehr H, Weisenberger DJ, Diefes K, Phillips HS, Pujara K, Berman BP, Pan F, Pelloski CE, Sulman EP, Bhat KP, Verhaak RG, Hoadley KA, Hayes DN, Perou CM, Schmidt HK, Ding L, Wilson RK, Van Den Berg D, Shen H, Bengtsson H, Neuvial P, Cope LM, Buckley J, Herman JG, Baylin SB, Laird PW, Aldape K, Cancer Genome Atlas Research Network
Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma.
Cancer Cell 17: 510-22 (2010)
PM ID: 20399149 PMC2872684 NIHMS198493
125: Ahmadiyeh N, Pomerantz MM, Grisanzio C, Herman P, Jia L, Almendro V, He HH, Brown M, Liu XS, Davis M, Caswell JL, Beckwith CA, Hills A, Macconaill L, Coetzee GA, Regan MM, Freedman ML
8q24 prostate, breast, and colon cancer risk loci show tissue-specific long-range interaction with MYC.
Proc Natl Acad Sci U S A 107: 9742-6 (2010)
PM ID: 20453196 PMC2906844
126: He L, Hou X, Kanel G, Zeng N, Galicia V, Wang Y, Yang J, Wu H, Birnbaum MJ, Stiles BL
The critical role of AKT2 in hepatic steatosis induced by PTEN loss.
Am J Pathol 176: 2302-8 (2010)
PM ID: 20348245 PMC2861095
127: Xiong G, Husseiny MI, Song L, Erdreich-Epstein A, Shackleford GM, Seeger RC, Jäckel D, Hensel M, Metelitsa LS
Novel cancer vaccine based on genes of Salmonella pathogenicity island 2.
Int J Cancer 126: 2622-34 (2010)
PM ID: 19824039 PMC2993175 NIHMS218512
128: Wu AH, Siegmund KD, Long TI, Cozen W, Wan P, Tseng CC, Shibata D, Laird PW
Hormone therapy, DNA methylation and colon cancer.
Carcinogenesis 31: 1060-7 (2010)
PM ID: 20064828 PMC2878358
129: Obianyo O, Causey CP, Osborne TC, Jones JE, Lee YH, Stallcup MR, Thompson PR
A chloroacetamidine-based inactivator of protein arginine methyltransferase 1: design, synthesis, and in vitro and in vivo evaluation.
Chembiochem 11: 1219-23 (2010)
PM ID: 20480486 PMC3060404 NIHMS278479
130: Liu M, Spellberg B, Phan QT, Fu Y, Fu Y, Lee AS, Edwards JE, Filler SG, Ibrahim AS
The endothelial cell receptor GRP78 is required for mucormycosis pathogenesis in diabetic mice.
J Clin Invest 120: 1914-24 (2010)
PM ID: 20484814 PMC2877958
131: Berman BP, Frenkel B, Coetzee GA, Jia L
Androgen receptor responsive enhancers are flanked by consistently-positioned H3-acetylated nucleosomes.
Cell Cycle 9: 2249-50 (2010)
PM ID: 20495358
132: Xia M, Chen Y, Wang LC, Zandi E, Yang H, Bemanian S, Martínez-Chantar ML, Mato JM, Lu SC
Novel function and intracellular localization of methionine adenosyltransferase 2beta splicing variants.
J Biol Chem 285: 20015-21 (2010)
PM ID: 20421296 PMC2888413
133: Roybal PG, Wu NL, Sun J, Ting MC, Schafer CA, Maxson RE
Inactivation of Msx1 and Msx2 in neural crest reveals an unexpected role in suppressing heterotopic bone formation in the head.
Dev Biol 343: 28-39 (2010)
PM ID: 20398647 PMC3279331 NIHMS205405
134: Limsui D, Vierkant RA, Tillmans LS, Wang AH, Weisenberger DJ, Laird PW, Lynch CF, Anderson KE, French AJ, Haile RW, Harnack LJ, Potter JD, Slager SL, Smyrk TC, Thibodeau SN, Cerhan JR, Limburg PJ
Cigarette smoking and colorectal cancer risk by molecularly defined subtypes.
J Natl Cancer Inst 102: 1012-22 (2010)
PM ID: 20587792 PMC2915616
135: Flodby P, Borok Z, Banfalvi A, Zhou B, Gao D, Minoo P, Ann DK, Morrisey EE, Crandall ED
Directed expression of Cre in alveolar epithelial type 1 cells.
Am J Respir Cell Mol Biol 43: 173-8 (2010)
PM ID: 19767448 PMC2937230
136: Li A, Xing Y, Chan B, Heisterkamp N, Groffen J, Borok Z, Minoo P, Li C
Cell type-specific expression of adenomatous polyposis coli in lung development, injury, and repair.
Dev Dyn 239: 2288-97 (2010)
PM ID: 20658693 PMC2911649 NIHMS215274
137: Frenkel B, Hong A, Baniwal SK, Coetzee GA, Ohlsson C, Khalid O, Gabet Y
Regulation of adult bone turnover by sex steroids.
J Cell Physiol 224: 305-10 (2010)
PM ID: 20432458
138: Henderson WR, Chi EY, Ye X, Nguyen C, Tien YT, Zhou B, Borok Z, Knight DA, Kahn M
Inhibition of Wnt/beta-catenin/CREB binding protein (CBP) signaling reverses pulmonary fibrosis.
Proc Natl Acad Sci U S A 107: 14309-14 (2010)
PM ID: 20660310 PMC2922550
139: Ding W, You H, Dang H, Leblanc F, Galicia V, Lu SC, Stiles B, Rountree CB
Epithelial-to-mesenchymal transition of murine liver tumor cells promotes invasion.
Hepatology 52: 945-53 (2010)
PM ID: 20564331 PMC3032356 NIHMS265719
140: Kelly TK, Miranda TB, Liang G, Berman BP, Lin JC, Tanay A, Jones PA
H2A.Z maintenance during mitosis reveals nucleosome shifting on mitotically silenced genes.
Mol Cell 39: 901-11 (2010)
PM ID: 20864037 PMC2947862 NIHMS232219
141: Lucio-Eterovic AK, Singh MM, Gardner JE, Veerappan CS, Rice JC, Carpenter PB
Role for the nuclear receptor-binding SET domain protein 1 (NSD1) methyltransferase in coordinating lysine 36 methylation at histone 3 with RNA polymerase II function.
Proc Natl Acad Sci U S A 107: 16952-7 (2010)
PM ID: 20837538 PMC2947892
142: Teo JL, Kahn M
The Wnt signaling pathway in cellular proliferation and differentiation: A tale of two coactivators.
Adv Drug Deliv Rev 62: 1149-55 (2010)
PM ID: 20920541
143: Kelly TK, De Carvalho DD, Jones PA
Epigenetic modifications as therapeutic targets.
Nat Biotechnol 28: 1069-1078 (2010)
PM ID: 20944599 PMC3022972 NIHMS228695
144: Wolff EM, Chihara Y, Pan F, Weisenberger DJ, Siegmund KD, Sugano K, Kawashima K, Laird PW, Jones PA, Liang G
Unique DNA methylation patterns distinguish noninvasive and invasive urothelial cancers and establish an epigenetic field defect in premalignant tissue.
Cancer Res 70: 8169-78 (2010)
PM ID: 20841482 PMC2955801 NIHMS234690
145: De Carvalho DD, You JS, Jones PA
DNA methylation and cellular reprogramming.
Trends Cell Biol 20: 609-17 (2010)
PM ID: 20810283 PMC2981432 NIHMS245472
146: Chung TL, Brena RM, Kolle G, Grimmond SM, Berman BP, Laird PW, Pera MF, Wolvetang EJ
Vitamin C promotes widespread yet specific DNA demethylation of the epigenome in human embryonic stem cells.
Stem Cells 28: 1848-55 (2010)
PM ID: 20687155
147: Zhang QZ, Su WR, Shi SH, Wilder-Smith P, Xiang AP, Wong A, Nguyen AL, Kwon CW, Le AD
Human gingiva-derived mesenchymal stem cells elicit polarization of m2 macrophages and enhance cutaneous wound healing.
Stem Cells 28: 1856-68 (2010)
PM ID: 20734355 PMC3114043 NIHMS290839
148: Yen HY, Ting MC, Maxson RE
Jagged1 functions downstream of Twist1 in the specification of the coronal suture and the formation of a boundary between osteogenic and non-osteogenic cells.
Dev Biol 347: 258-70 (2010)
PM ID: 20727876 PMC3210079 NIHMS240175
149: Yang X, Lay F, Han H, Jones PA
Targeting DNA methylation for epigenetic therapy.
Trends Pharmacol Sci 31: 536-46 (2010)
PM ID: 20846732 PMC2967479 NIHMS237981
150: Jiang X, Castelao JE, Yuan JM, Groshen S, Stern MC, Conti DV, Cortessis VK, Coetzee GA, Pike MC, Gago-Dominguez M
Hypertension, diuretics and antihypertensives in relation to bladder cancer.
Carcinogenesis 31: 1964-71 (2010)
PM ID: 20732908 PMC2966553
151: Lau HD, Yaegashi J, Zaro BW, Pratt MR
Precise control of protein concentration in living cells.
Angew Chem Int Ed Engl 49: 8458-61 (2010)
PM ID: 20878685
152: Kim YH, Fazlollahi F, Kennedy IM, Yacobi NR, Hamm-Alvarez SF, Borok Z, Kim KJ, Crandall ED
Alveolar epithelial cell injury due to zinc oxide nanoparticle exposure.
Am J Respir Crit Care Med 182: 1398-409 (2010)
PM ID: 20639441 PMC3029930
153: Ye R, Mareninova OA, Barron E, Wang M, Hinton DR, Pandol SJ, Lee AS
Grp78 heterozygosity regulates chaperone balance in exocrine pancreas with differential response to cerulein-induced acute pancreatitis.
Am J Pathol 177: 2827-36 (2010)
PM ID: 20971738 PMC2993313
154: Gundimeda U, McNeill TH, Schiffman JE, Hinton DR, Gopalakrishna R
Green tea polyphenols potentiate the action of nerve growth factor to induce neuritogenesis: possible role of reactive oxygen species.
J Neurosci Res 88: 3644-55 (2010)
PM ID: 20936703 PMC2965808 NIHMS232888
155: Brevik A, Joshi AD, Corral R, Onland-Moret NC, Siegmund KD, Le Marchand L, Baron JA, Martinez ME, Haile RW, Ahnen DJ, Sandler RS, Lance P, Stern MC
Polymorphisms in base excision repair genes as colorectal cancer risk factors and modifiers of the effect of diets high in red meat.
Cancer Epidemiol Biomarkers Prev 19: 3167-73 (2010)
PM ID: 21037106 PMC3058341 NIHMS249481
156: Ko KS, Tomasi ML, Iglesias-Ara A, French BA, French SW, Ramani K, Lozano JJ, Oh P, He L, Stiles BL, Li TW, Yang H, Martínez-Chantar ML, Mato JM, Lu SC
Liver-specific deletion of prohibitin 1 results in spontaneous liver injury, fibrosis, and hepatocellular carcinoma in mice.
Hepatology 52: 2096-108 (2010)
PM ID: 20890892 PMC3005187 NIHMS228312
157: Galicia VA, He L, Dang H, Kanel G, Vendryes C, French BA, Zeng N, Bayan JA, Ding W, Wang KS, French S, Birnbaum MJ, Rountree CB, Stiles BL
Expansion of hepatic tumor progenitor cells in Pten-null mice requires liver injury and is reversed by loss of AKT2.
Gastroenterology 139: 2170-82 (2010)
PM ID: 20837017 PMC2997180 NIHMS235881
158: Hunninghake GM, Soto-Quirós ME, Avila L, Kim HP, Lasky-Su J, Rafaels N, Ruczinski I, Beaty TH, Mathias RA, Barnes KC, Wilk JB, O'Connor GT, Gauderman WJ, Vora H, Baurley JW, Gilliland F, Liang C, Sylvia JS, Klanderman BJ, Sharma SS, Himes BE, Bossley CJ, Israel E, Raby BA, Bush A, Choi AM, Weiss ST, Celedón JC
TSLP polymorphisms are associated with asthma in a sex-specific fashion.
Allergy 65: 1566-75 (2010)
PM ID: 20560908 PMC2970693 NIHMS233299
159: Chen WT, Lee AS
Measurement and modification of the expression level of the chaperone protein and signaling regulator GRP78/BiP in mammalian cells.
Methods Enzymol 490: 217-33 (2011)
PM ID: 21266253
160: Sharma S, De Carvalho DD, Jeong S, Jones PA, Liang G
Nucleosomes containing methylated DNA stabilize DNA methyltransferases 3A/3B and ensure faithful epigenetic inheritance.
PLoS Genet 7: e1001286 (2011)
PM ID: 21304883 PMC3033376
161: Taberlay PC, Jones PA
DNA methylation and cancer.
Prog Drug Res 67: 1-23 (2011)
PM ID: 21141722
162: Jeong JH, Bhatia A, Toth Z, Oh S, Inn KS, Liao CP, Roy-Burman P, Melamed J, Coetzee GA, Jung JU
TPL2/COT/MAP3K8 (TPL2) activation promotes androgen depletion-independent (ADI) prostate cancer growth.
PLoS One 6: e16205 (2011)
PM ID: 21267413 PMC3022761
163: Kazarian M, Laird-Offringa IA
Small-cell lung cancer-associated autoantibodies: potential applications to cancer diagnosis, early detection, and therapy.
Mol Cancer 10: 33 (2011)
PM ID: 21450098 PMC3080347
164: Moser AB, Steinberg SJ, Watkins PA, Moser HW, Ramaswamy K, Siegmund KD, Lee DR, Ely JJ, Ryder OA, Hacia JG
Human and great ape red blood cells differ in plasmalogen levels and composition.
Lipids Health Dis 10: 101 (2011)
PM ID: 21679470 PMC3129581
165: Siegmund KD, Marjoram P, Tavaré S, Shibata D
High DNA methylation pattern intratumoral diversity implies weak selection in many human colorectal cancers.
PLoS One 6: e21657 (2011)
PM ID: 21738754 PMC3125304
166: Selamat SA, Galler JS, Joshi AD, Fyfe MN, Campan M, Siegmund KD, Kerr KM, Laird-Offringa IA
DNA methylation changes in atypical adenomatous hyperplasia, adenocarcinoma in situ, and lung adenocarcinoma.
PLoS One 6: e21443 (2011)
PM ID: 21731750 PMC3121768
167: Luo B, Lam BS, Lee SH, Wey S, Zhou H, Wang M, Chen SY, Adams GB, Lee AS
The endoplasmic reticulum chaperone protein GRP94 is required for maintaining hematopoietic stem cell interactions with the adult bone marrow niche.
PLoS One 6: e20364 (2011)
PM ID: 21647226 PMC3101259
168: Frietze S, Farnham PJ
Transcription factor effector domains.
Subcell Biochem 52: 261-77 (2011)
PM ID: 21557087
169: Wang X, Kang GH, Campan M, Weisenberger DJ, Long TI, Cozen W, Bernstein L, Wu AH, Siegmund KD, Shibata D, Laird PW
Epigenetic subgroups of esophageal and gastric adenocarcinoma with differential GATA5 DNA methylation associated with clinical and lifestyle factors.
PLoS One 6: e25985 (2011)
PM ID: 22028801 PMC3197593
170: Rakovski C, Weisenberger DJ, Marjoram P, Laird PW, Siegmund KD
Modeling measurement error in tumor characterization studies.
BMC Bioinformatics 12: 284 (2011)
PM ID: 21752297 PMC3213130
171: Fazlollahi F, Sipos A, Kim YH, Hamm-Alvarez SF, Borok Z, Kim KJ, Crandall ED
Translocation of PEGylated quantum dots across rat alveolar epithelial cell monolayers.
Int J Nanomedicine 6: 2849-57 (2011)
PM ID: 22131830 PMC3224711
172: Campan M, Moffitt M, Houshdaran S, Shen H, Widschwendter M, Daxenbichler G, Long T, Marth C, Laird-Offringa IA, Press MF, Dubeau L, Siegmund KD, Wu AH, Groshen S, Chandavarkar U, Roman LD, Berchuck A, Pearce CL, Laird PW
Genome-scale screen for DNA methylation-based detection markers for ovarian cancer.
PLoS One 6: e28141 (2011)
PM ID: 22163280 PMC3233546
173: Chimge NO, Baniwal SK, Little GH, Chen YB, Kahn M, Tripathy D, Borok Z, Frenkel B
Regulation of breast cancer metastasis by Runx2 and estrogen signaling: the role of SNAI2.
Breast Cancer Res 13: R127 (2011)
PM ID: 22151997 PMC3326569
174: Pirooz SD, Lee JH, Zhao Z, Ni D, Oh S, Liang C
Measurement of γHV68 infection in mice.
J Vis Exp : (2011)
PM ID: 22127138 PMC3308616
175: Jung CJ, Iyengar S, Blahnik KR, Ajuha TP, Jiang JX, Farnham PJ, Zern M
Epigenetic modulation of miR-122 facilitates human embryonic stem cell self-renewal and hepatocellular carcinoma proliferation.
PLoS One 6: e27740 (2011)
PM ID: 22140464 PMC3225380
176: Chaitanya GV, Cromer WE, Wells SR, Jennings MH, Couraud PO, Romero IA, Weksler B, Erdreich-Epstein A, Mathis JM, Minagar A, Alexander JS
Gliovascular and cytokine interactions modulate brain endothelial barrier in vitro.
J Neuroinflammation 8: 162 (2011)
PM ID: 22112345 PMC3248576
177: Blahnik KR, Dou L, Echipare L, Iyengar S, O'Geen H, Sanchez E, Zhao Y, Marra MA, Hirst M, Costello JF, Korf I, Farnham PJ
Characterization of the contradictory chromatin signatures at the 3' exons of zinc finger genes.
PLoS One 6: e17121 (2011)
PM ID: 21347206 PMC3039671
178: O'Geen H, Echipare L, Farnham PJ
Using ChIP-seq technology to generate high-resolution profiles of histone modifications.
Methods Mol Biol 791: 265-86 (2011)
PM ID: 21913086
179: Cooper A, van Doorninck J, Ji L, Russell D, Ladanyi M, Shimada H, Krailo M, Womer RB, Hsu JH, Thomas D, Triche TJ, Sposto R, Lawlor ER
Ewing tumors that do not overexpress BMI-1 are a distinct molecular subclass with variant biology: a report from the Children's Oncology Group.
Clin Cancer Res 17: 56-66 (2011)
PM ID: 21047978 PMC3711406 NIHMS246539
180: Zhang W, Winder T, Ning Y, Pohl A, Yang D, Kahn M, Lurje G, Labonte MJ, Wilson PM, Gordon MA, Hu-Lieskovan S, Mauro DJ, Langer C, Rowinsky EK, Lenz HJ
A let-7 microRNA-binding site polymorphism in 3'-untranslated region of KRAS gene predicts response in wild-type KRAS patients with metastatic colorectal cancer treated with cetuximab monotherapy.
Ann Oncol 22: 104-9 (2011)
PM ID: 20603437
181: Zhong S, Machida K, Tsukamoto H, Johnson DL
Alcohol induces RNA polymerase III-dependent transcription through c-Jun by co-regulating TATA-binding protein (TBP) and Brf1 expression.
J Biol Chem 286: 2393-401 (2011)
PM ID: 21106530 PMC3024733
182: Bandyopadhyay B, Han A, Dai J, Fan J, Li Y, Chen M, Woodley DT, Li W
TbetaRI/Alk5-independent TbetaRII signaling to ERK1/2 in human skin cells according to distinct levels of TbetaRII expression.
J Cell Sci 124: 19-24 (2011)
PM ID: 21172820 PMC3001406
183: Kastrinos F, Steyerberg EW, Mercado R, Balmaña J, Holter S, Gallinger S, Siegmund KD, Church JM, Jenkins MA, Lindor NM, Thibodeau SN, Burbidge LA, Wenstrup RJ, Syngal S
The PREMM(1,2,6) model predicts risk of MLH1, MSH2, and MSH6 germline mutations based on cancer history.
Gastroenterology 140: 73-81 (2011)
PM ID: 20727894 PMC3125673 NIHMS230894
184: Aelion J, Afif N, Ahmadi F, Aires F, Alanis E, Alonso CS, Alten RH, Alvaro-Gracia JM, Ashrafzadeh A, Ballina J, Bambara LM, Bao C, Bell M, Berney S, Bessette L, Birbara C, Boling E, Bourgeois P, Braun J, Briones H, Brzezicki J, Burgos-Vargos R, Burmester G, Burnett M, Busch H, Cabello E, Calvo A, Cantagrel A, Cantini F, Zea AC, Carreño Perez L, Chavez J, Shim SC, Chindalore V, Chiriac R, Codding C, Danda D, Del Guidice J, De Vita S, Digiovanni R, Dikranian A, Eider W, Fantini F, Ferraccioli G, Fietchner J, Filipowicz-Sosnowska A, Finnanger B, Fiocco G, Fleck M, Fleischmann R, Fraser A, Gaudin P, Gauler G, Gaylis N, Gerlag DM, Godde J, Gomez Reino JJ, Gornisiewicz M, Gough W, Greenwald M, Guerra G, Hackshaw K, Haentzschel HM, Hammond T, Hazleman BL, Heilig B, Herenius MM, Hilliquin P, Holt D, Huang F, Huff J, Huizinga T, Isaacs J, Jaffer A, Amante EJ, Jeka S, Jimenez R, Jones G, Jones R, Kaine J, Kashif A, Kaufmann C, Kay J, Khraishi M, Kivitz A, Klinkhoff A, Kraag G, Krystufkova O, Kucharz E, Lawson J, Leirisalo-Repo M, Levin R, Liang G, Liang P, Limonta M, Lowenstein M, Rodriguez-Lozano C, Lue C, Mahowald M, Maradiaga M, Maricic M, Mariette X, Martin L, Massarotti E, Matucci Cerinic M, Montecucco CM, Mazurov V, McNally J, Mehta D, Meyer O, Misra R, Moreland LW, Mueller Ladner U, Myerson G, Nasonov E, Navarra S, Navarro F, Neal N, Olech E, Olsen N, Pablos JL, Pacheco C, Pal S, Palomo ER, Pandith V, Penserga EG, Prupas H, Radominski S, Ramos-Remus C, Reid D, Riordan K, Rosenberg D, Ruiz A, Saadeh C, Salvarani C, Samuels A, Sanmarti R, Sarzi Puttini P, Saxe P, Schechtman J, Scoville C, Sedlackova M, Sedrish M, Sejer Hansen M, Sibilia J, Siebert S, Specker C, Stern S, Szechinski J, Tahir H, Taylor A, Thompson PW, Tony HP, Tornero J, Trapp R, Tremblay JL, Valesini G, Van Den Bosch F, Wanchu A, Wassenberg S, Ximenes AC, Kim HY, Zanetakis E, Zazueta B, Zerbini C, Tak PP, Rigby WF, Rubbert-Roth A, Peterfy CG, van Vollenhoven RF, Stohl W, Hessey E, Chen A, Tyrrell H, Shaw TM, IMAGE Investigators
Inhibition of joint damage and improved clinical outcomes with rituximab plus methotrexate in early active rheumatoid arthritis: the IMAGE trial.
Ann Rheum Dis 70: 39-46 (2011)
PM ID: 20937671
185: Rumilla K, Schowalter KV, Lindor NM, Thomas BC, Mensink KA, Gallinger S, Holter S, Newcomb PA, Potter JD, Jenkins MA, Hopper JL, Long TI, Weisenberger DJ, Haile RW, Casey G, Laird PW, Le Marchand L, Thibodeau SN
Frequency of deletions of EPCAM (TACSTD1) in MSH2-associated Lynch syndrome cases.
J Mol Diagn 13: 93-9 (2011)
PM ID: 21227399 PMC3069927
186: Lee YH, Bedford MT, Stallcup MR
Regulated recruitment of tumor suppressor BRCA1 to the p21 gene by coactivator methylation.
Genes Dev 25: 176-88 (2011)
PM ID: 21245169 PMC3022263
187: Li M, Krishnaveni MS, Li C, Zhou B, Xing Y, Banfalvi A, Li A, Lombardi V, Akbari O, Borok Z, Minoo P
Epithelium-specific deletion of TGF-β receptor type II protects mice from bleomycin-induced pulmonary fibrosis.
J Clin Invest 121: 277-87 (2011)
PM ID: 21135509 PMC3007138
188: Choi SH, Heo K, Byun HM, An W, Lu W, Yang AS
Identification of preferential target sites for human DNA methyltransferases.
Nucleic Acids Res 39: 104-18 (2011)
PM ID: 20841325 PMC3017615
189: Iqbal S, Tsao-Wei DD, Quinn DI, Gitlitz BJ, Groshen S, Aparicio A, Lenz HJ, El-Khoueiry A, Pinski J, Garcia AA
Phase I clinical trial of pegylated liposomal Doxorubicin and docetaxel in patients with advanced solid tumors.
Am J Clin Oncol 34: 27-31 (2011)
PM ID: 20142723
190: Lee E, Nichols P, Groshen S, Spicer D, Lee AS
GRP78 as potential predictor for breast cancer response to adjuvant taxane therapy.
Int J Cancer 128: 726-31 (2011)
PM ID: 20473863 PMC2972376 NIHMS216547
191: Kelly TK, Jones PA
Role of nucleosomes in mitotic bookmarking.
Cell Cycle 10: 370-1 (2011)
PM ID: 21270523
192: Oh S, Pirooz SD, Ni D, Zhao Z, Liang C
Anti-autophagic Bcl-2: Not just an innocent bystander.
Autophagy 7: 231-2 (2011)
PM ID: 21099349 PMC3679092
193: Ouyang YB, Xu LJ, Emery JF, Lee AS, Giffard RG
Overexpressing GRP78 influences Ca2+ handling and function of mitochondria in astrocytes after ischemia-like stress.
Mitochondrion 11: 279-86 (2011)
PM ID: 21047562 PMC3037025 NIHMS254326
194: Oh S, Xiaofei E, Ni D, Pirooz SD, Lee JY, Lee D, Zhao Z, Lee S, Lee H, Ku B, Kowalik T, Martin SE, Oh BH, Jung JU, Liang C
Downregulation of autophagy by Bcl-2 promotes MCF7 breast cancer cell growth independent of its inhibition of apoptosis.
Cell Death Differ 18: 452-64 (2011)
PM ID: 20885445 PMC3017654 NIHMS229584
195: Ni M, Zhang Y, Lee AS
Beyond the endoplasmic reticulum: atypical GRP78 in cell viability, signalling and therapeutic targeting.
Biochem J 434: 181-8 (2011)
PM ID: 21309747 PMC3353658 NIHMS373948
196: Pfaffenbach KT, Lee AS
The critical role of GRP78 in physiologic and pathologic stress.
Curr Opin Cell Biol 23: 150-6 (2011)
PM ID: 20970977 PMC3043145 NIHMS247888
197: Ku B, Liang C, Jung JU, Oh BH
Evidence that inhibition of BAX activation by BCL-2 involves its tight and preferential interaction with the BH3 domain of BAX.
Cell Res 21: 627-41 (2011)
PM ID: 21060336 PMC3343310
198: Yamada R, Cao X, Butkevich AN, Millard M, Odde S, Mordwinkin N, Gundla R, Zandi E, Louie SG, Petasis NA, Neamati N
Discovery and preclinical evaluation of a novel class of cytotoxic propynoic acid carbamoyl methyl amides (PACMAs).
J Med Chem 54: 2902-14 (2011)
PM ID: 21443194
199: Hughes MW, Wu P, Jiang TX, Lin SJ, Dong CY, Li A, Hsieh FJ, Widelitz RB, Chuong CM
In search of the Golden Fleece: unraveling principles of morphogenesis by studying the integrative biology of skin appendages.
Integr Biol (Camb) 3: 388-407 (2011)
PM ID: 21437328 PMC3620034 NIHMS397283
200: Molognoni F, Cruz AT, Meliso FM, Morais AS, Souza CF, Xander P, Bischof JM, Costa FF, Soares MB, Liang G, Jones PA, Jasiulionis MG
Epigenetic reprogramming as a key contributor to melanocyte malignant transformation.
Epigenetics 6: 450-64 (2011)
PM ID: 21343701 PMC3359486
201: Dong D, Stapleton C, Luo B, Xiong S, Ye W, Zhang Y, Jhaveri N, Zhu G, Ye R, Liu Z, Bruhn KW, Craft N, Groshen S, Hofman FM, Lee AS
A critical role for GRP78/BiP in the tumor microenvironment for neovascularization during tumor growth and metastasis.
Cancer Res 71: 2848-57 (2011)
PM ID: 21467168 PMC3078191 NIHMS276417
202: Myers RM, Stamatoyannopoulos J, Snyder M, Dunham I, Hardison RC, Bernstein BE, Gingeras TR, Kent WJ, Birney E, Wold B, Crawford GE, Bernstein BE, Epstein CB, Shoresh N, Ernst J, Mikkelsen TS, Kheradpour P, Zhang X, Wang L, Issner R, Coyne MJ, Durham T, Ku M, Truong T, Ward LD, Altshuler RC, Lin MF, Kellis M, Gingeras TR, Davis CA, Kapranov P, Dobin A, Zaleski C, Schlesinger F, Batut P, Chakrabortty S, Jha S, Lin W, Drenkow J, Wang H, Bell K, Gao H, Bell I, Dumais E, Dumais J, Antonarakis SE, Ucla C, Borel C, Guigo R, Djebali S, Lagarde J, Kingswood C, Ribeca P, Sammeth M, Alioto T, Merkel A, Tilgner H, Carninci P, Hayashizaki Y, Lassmann T, Takahashi H, Abdelhamid RF, Hannon G, Fejes-Toth K, Preall J, Gordon A, Sotirova V, Reymond A, Howald C, Graison E, Chrast J, Ruan Y, Ruan X, Shahab A, Ting Poh W, Wei CL, Crawford GE, Furey TS, Boyle AP, Sheffield NC, Song L, Shibata Y, Vales T, Winter D, Zhang Z, London D, Wang T, Birney E, Keefe D, Iyer VR, Lee BK, McDaniell RM, Liu Z, Battenhouse A, Bhinge AA, Lieb JD, Grasfeder LL, Showers KA, Giresi PG, Kim SK, Shestak C, Myers RM, Pauli F, Reddy TE, Gertz J, Partridge EC, Jain P, Sprouse RO, Bansal A, Pusey B, Muratet MA, Varley KE, Bowling KM, Newberry KM, Nesmith AS, Dilocker JA, Parker SL, Waite LL, Thibeault K, Roberts K, Absher DM, Wold B, Mortazavi A, Williams B, Marinov G, Trout D, Pepke S, King B, McCue K, Kirilusha A, Desalvo G, Fisher-Aylor K, Amrhein H, Vielmetter J, Sherlock G, Sidow A, Batzoglou S, Rauch R, Kundaje A, Libbrecht M, Margulies EH, Parker SC, Elnitski L, Green ED, Hubbard T, Harrow J, Searle S, Kokocinski F, Aken B, Frankish A, Hunt T, Despacio-Reyes G, Kay M, Mukherjee G, Bignell A, Saunders G, Boychenko V, Van Baren M, Brown RH, Khurana E, Balasubramanian S, Zhang Z, Lam H, Cayting P, Robilotto R, Lu Z, Guigo R, Derrien T, Tanzer A, Knowles DG, Mariotti M, James Kent W, Haussler D, Harte R, Diekhans M, Kellis M, Lin M, Kheradpour P, Ernst J, Reymond A, Howald C, Graison EA, Chrast J, Tress M, Rodriguez JM, Snyder M, Landt SG, Raha D, Shi M, Euskirchen G, Grubert F, Kasowski M, Lian J, Cayting P, Lacroute P, Xu Y, Monahan H, Patacsil D, Slifer T, Yang X, Charos A, Reed B, Wu L, Auerbach RK, Habegger L, Hariharan M, Rozowsky J, Abyzov A, Weissman SM, Gerstein M, Struhl K, Lamarre-Vincent N, Lindahl-Allen M, Miotto B, Moqtaderi Z, Fleming JD, Newburger P, Farnham PJ, Frietze S, O'Geen H, Xu X, Blahnik KR, Cao AR, Iyengar S, Stamatoyannopoulos JA, Kaul R, Thurman RE, Wang H, Navas PA, Sandstrom R, Sabo PJ, Weaver M, Canfield T, Lee K, Neph S, Roach V, Reynolds A, Johnson A, Rynes E, Giste E, Vong S, Neri J, Frum T, Johnson EM, Nguyen ED, Ebersol AK, Sanchez ME, Sheffer HH, Lotakis D, Haugen E, Humbert R, Kutyavin T, Shafer T, Dekker J, Lajoie BR, Sanyal A, James Kent W, Rosenbloom KR, Dreszer TR, Raney BJ, Barber GP, Meyer LR, Sloan CA, Malladi VS, Cline MS, Learned K, Swing VK, Zweig AS, Rhead B, Fujita PA, Roskin K, Karolchik D, Kuhn RM, Haussler D, Birney E, Dunham I, Wilder SP, Keefe D, Sobral D, Herrero J, Beal K, Lukk M, Brazma A, Vaquerizas JM, Luscombe NM, Bickel PJ, Boley N, Brown JB, Li Q, Huang H, Gerstein M, Habegger L, Sboner A, Rozowsky J, Auerbach RK, Yip KY, Cheng C, Yan KK, Bhardwaj N, Wang J, Lochovsky L, Jee J, Gibson T, Leng J, Du J, Hardison RC, Harris RS, Song G, Miller W, Haussler D, Roskin K, Suh B, Wang T, Paten B, Noble WS, Hoffman MM, Buske OJ, Weng Z, Dong X, Wang J, Xi H, Tenenbaum SA, Doyle F, Penalva LO, Chittur S, Tullius TD, Parker SC, White KP, Karmakar S, Victorsen A, Jameel N, Bild N, Grossman RL, Snyder M, Landt SG, Yang X, Patacsil D, Slifer T, Dekker J, Lajoie BR, Sanyal A, Weng Z, Whitfield TW, Wang J, Collins PJ, Trinklein ND, Partridge EC, Myers RM, Giddings MC, Chen X, Khatun J, Maier C, Yu Y, Gunawardena H, Risk B, Feingold EA, Lowdon RF, Dillon LA, Good PJ, Harrow J, Searle S, ENCODE Project Consortium
A user's guide to the encyclopedia of DNA elements (ENCODE).
PLoS Biol 9: e1001046 (2011)
PM ID: 21526222 PMC3079585
203: Cao AR, Rabinovich R, Xu M, Xu X, Jin VX, Farnham PJ
Genome-wide analysis of transcription factor E2F1 mutant proteins reveals that N- and C-terminal protein interaction domains do not participate in targeting E2F1 to the human genome.
J Biol Chem 286: 11985-96 (2011)
PM ID: 21310950 PMC3069401
204: Zhao H, Li S, Han D, Kaartinen V, Chai Y
Alk5-mediated transforming growth factor β signaling acts upstream of fibroblast growth factor 10 to regulate the proliferation and maintenance of dental epithelial stem cells.
Mol Cell Biol 31: 2079-89 (2011)
PM ID: 21402782 PMC3133354
205: Ou CY, LaBonte MJ, Manegold PC, So AY, Ianculescu I, Gerke DS, Yamamoto KR, Ladner RD, Kahn M, Kim JH, Stallcup MR
A coactivator role of CARM1 in the dysregulation of β-catenin activity in colorectal cancer cell growth and gene expression.
Mol Cancer Res 9: 660-70 (2011)
PM ID: 21478268 PMC3096696 NIHMS284281
206: Lee YH, Stallcup MR
Roles of protein arginine methylation in DNA damage signaling pathways is CARM1 a life-or-death decision point?
Cell Cycle 10: 1343-4 (2011)
PM ID: 21445011 PMC3117038
207: Hung Y, Huang X, Chai Y
Molecular regulatory mechanism of root development.
J Calif Dent Assoc 39: 321-4 (2011)
PM ID: 21721476
208: Li J, Huang X, Xu X, Mayo J, Bringas P, Jiang R, Wang S, Chai Y
SMAD4-mediated WNT signaling controls the fate of cranial neural crest cells during tooth morphogenesis.
Development 138: 1977-89 (2011)
PM ID: 21490069 PMC3082303
209: Zaro BW, Yang YY, Hang HC, Pratt MR
Chemical reporters for fluorescent detection and identification of O-GlcNAc-modified proteins reveal glycosylation of the ubiquitin ligase NEDD4-1.
Proc Natl Acad Sci U S A 108: 8146-51 (2011)
PM ID: 21540332 PMC3100932
210: Trojer P, Cao AR, Gao Z, Li Y, Zhang J, Xu X, Li G, Losson R, Erdjument-Bromage H, Tempst P, Farnham PJ, Reinberg D
L3MBTL2 protein acts in concert with PcG protein-mediated monoubiquitination of H2A to establish a repressive chromatin structure.
Mol Cell 42: 438-50 (2011)
PM ID: 21596310 PMC3142354 NIHMS300350
211: Iyengar S, Ivanov AV, Jin VX, Rauscher FJ, Farnham PJ
Functional analysis of KAP1 genomic recruitment.
Mol Cell Biol 31: 1833-47 (2011)
PM ID: 21343339 PMC3133220
212: Kim S, Wang M, Lee AS, Thompson RF
Impaired eyeblink conditioning in 78 kDa-glucose regulated protein (GRP78)/immunoglobulin binding protein (BiP) conditional knockout mice.
Behav Neurosci 125: 404-11 (2011)
PM ID: 21517144
213: Bell D, Berchuck A, Birrer M, Chien J, Cramer D, Dao F, Dhir R, DiSaia P, Gabra H, Glenn P, Godwin A, Gross J, Hartmann L, Huang M, Huntsman D, Iacocca M, Imielinski M, Kalloger S, Karlan B, Levine D, Mills G, Morrison C, Mutch D, Olvera N, Orsulic S, Park K, Petrelli N, Rabeno B, Rader J, Sikic B, Smith-McCune K, Sood A, Bowtell D, Penny R, Testa J, Chang K, Dinh H, Drummond J, Fowler G, Gunaratne P, Hawes A, Kovar C, Lewis L, Morgan M, Newsham I, Santibanez J, Reid J, Trevino L, Wu Y-, Wang M, Muzny D, Wheeler D, Gibbs R, Getz G, Lawrence M, Cibulskis K, Sivachenko A, Sougnez C, Voet D, Wilkinson J, Bloom T, Ardlie K, Fennell T, Baldwin J, Gabriel S, Lander E, Ding LL, Fulton R, Koboldt D, McLellan M, Wylie T, Walker J, O'Laughlin M, Dooling D, Fulton L, Abbott R, Dees N, Zhang Q, Kandoth C, Wendl M, Schierding W, Shen D, Harris C, Schmidt H, Kalicki J, Delehaunty K, Fronick C, Demeter R, Cook L, Wallis J, Lin L, Magrini V, Hodges J, Eldred J, Smith S, Pohl C, Vandin F, Raphael B, Weinstock G, Mardis E, Wilson R, Meyerson M, Winckler W, Getz G, Verhaak R, Carter S, Mermel C, Saksena G, Nguyen H, Onofrio R, Lawrence M, Hubbard D, Gupta S, Crenshaw A, Ramos A, Ardlie K, Chin L, Protopopov A, Zhang J, Kim T, Perna I, Xiao Y, Zhang H, Ren G, Sathiamoorthy N, Park R, Lee E, Park P, Kucherlapati R, Absher M, Waite L, Sherlock G, Brooks J, Li J, Xu J, Myers R, Laird PW, Cope L, Herman J, Shen H, Weisenberger D, Noushmehr H, Pan F, Triche T, Berman B, Van Den Berg D, Buckley J, Baylin S, Spellman P, Purdom E, Neuvial P, Bengtsson H, Jakkula L, Durinck S, Han J, Dorton S, Marr H, Choi Y, Wang V, Wang N, Ngai J, Conboy J, Parvin B, Feiler H, Speed T, Gray J, Levine A, Socci N, Liang Y, Taylor B, Schultz N, Borsu L, Lash A, Brennan C, Viale A, Sander C, Ladanyi M, Hoadley K, Meng S, Du Y, Shi Y, Li L, Turman Y, Zang D, Helms E, Balu S, Zhou X, Wu J, Topal M, Hayes D, Perou C, Getz G, Voet D, Saksena G, Zhang J, Zhang H, Wu C, Shukla S, Cibulskis K, Lawrence M, Sivachenko A, Jing R, Park R, Liu Y, Park P, Noble M, Chin L, Carter H, Kim D, Karchin R, Spellman P, Purdom E, Neuvial P, Bengtsson H, Durinck S, Han J, Korkola J, Heiser L, Cho R, Hu Z, Parvin B, Speed T, Gray J, Schultz N, Cerami E, Taylor B, Olshen A, Reva B, Antipin Y, Shen R, Mankoo P, Sheridan R, Ciriello G, Chang W, Bernanke J, Borsu L, Levine D, Ladanyi M, Sander C, Haussler D, Benz C, Stuart J, Benz S, Sanborn J, Vaske C, Zhu J, Szeto C, Scott G, Yau C, Hoadley K, Du Y, Balu S, Hayes D, Perou C, Wilkerson M, Zhang N, Akbani R, Baggerly K, Yung W, Mills G, Weinstein J, Penny R, Shelton T, Grimm D, Hatfield M, Morris S, Yena P, Rhodes P, Sherman M, Paulauskis J, Millis S, Kahn A, Greene J, Sfeir R, Jensen M, Chen J, Whitmore J, Alonso S, Jordan J, Chu A, Zhang J, Barker A, Compton C, Eley G, Ferguson M, Fielding P, Gerhard D, Myles R, Schaefer C, Mills Shaw K, Vaught J, Vockley J, Good P, Guyer M, Ozenberger B, Peterson J, Thomson E, Cancer Genome Atlas Research Network
Integrated genomic analyses of ovarian carcinoma.
Nature 474: 609-15 (2011)
PM ID: 21720365 PMC3163504 NIHMS313090
214: Freedman ML, Monteiro AN, Gayther SA, Coetzee GA, Risch A, Plass C, Casey G, De Biasi M, Carlson C, Duggan D, James M, Liu P, Tichelaar JW, Vikis HG, You M, Mills IG
Principles for the post-GWAS functional characterization of cancer risk loci.
Nat Genet 43: 513-8 (2011)
PM ID: 21614091 PMC3325768 NIHMS305777
215: Weiss DJ, Bertoncello I, Borok Z, Kim C, Panoskaltsis-Mortari A, Reynolds S, Rojas M, Stripp B, Warburton D, Prockop DJ
Stem cells and cell therapies in lung biology and lung diseases.
Proc Am Thorac Soc 8: 223-72 (2011)
PM ID: 21653527 PMC3132784
216: Jiang TX, Tuan TL, Wu P, Widelitz RB, Chuong CM
From buds to follicles: matrix metalloproteinases in developmental tissue remodeling during feather morphogenesis.
Differentiation 81: 307-14 (2011)
PM ID: 21497985 PMC3114260 NIHMS286448
217: Siegmund KD
Statistical approaches for the analysis of DNA methylation microarray data.
Hum Genet 129: 585-95 (2011)
PM ID: 21519831 PMC3166559 NIHMS317655
218: Borok Z, Whitsett JA, Bitterman PB, Thannickal VJ, Kotton DN, Reynolds SD, Krasnow MA, Bianchi DW, Morrisey EE, Hogan BL, Kurie JM, Walker DC, Radisky DC, Nishimura SL, Violette SM, Noble PW, Shapiro SD, Blaisdell CJ, Chapman HA, Kiley J, Gail D, Hoshizaki D
Cell plasticity in lung injury and repair: report from an NHLBI workshop, April 19-20, 2010.
Proc Am Thorac Soc 8: 215-22 (2011)
PM ID: 21653526 PMC3132783
219: Lyu J, Jho EH, Lu W
Smek promotes histone deacetylation to suppress transcription of Wnt target gene brachyury in pluripotent embryonic stem cells.
Cell Res 21: 911-21 (2011)
PM ID: 21423269 PMC3203701
220: Parekh C, Jubran R, Erdreich-Epstein A, Panigrahy A, Bluml S, Finlay J, Dhall G
Treatment of children with recurrent high grade gliomas with a bevacizumab containing regimen.
J Neurooncol 103: 673-80 (2011)
PM ID: 21038110
221: Zhou H, Zhang Y, Fu Y, Chan L, Lee AS
Novel mechanism of anti-apoptotic function of 78-kDa glucose-regulated protein (GRP78): endocrine resistance factor in breast cancer, through release of B-cell lymphoma 2 (BCL-2) from BCL-2-interacting killer (BIK).
J Biol Chem 286: 25687-96 (2011)
PM ID: 21622563 PMC3138298
222: Breton CV, Byun HM, Wang X, Salam MT, Siegmund K, Gilliland FD
DNA methylation in the arginase-nitric oxide synthase pathway is associated with exhaled nitric oxide in children with asthma.
Am J Respir Crit Care Med 184: 191-7 (2011)
PM ID: 21512169 PMC3172885
223: Iyengar S, Farnham PJ
KAP1 protein: an enigmatic master regulator of the genome.
J Biol Chem 286: 26267-76 (2011)
PM ID: 21652716 PMC3143589
224: Ji C, Kaplowitz N, Lau MY, Kao E, Petrovic LM, Lee AS
Liver-specific loss of glucose-regulated protein 78 perturbs the unfolded protein response and exacerbates a spectrum of liver diseases in mice.
Hepatology 54: 229-39 (2011)
PM ID: 21503947 PMC3125405 NIHMS288241
225: Qiu X, Friedman JM, Liang G
Creating a flexible multiple microRNA expression vector by linking precursor microRNAs.
Biochem Biophys Res Commun 411: 276-80 (2011)
PM ID: 21726537 PMC3148277 NIHMS307892
226: Park E, Gang EJ, Hsieh YT, Schaefer P, Chae S, Klemm L, Huantes S, Loh M, Conway EM, Kang ES, Hoe Koo H, Hofmann WK, Heisterkamp N, Pelus L, Keerthivasan G, Crispino J, Kahn M, Müschen M, Kim YM
Targeting survivin overcomes drug resistance in acute lymphoblastic leukemia.
Blood 118: 2191-9 (2011)
PM ID: 21715311 PMC3162353
227: Davis-Dao CA, Siegmund KD, Vandenberg DJ, Skinner EC, Coetzee GA, Thomas DC, Pike MC, Cortessis VK
Heterogenous effect of androgen receptor CAG tract length on testicular germ cell tumor risk: shorter repeats associated with seminoma but not other histologic types.
Carcinogenesis 32: 1238-43 (2011)
PM ID: 21642359 PMC3202310
228: Buchanan G, Need EF, Barrett JM, Bianco-Miotto T, Thompson VC, Butler LM, Marshall VR, Tilley WD, Coetzee GA
Corepressor effect on androgen receptor activity varies with the length of the CAG encoded polyglutamine repeat and is dependent on receptor/corepressor ratio in prostate cancer cells.
Mol Cell Endocrinol 342: 20-31 (2011)
PM ID: 21664238 PMC3314496 NIHMS308521
229: Ye R, Ni M, Wang M, Luo S, Zhu G, Chow RH, Lee AS
Inositol 1,4,5-trisphosphate receptor 1 mutation perturbs glucose homeostasis and enhances susceptibility to diet-induced diabetes.
J Endocrinol 210: 209-17 (2011)
PM ID: 21565852 PMC3137733 NIHMS298818
230: You JS, Kelly TK, De Carvalho DD, Taberlay PC, Liang G, Jones PA
OCT4 establishes and maintains nucleosome-depleted regions that provide additional layers of epigenetic regulation of its target genes.
Proc Natl Acad Sci U S A 108: 14497-502 (2011)
PM ID: 21844352 PMC3167525
231: International Multiple Sclerosis Genetics Consortium , Wellcome Trust Case Control Consortium 2 , Sawcer S, Hellenthal G, Pirinen M, Spencer CC, Patsopoulos NA, Moutsianas L, Dilthey A, Su Z, Freeman C, Hunt SE, Edkins S, Gray E, Booth DR, Potter SC, Goris A, Band G, Oturai AB, Strange A, Saarela J, Bellenguez C, Fontaine B, Gillman M, Hemmer B, Gwilliam R, Zipp F, Jayakumar A, Martin R, Leslie S, Hawkins S, Giannoulatou E, D'Alfonso S, Blackburn H, Martinelli Boneschi F, Liddle J, Harbo HF, Perez ML, Spurkland A, Waller MJ, Mycko MP, Ricketts M, Comabella M, Hammond N, Kockum I, McCann OT, Ban M, Whittaker P, Kemppinen A, Weston P, Hawkins C, Widaa S, Zajicek J, Dronov S, Robertson N, Bumpstead SJ, Barcellos LF, Ravindrarajah R, Abraham R, Alfredsson L, Ardlie K, Aubin C, Baker A, Baker K, Baranzini SE, Bergamaschi L, Bergamaschi R, Bernstein A, Berthele A, Boggild M, Bradfield JP, Brassat D, Broadley SA, Buck D, Butzkueven H, Capra R, Carroll WM, Cavalla P, Celius EG, Cepok S, Chiavacci R, Clerget-Darpoux F, Clysters K, Comi G, Cossburn M, Cournu-Rebeix I, Cox MB, Cozen W, Cree BA, Cross AH, Cusi D, Daly MJ, Davis E, de Bakker PI, Debouverie M, D'hooghe MB, Dixon K, Dobosi R, Dubois B, Ellinghaus D, Elovaara I, Esposito F, Fontenille C, Foote S, Franke A, Galimberti D, Ghezzi A, Glessner J, Gomez R, Gout O, Graham C, Grant SF, Guerini FR, Hakonarson H, Hall P, Hamsten A, Hartung HP, Heard RN, Heath S, Hobart J, Hoshi M, Infante-Duarte C, Ingram G, Ingram W, Islam T, Jagodic M, Kabesch M, Kermode AG, Kilpatrick TJ, Kim C, Klopp N, Koivisto K, Larsson M, Lathrop M, Lechner-Scott JS, Leone MA, Leppä V, Liljedahl U, Bomfim IL, Lincoln RR, Link J, Liu J, Lorentzen AR, Lupoli S, Macciardi F, Mack T, Marriott M, Martinelli V, Mason D, McCauley JL, Mentch F, Mero IL, Mihalova T, Montalban X, Mottershead J, Myhr KM, Naldi P, Ollier W, Page A, Palotie A, Pelletier J, Piccio L, Pickersgill T, Piehl F, Pobywajlo S, Quach HL, Ramsay PP, Reunanen M, Reynolds R, Rioux JD, Rodegher M, Roesner S, Rubio JP, Rückert IM, Salvetti M, Salvi E, Santaniello A, Schaefer CA, Schreiber S, Schulze C, Scott RJ, Sellebjerg F, Selmaj KW, Sexton D, Shen L, Simms-Acuna B, Skidmore S, Sleiman PM, Smestad C, Sørensen PS, Søndergaard HB, Stankovich J, Strange RC, Sulonen AM, Sundqvist E, Syvänen AC, Taddeo F, Taylor B, Blackwell JM, Tienari P, Bramon E, Tourbah A, Brown MA, Tronczynska E, Casas JP, Tubridy N, Corvin A, Vickery J, Jankowski J, Villoslada P, Markus HS, Wang K, Mathew CG, Wason J, Palmer CN, Wichmann HE, Plomin R, Willoughby E, Rautanen A, Winkelmann J, Wittig M, Trembath RC, Yaouanq J, Viswanathan AC, Zhang H, Wood NW, Zuvich R, Deloukas P, Langford C, Duncanson A, Oksenberg JR, Pericak-Vance MA, Haines JL, Olsson T, Hillert J, Ivinson AJ, De Jager PL, Peltonen L, Stewart GJ, Hafler DA, Hauser SL, McVean G, Donnelly P, Compston A
Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
Nature 476: 214-9 (2011)
PM ID: 21833088 PMC3182531
232: Hinch AG, Tandon A, Patterson N, Song Y, Rohland N, Palmer CD, Chen GK, Wang K, Buxbaum SG, Akylbekova EL, Aldrich MC, Ambrosone CB, Amos C, Bandera EV, Berndt SI, Bernstein L, Blot WJ, Bock CH, Boerwinkle E, Cai Q, Caporaso N, Casey G, Cupples LA, Deming SL, Diver WR, Divers J, Fornage M, Gillanders EM, Glessner J, Harris CC, Hu JJ, Ingles SA, Isaacs W, John EM, Kao WH, Keating B, Kittles RA, Kolonel LN, Larkin E, Le Marchand L, McNeill LH, Millikan RC, Murphy A, Musani S, Neslund-Dudas C, Nyante S, Papanicolaou GJ, Press MF, Psaty BM, Reiner AP, Rich SS, Rodriguez-Gil JL, Rotter JI, Rybicki BA, Schwartz AG, Signorello LB, Spitz M, Strom SS, Thun MJ, Tucker MA, Wang Z, Wiencke JK, Witte JS, Wrensch M, Wu X, Yamamura Y, Zanetti KA, Zheng W, Ziegler RG, Zhu X, Redline S, Hirschhorn JN, Henderson BE, Taylor HA, Price AL, Hakonarson H, Chanock SJ, Haiman CA, Wilson JG, Reich D, Myers SR
The landscape of recombination in African Americans.
Nature 476: 170-5 (2011)
PM ID: 21775986 PMC3154982 NIHMS313104
233: Lee G, Liang C, Park G, Jang C, Jung JU, Chung J
UVRAG is required for organ rotation by regulating Notch endocytosis in Drosophila.
Dev Biol 356: 588-97 (2011)
PM ID: 21729695
234: Linnemann AK, O'Geen H, Keles S, Farnham PJ, Bresnick EH
Genetic framework for GATA factor function in vascular biology.
Proc Natl Acad Sci U S A 108: 13641-6 (2011)
PM ID: 21808000 PMC3158141
235: Zhong Q, Zhou B, Ann DK, Minoo P, Liu Y, Banfalvi A, Krishnaveni MS, Dubourd M, Demaio L, Willis BC, Kim KJ, Dubois RM, Crandall ED, Beers MF, Borok Z
Role of endoplasmic reticulum stress in epithelial-mesenchymal transition of alveolar epithelial cells: effects of misfolded surfactant protein.
Am J Respir Cell Mol Biol 45: 498-509 (2011)
PM ID: 21169555 PMC3175581
236: Yu EJ, Kim SH, Heo K, Ou CY, Stallcup MR, Kim JH
Reciprocal roles of DBC1 and SIRT1 in regulating estrogen receptor α activity and co-activator synergy.
Nucleic Acids Res 39: 6932-43 (2011)
PM ID: 21596782 PMC3167635
237: Zaro BW, Bateman LA, Pratt MR
Robust in-gel fluorescence detection of mucin-type O-linked glycosylation.
Bioorg Med Chem Lett 21: 5062-6 (2011)
PM ID: 21531554
238: Wang J, Siegmund K, Tseng CC, Lee AS, Wu AH
Soy food supplementation, dietary fat reduction and peripheral blood gene expression in postmenopausal women--a randomized, controlled trial.
Mol Nutr Food Res 55 Suppl 2: S264-77 (2011)
PM ID: 21823222 PMC3819223 NIHMS518129
239: Fazlollahi F, Angelow S, Yacobi NR, Marchelletta R, Yu AS, Hamm-Alvarez SF, Borok Z, Kim KJ, Crandall ED
Polystyrene nanoparticle trafficking across MDCK-II.
Nanomedicine 7: 588-94 (2011)
PM ID: 21310266 PMC3130091 NIHMS273797
240: Kim H, Heo K, Choi J, Kim K, An W
Histone variant H3.3 stimulates HSP70 transcription through cooperation with HP1γ.
Nucleic Acids Res 39: 8329-41 (2011)
PM ID: 21742762 PMC3201866
241: Baylin SB, Jones PA
A decade of exploring the cancer epigenome - biological and translational implications.
Nat Rev Cancer 11: 726-34 (2011)
PM ID: 21941284 PMC3307543 NIHMS358721
242: Kahn M
Symmetric division versus asymmetric division: a tale of two coactivators.
Future Med Chem 3: 1745-63 (2011)
PM ID: 22004083
243: Winder T, Bohanes P, Zhang W, Yang D, Power DG, Ning Y, Gerger A, Wilson PM, Tang LH, Shah M, Lee AS, Lenz HJ
GRP78 promoter polymorphism rs391957 as potential predictor for clinical outcome in gastric and colorectal cancer patients.
Ann Oncol 22: 2431-9 (2011)
PM ID: 21382870 PMC3200220
244: Miki T, Yasuda SY, Kahn M
Wnt/β-catenin signaling in embryonic stem cell self-renewal and somatic cell reprogramming.
Stem Cell Rev 7: 836-46 (2011)
PM ID: 21603945
245: Han H, Cortez CC, Yang X, Nichols PW, Jones PA, Liang G
DNA methylation directly silences genes with non-CpG island promoters and establishes a nucleosome occupied promoter.
Hum Mol Genet 20: 4299-310 (2011)
PM ID: 21835883 PMC3196883
246: Gerger A, Zhang W, Yang D, Bohanes P, Ning Y, Winder T, LaBonte MJ, Wilson PM, Benhaim L, Paez D, El-Khoueiry R, El-Khoueiry A, Kahn M, Lenz HJ
Common cancer stem cell gene variants predict colon cancer recurrence.
Clin Cancer Res 17: 6934-43 (2011)
PM ID: 21918173
247: Cheng CF, Sahu D, Tsen F, Zhao Z, Fan J, Kim R, Wang X, O'Brien K, Li Y, Kuang Y, Chen M, Woodley DT, Li W
A fragment of secreted Hsp90α carries properties that enable it to accelerate effectively both acute and diabetic wound healing in mice.
J Clin Invest 121: 4348-61 (2011)
PM ID: 22019588 PMC3204835
248: Choi J, Kim H, Kim K, Lee B, Lu W, An W
Selective requirement of H2B N-Terminal tail for p14ARF-induced chromatin silencing.
Nucleic Acids Res 39: 9167-80 (2011)
PM ID: 21846774 PMC3241654
249: Purcell DJ, Jeong KW, Bittencourt D, Gerke DS, Stallcup MR
A distinct mechanism for coactivator versus corepressor function by histone methyltransferase G9a in transcriptional regulation.
J Biol Chem 286: 41963-71 (2011)
PM ID: 21984853 PMC3234941
250: Andreu-Vieyra C, Lai J, Berman BP, Frenkel B, Jia L, Jones PA, Coetzee GA
Dynamic nucleosome-depleted regions at androgen receptor enhancers in the absence of ligand in prostate cancer cells.
Mol Cell Biol 31: 4648-62 (2011)
PM ID: 21969603 PMC3232925
251: Tian Y, Sir D, Kuo CF, Ann DK, Ou JH
Autophagy required for hepatitis B virus replication in transgenic mice.
J Virol 85: 13453-6 (2011)
PM ID: 21957292 PMC3233133
252: Razzak AA, Oxentenko AS, Vierkant RA, Tillmans LS, Wang AH, Weisenberger DJ, Laird PW, Lynch CF, Anderson KE, French AJ, Haile RW, Harnack LJ, Slager SL, Smyrk TC, Thibodeau SN, Cerhan JR, Limburg PJ
Alcohol intake and colorectal cancer risk by molecularly defined subtypes in a prospective study of older women.
Cancer Prev Res (Phila) 4: 2035-43 (2011)
PM ID: 21900595 PMC3584678 NIHMS441368
253: Cortessis VK, Siegmund K, Houshdaran S, Laird PW, Sokol RZ
Repeated assessment by high-throughput assay demonstrates that sperm DNA methylation levels are highly reproducible.
Fertil Steril 96: 1325-30 (2011)
PM ID: 22035967 PMC3448450 NIHMS334785
254: Zeng N, Li Y, He L, Xu X, Galicia V, Deng C, Stiles BL
Adaptive basal phosphorylation of eIF2α is responsible for resistance to cellular stress-induced cell death in Pten-null hepatocytes.
Mol Cancer Res 9: 1708-17 (2011)
PM ID: 22009178
255: Jeong KW, Kim K, Situ AJ, Ulmer TS, An W, Stallcup MR
Recognition of enhancer element-specific histone methylation by TIP60 in transcriptional activation.
Nat Struct Mol Biol 18: 1358-65 (2011)
PM ID: 22081016 PMC3230772 NIHMS321138
256: Taberlay PC, Kelly TK, Liu CC, You JS, De Carvalho DD, Miranda TB, Zhou XJ, Liang G, Jones PA
Polycomb-repressed genes have permissive enhancers that initiate reprogramming.
Cell 147: 1283-94 (2011)
PM ID: 22153073 PMC3240866 NIHMS338207
257: Noushmehr H, Coetzee GA
Identification and functional annotation of GWAS risk SNPs.
Cell Cycle 10: 3995-6 (2011)
PM ID: 22101276
258: International Stem Cell Initiative , Amps K, Andrews PW, Anyfantis G, Armstrong L, Avery S, Baharvand H, Baker J, Baker D, Munoz MB, Beil S, Benvenisty N, Ben-Yosef D, Biancotti JC, Bosman A, Brena RM, Brison D, Caisander G, Camarasa MV, Chen J, Chiao E, Choi YM, Choo AB, Collins D, Colman A, Crook JM, Daley GQ, Dalton A, De Sousa PA, Denning C, Downie J, Dvorak P, Montgomery KD, Feki A, Ford A, Fox V, Fraga AM, Frumkin T, Ge L, Gokhale PJ, Golan-Lev T, Gourabi H, Gropp M, Lu G, Hampl A, Harron K, Healy L, Herath W, Holm F, Hovatta O, Hyllner J, Inamdar MS, Irwanto AK, Ishii T, Jaconi M, Jin Y, Kimber S, Kiselev S, Knowles BB, Kopper O, Kukharenko V, Kuliev A, Lagarkova MA, Laird PW, Lako M, Laslett AL, Lavon N, Lee DR, Lee JE, Li C, Lim LS, Ludwig TE, Ma Y, Maltby E, Mateizel I, Mayshar Y, Mileikovsky M, Minger SL, Miyazaki T, Moon SY, Moore H, Mummery C, Nagy A, Nakatsuji N, Narwani K, Oh SK, Oh SK, Olson C, Otonkoski T, Pan F, Park IH, Pells S, Pera MF, Pereira LV, Qi O, Raj GS, Reubinoff B, Robins A, Robson P, Rossant J, Salekdeh GH, Schulz TC, Sermon K, Sheik Mohamed J, Shen H, Sherrer E, Sidhu K, Sivarajah S, Skottman H, Spits C, Stacey GN, Strehl R, Strelchenko N, Suemori H, Sun B, Suuronen R, Takahashi K, Tuuri T, Venu P, Verlinsky Y, Ward-van Oostwaard D, Weisenberger DJ, Wu Y, Yamanaka S, Young L, Zhou Q
Screening ethnically diverse human embryonic stem cells identifies a chromosome 20 minimal amplicon conferring growth advantage.
Nat Biotechnol 29: 1132-44 (2011)
PM ID: 22119741 PMC3454460 NIHMS399467
259: Zhou X, Maricque B, Xie M, Li D, Sundaram V, Martin EA, Koebbe BC, Nielsen C, Hirst M, Farnham P, Kuhn RM, Zhu J, Smirnov I, Kent WJ, Haussler D, Madden PA, Costello JF, Wang T
The Human Epigenome Browser at Washington University.
Nat Methods 8: 989-90 (2011)
PM ID: 22127213 PMC3552640 NIHMS428121
260: Sharma S, Gerke DS, Han HF, Jeong S, Stallcup MR, Jones PA, Liang G
Lysine methyltransferase G9a is not required for DNMT3A/3B anchoring to methylated nucleosomes and maintenance of DNA methylation in somatic cells.
Epigenetics Chromatin 5: 3 (2012)
PM ID: 22284370 PMC3292817
261: Kennedy BA, Lan X, Huang TH, Farnham PJ, Jin VX
Using ChIPMotifs for de novo motif discovery of OCT4 and ZNF263 based on ChIP-based high-throughput experiments.
Methods Mol Biol 802: 323-34 (2012)
PM ID: 22130890
262: Loo LW, Cheng I, Tiirikainen M, Lum-Jones A, Seifried A, Dunklee LM, Church JM, Gryfe R, Weisenberger DJ, Haile RW, Gallinger S, Duggan DJ, Thibodeau SN, Casey G, Le Marchand L
cis-Expression QTL analysis of established colorectal cancer risk variants in colon tumors and adjacent normal tissue.
PLoS One 7: e30477 (2012)
PM ID: 22363440 PMC3281844
263: Yang X, Noushmehr H, Han H, Andreu-Vieyra C, Liang G, Jones PA
Gene reactivation by 5-aza-2'-deoxycytidine-induced demethylation requires SRCAP-mediated H2A.Z insertion to establish nucleosome depleted regions.
PLoS Genet 8: e1002604 (2012)
PM ID: 22479200 PMC3315468
264: Yusuf D, Butland SL, Swanson MI, Bolotin E, Ticoll A, Cheung WA, Zhang XY, Dickman CT, Fulton DL, Lim JS, Schnabl JM, Ramos OH, Vasseur-Cognet M, de Leeuw CN, Simpson EM, Ryffel GU, Lam EW, Kist R, Wilson MS, Marco-Ferreres R, Brosens JJ, Beccari LL, Bovolenta P, Benayoun BA, Monteiro LJ, Schwenen HD, Grontved L, Wederell E, Mandrup S, Veitia RA, Chakravarthy H, Hoodless PA, Mancarelli MM, Torbett BE, Banham AH, Reddy SP, Cullum RL, Liedtke M, Tschan MP, Vaz M, Rizzino A, Zannini M, Frietze S, Farnham PJ, Eijkelenboom A, Brown PJ, Laperrière D, Leprince D, de Cristofaro T, Prince KL, Putker M, Del Peso L, Camenisch G, Wenger RH, Mikula M, Rozendaal M, Mader S, Ostrowski J, Rhodes SJ, Van Rechem C, Boulay G, Olechnowicz SW, Breslin MB, Lan MS, Nanan KK, Wegner M, Hou J, Mullen RD, Colvin SC, Noy PJ, Webb CF, Witek ME, Ferrell S, Daniel JM, Park J, Waldman SA, Peet DJ, Taggart M, Jayaraman PS, Karrich JJ, Blom B, Vesuna F, O'Geen H, Sun Y, Gronostajski RM, Woodcroft MW, Hough MR, Chen E, Europe-Finner GN, Karolczak-Bayatti M, Bailey J, Hankinson O, Raman V, Lebrun DP, Biswal S, Harvey CJ, Debruyne JP, Hogenesch JB, Hevner RF, Héligon C, Luo XM, Blank MC, Millen KJ, Sharlin DS, Forrest D, Dahlman-Wright K, Zhao C, Mishima Y, Sinha S, Chakrabarti R, Portales-Casamar E, Sladek FM, Bradley PH, Wasserman WW
The transcription factor encyclopedia.
Genome Biol 13: R24 (2012)
PM ID: 22458515 PMC3439975
265: Brusslan JA, Rus Alvarez-Canterbury AM, Nair NU, Rice JC, Hitchler MJ, Pellegrini M
Genome-wide evaluation of histone methylation changes associated with leaf senescence in Arabidopsis.
PLoS One 7: e33151 (2012)
PM ID: 22427974 PMC3299739
266: Zhou B, Buckley ST, Patel V, Liu Y, Luo J, Krishnaveni MS, Ivan M, Demaio L, Kim KJ, Ehrhardt C, Crandall ED, Borok Z
Troglitazone attenuates TGF-β1-induced EMT in alveolar epithelial cells via a PPARγ-independent mechanism.
PLoS One 7: e38827 (2012)
PM ID: 22745681 PMC3380041
267: Wey S, Luo B, Lee AS
Acute inducible ablation of GRP78 reveals its role in hematopoietic stem cell survival, lymphogenesis and regulation of stress signaling.
PLoS One 7: e39047 (2012)
PM ID: 22723926 PMC3377598
268: Han H, Wolff EM, Liang G
Epigenetic alterations in bladder cancer and their potential clinical implications.
Adv Urol 2012: 546917 (2012)
PM ID: 22829811 PMC3397159
269: Ng CS, Wu P, Foley J, Foley A, McDonald ML, Juan WT, Huang CJ, Lai YT, Lo WS, Chen CF, Leal SM, Zhang H, Widelitz RB, Patel PI, Li WH, Chuong CM
The chicken frizzle feather is due to an α-keratin (KRT75) mutation that causes a defective rachis.
PLoS Genet 8: e1002748 (2012)
PM ID: 22829773 PMC3400578
270: Ren X, Xu J, Cooper JP, Kang MH, Erdreich-Epstein A
c-Abl is an upstream regulator of acid sphingomyelinase in apoptosis induced by inhibition of integrins αvβ3 and αvβ5.
PLoS One 7: e42291 (2012)
PM ID: 22879933 PMC3411766
271: Frietze S, Wang R, Yao L, Tak YG, Ye Z, Gaddis M, Witt H, Farnham PJ, Jin VX
Cell type-specific binding patterns reveal that TCF7L2 can be tethered to the genome by association with GATA3.
Genome Biol 13: R52 (2012)
PM ID: 22951069 PMC3491396
272: Razzak AA, Oxentenko AS, Vierkant RA, Tillmans LS, Wang AH, Weisenberger DJ, Laird PW, Lynch CF, Anderson KE, French AJ, Haile RW, Harnack LJ, Potter JD, Slager SL, Smyrk TC, Thibodeau SN, Cerhan JR, Limburg PJ
Associations between intake of folate and related micronutrients with molecularly defined colorectal cancer risks in the Iowa Women's Health Study.
Nutr Cancer 64: 899-910 (2012)
PM ID: 23061900 PMC3584680 NIHMS442516
273: Lange CP, Campan M, Hinoue T, Schmitz RF, van der Meulen-de Jong AE, Slingerland H, Kok PJ, van Dijk CM, Weisenberger DJ, Shen H, Tollenaar RA, Laird PW
Genome-scale discovery of DNA-methylation biomarkers for blood-based detection of colorectal cancer.
PLoS One 7: e50266 (2012)
PM ID: 23209692 PMC3508917
274: Lee SH, Toth Z, Wong LY, Brulois K, Nguyen J, Lee JY, Zandi E, Jung JU
Novel Phosphorylations of IKKγ/NEMO.
MBio 3: e00411-12 (2012)
PM ID: 23131831 PMC3487776
275: Wey S, Luo B, Tseng CC, Ni M, Zhou H, Fu Y, Bhojwani D, Carroll WL, Lee AS
Inducible knockout of GRP78/BiP in the hematopoietic system suppresses Pten-null leukemogenesis and AKT oncogenic signaling.
Blood 119: 817-25 (2012)
PM ID: 21937694 PMC3265205
276: Treppendahl MB, Qiu X, Søgaard A, Yang X, Nandrup-Bus C, Hother C, Andersen MK, Kjeldsen L, Möllgård L, Möllgaard L, Hellström-Lindberg E, Jendholm J, Porse BT, Jones PA, Liang G, Grønbaek K
Allelic methylation levels of the noncoding VTRNA2-1 located on chromosome 5q31.1 predict outcome in AML.
Blood 119: 206-16 (2012)
PM ID: 22058117 PMC3251229
277: Coetzee GA
The usefulness of prostate cancer genome-wide association studies.
J Urol 187: 9-10 (2012)
PM ID: 22088348
278: Berman BP, Weisenberger DJ, Aman JF, Hinoue T, Ramjan Z, Liu Y, Noushmehr H, Lange CP, van Dijk CM, Tollenaar RA, Van Den Berg D, Laird PW
Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina-associated domains.
Nat Genet 44: 40-6 (2012)
PM ID: 22120008
279: Iwata J, Tung L, Urata M, Hacia JG, Pelikan R, Suzuki A, Ramenzoni L, Chaudhry O, Parada C, Sanchez-Lara PA, Chai Y
Fibroblast growth factor 9 (FGF9)-pituitary homeobox 2 (PITX2) pathway mediates transforming growth factor β (TGFβ) signaling to regulate cell proliferation in palatal mesenchyme during mouse palatogenesis.
J Biol Chem 287: 2353-63 (2012)
PM ID: 22123828 PMC3268397
280: Kang YA, Sanalkumar R, O'Geen H, Linnemann AK, Chang CJ, Bouhassira EE, Farnham PJ, Keles S, Bresnick EH
Autophagy driven by a master regulator of hematopoiesis.
Mol Cell Biol 32: 226-39 (2012)
PM ID: 22025678 PMC3255705
281: Hinoue T, Weisenberger DJ, Lange CP, Shen H, Byun HM, Van Den Berg D, Malik S, Pan F, Noushmehr H, van Dijk CM, Tollenaar RA, Laird PW
Genome-scale analysis of aberrant DNA methylation in colorectal cancer.
Genome Res 22: 271-82 (2012)
PM ID: 21659424 PMC3266034
282: Jenkins G, Blanchard A, Borok Z, Bradding P, Ehrhardt C, Fisher A, Hirani N, Johnson S, Königshoff M, Maher TM, Millar A, Parfrey H, Scotton C, Tetley T, Thickett D, Wolters P, ECIPF workshop
In search of the fibrotic epithelial cell: opportunities for a collaborative network.
Thorax 67: 179-82 (2012)
PM ID: 21680569
283: Ianculescu I, Wu DY, Siegmund KD, Stallcup MR
Selective roles for cAMP response element-binding protein binding protein and p300 protein as coregulators for androgen-regulated gene expression in advanced prostate cancer cells.
J Biol Chem 287: 4000-13 (2012)
PM ID: 22174411 PMC3281703
284: Levine AJ, Win AK, Buchanan DD, Jenkins MA, Baron JA, Young JP, Long TI, Weisenberger DJ, Laird PW, McCall RL, Duggan DJ, Haile RW
Cancer risks for the relatives of colorectal cancer cases with a methylated MLH1 promoter region: data from the Colorectal Cancer Family Registry.
Cancer Prev Res (Phila) 5: 328-35 (2012)
PM ID: 22144422 PMC3273599 NIHMS342641
285: Sahu D, Zhao Z, Tsen F, Cheng CF, Park R, Situ AJ, Dai J, Eginli A, Shams S, Chen M, Ulmer TS, Conti P, Woodley DT, Li W
A potentially common peptide target in secreted heat shock protein-90α for hypoxia-inducible factor-1α-positive tumors.
Mol Biol Cell 23: 602-13 (2012)
PM ID: 22190738 PMC3279389
286: Chimge NO, Baniwal SK, Luo J, Coetzee S, Khalid O, Berman BP, Tripathy D, Ellis MJ, Frenkel B
Opposing effects of Runx2 and estradiol on breast cancer cell proliferation: in vitro identification of reciprocally regulated gene signature related to clinical letrozole responsiveness.
Clin Cancer Res 18: 901-11 (2012)
PM ID: 22147940 PMC3277803 NIHMS342908
287: Kim K, Heo K, Choi J, Jackson S, Kim H, Xiong Y, An W
Vpr-binding protein antagonizes p53-mediated transcription via direct interaction with H3 tail.
Mol Cell Biol 32: 783-96 (2012)
PM ID: 22184063 PMC3272969
288: Kim H, Kim K, Choi J, Heo K, Baek HJ, Roeder RG, An W
p53 requires an intact C-terminal domain for DNA binding and transactivation.
J Mol Biol 415: 843-54 (2012)
PM ID: 22178617 PMC3267882 NIHMS343347
289: Choi I, Lee S, Kyoung Chung H, Suk Lee Y, Eui Kim K, Choi D, Park EK, Yang D, Ecoiffier T, Monahan J, Chen W, Aguilar B, Lee HN, Yoo J, Koh CJ, Chen L, Wong AK, Hong YK
9-cis retinoic acid promotes lymphangiogenesis and enhances lymphatic vessel regeneration: therapeutic implications of 9-cis retinoic acid for secondary lymphedema.
Circulation 125: 872-82 (2012)
PM ID: 22275501 PMC3327127 NIHMS357408
290: Liang C
Viral FLIPping autophagy for longevity.
Cell Host Microbe 11: 101-3 (2012)
PM ID: 22341458
291: Moon BC, Hernandez-Ono A, Stiles B, Wu H, Ginsberg HN
Apolipoprotein B secretion is regulated by hepatic triglyceride, and not insulin, in a model of increased hepatic insulin signaling.
Arterioscler Thromb Vasc Biol 32: 236-46 (2012)
PM ID: 22155452 PMC3870321 NIHMS521447
292: Li W, Sahu D, Tsen F
Secreted heat shock protein-90 (Hsp90) in wound healing and cancer.
Biochim Biophys Acta 1823: 730-41 (2012)
PM ID: 21982864 PMC3266443 NIHMS328588
293: Demaio L, Buckley ST, Krishnaveni MS, Flodby P, Dubourd M, Banfalvi A, Xing Y, Ehrhardt C, Minoo P, Zhou B, Crandall ED, Borok Z
Ligand-independent transforming growth factor-β type I receptor signalling mediates type I collagen-induced epithelial-mesenchymal transition.
J Pathol 226: 633-44 (2012)
PM ID: 21984393 PMC4012689 NIHMS545762
294: Davis-Dao C, Koh CJ, Hardy BE, Chang A, Kim SS, De Filippo R, Hwang A, Pike MC, Carroll JD, Coetzee GA, VanDenBerg D, Siegmund K, Cortessis VK
Shorter androgen receptor CAG repeat lengths associated with cryptorchidism risk among Hispanic white boys.
J Clin Endocrinol Metab 97: E393-9 (2012)
PM ID: 22188741
295: Zhou B, Liu Y, Kahn M, Ann DK, Han A, Wang H, Nguyen C, Flodby P, Zhong Q, Krishnaveni MS, Liebler JM, Minoo P, Crandall ED, Borok Z
Interactions between β-catenin and transforming growth factor-β signaling pathways mediate epithelial-mesenchymal transition and are dependent on the transcriptional co-activator cAMP-response element-binding protein (CREB)-binding protein (CBP).
J Biol Chem 287: 7026-38 (2012)
PM ID: 22241478 PMC3293544
296: Iwata J, Hacia JG, Suzuki A, Sanchez-Lara PA, Urata M, Chai Y
Modulation of noncanonical TGF-β signaling prevents cleft palate in Tgfbr2 mutant mice.
J Clin Invest 122: 873-85 (2012)
PM ID: 22326956 PMC3287237
297: Lin HH, Li X, Chen JL, Sun X, Cooper FN, Chen YR, Zhang W, Chung Y, Li A, Cheng CT, Yang L, Deng X, Liu X, Yen Y, Johnson DL, Shih HM, Yang A, Ann DK
Identification of an AAA ATPase VPS4B-dependent pathway that modulates epidermal growth factor receptor abundance and signaling during hypoxia.
Mol Cell Biol 32: 1124-38 (2012)
PM ID: 22252323 PMC3295017
298: Meier F, Abeywardana T, Dhall A, Marotta NP, Varkey J, Langen R, Chatterjee C, Pratt MR
Semisynthetic, site-specific ubiquitin modification of α-synuclein reveals differential effects on aggregation.
J Am Chem Soc 134: 5468-71 (2012)
PM ID: 22404520 PMC3315850 NIHMS363882
299: Yang CS, Lee JS, Rodgers M, Min CK, Lee JY, Kim HJ, Lee KH, Kim CJ, Oh B, Zandi E, Yue Z, Kramnik I, Liang C, Jung JU
Autophagy protein Rubicon mediates phagocytic NADPH oxidase activation in response to microbial infection or TLR stimulation.
Cell Host Microbe 11: 264-76 (2012)
PM ID: 22423966 PMC3616771 NIHMS361158
300: Wang J, Joshi AD, Corral R, Siegmund KD, Marchand LL, Martinez ME, Haile RW, Ahnen DJ, Sandler RS, Lance P, Stern MC
Carcinogen metabolism genes, red meat and poultry intake, and colorectal cancer risk.
Int J Cancer 130: 1898-907 (2012)
PM ID: 21618522 PMC3883510 NIHMS320311
301: Little GH, Noushmehr H, Baniwal SK, Berman BP, Coetzee GA, Frenkel B
Genome-wide Runx2 occupancy in prostate cancer cells suggests a role in regulating secretion.
Nucleic Acids Res 40: 3538-47 (2012)
PM ID: 22187159 PMC3333873
302: Xu J, Erdreich-Epstein A, Gonzalez-Gomez I, Melendez EY, Smbatyan G, Moats RA, Rosol M, Biegel JA, Reynolds CP
Novel cell lines established from pediatric brain tumors.
J Neurooncol 107: 269-80 (2012)
PM ID: 22120608 PMC3379550 NIHMS380597
303: Yoo SA, You S, Yoon HJ, Kim DH, Kim HS, Lee K, Ahn JH, Hwang D, Lee AS, Kim KJ, Park YJ, Cho CS, Kim WU
A novel pathogenic role of the ER chaperone GRP78/BiP in rheumatoid arthritis.
J Exp Med 209: 871-86 (2012)
PM ID: 22430489 PMC3328363
304: Zhang H, Liu H, Borok Z, Davies KJ, Ursini F, Forman HJ
Cigarette smoke extract stimulates epithelial-mesenchymal transition through Src activation.
Free Radic Biol Med 52: 1437-42 (2012)
PM ID: 22342303 PMC3312989 NIHMS355137
305: Kerin T, Ramanathan A, Rivas K, Grepo N, Coetzee GA, Campbell DB
A noncoding RNA antisense to moesin at 5p14.1 in autism.
Sci Transl Med 4: 128ra40 (2012)
PM ID: 22491950
306: Chuong CM, Randall VA, Widelitz RB, Wu P, Jiang TX
Physiological regeneration of skin appendages and implications for regenerative medicine.
Physiology (Bethesda) 27: 61-72 (2012)
PM ID: 22505663 PMC3620028 NIHMS444851
307: Ting MC, Liao CP, Yan C, Jia L, Groshen S, Frenkel B, Roy-Burman P, Coetzee GA, Maxson R
An enhancer from the 8q24 prostate cancer risk region is sufficient to direct reporter gene expression to a subset of prostate stem-like epithelial cells in transgenic mice.
Dis Model Mech 5: 366-74 (2012)
PM ID: 22279083 PMC3339830
308: Han D, Zhao H, Parada C, Hacia JG, Bringas P, Chai Y
A TGFβ-Smad4-Fgf6 signaling cascade controls myogenic differentiation and myoblast fusion during tongue development.
Development 139: 1640-50 (2012)
PM ID: 22438570 PMC3317969
309: Xing Y, Li A, Borok Z, Li C, Minoo P
NOTCH1 is required for regeneration of Clara cells during repair of airway injury.
Stem Cells 30: 946-55 (2012)
PM ID: 22331706 PMC4005608 NIHMS546920
310: Zhao Z, Oh S, Li D, Ni D, Pirooz SD, Lee JH, Yang S, Lee JY, Ghozalli I, Costanzo V, Stark JM, Liang C
A dual role for UVRAG in maintaining chromosomal stability independent of autophagy.
Dev Cell 22: 1001-16 (2012)
PM ID: 22542840 PMC3356442 NIHMS367824
311: De Carvalho DD, Sharma S, You JS, Su SF, Taberlay PC, Kelly TK, Yang X, Liang G, Jones PA
DNA methylation screening identifies driver epigenetic events of cancer cell survival.
Cancer Cell 21: 655-67 (2012)
PM ID: 22624715 PMC3395886 NIHMS374702
312: Gozali AE, Britt B, Shane L, Gonzalez I, Gilles F, McComb JG, Krieger MD, Lavey RS, Shlien A, Villablanca JG, Erdreich-Epstein A, Dhall G, Jubran R, Tabori U, Malkin D, Finlay JL
Choroid plexus tumors; management, outcome, and association with the Li-Fraumeni syndrome: the Children's Hospital Los Angeles (CHLA) experience, 1991-2010.
Pediatr Blood Cancer 58: 905-9 (2012)
PM ID: 21990040
313: Won Jeong K, Chodankar R, Purcell DJ, Bittencourt D, Stallcup MR
Gene-specific patterns of coregulator requirements by estrogen receptor-α in breast cancer cells.
Mol Endocrinol 26: 955-66 (2012)
PM ID: 22543272 PMC3355545
314: Yen HY, Gabet Y, Liu Y, Martin A, Wu NL, Pike MC, Frenkel B, Maxson R, Dubeau L
Alterations in Brca1 expression in mouse ovarian granulosa cells have short-term and long-term consequences on estrogen-responsive organs.
Lab Invest 92: 802-11 (2012)
PM ID: 22488153
315: Tong C, Huang G, Ashton C, Wu H, Yan H, Ying QL
Rapid and cost-effective gene targeting in rat embryonic stem cells by TALENs.
J Genet Genomics 39: 275-80 (2012)
PM ID: 22749015 PMC3856761 NIHMS533949
316: Purcell DJ, Khalid O, Ou CY, Little GH, Frenkel B, Baniwal SK, Stallcup MR
Recruitment of coregulator G9a by Runx2 for selective enhancement or suppression of transcription.
J Cell Biochem 113: 2406-14 (2012)
PM ID: 22389001 PMC3350606 NIHMS363705
317: Jung CJ, Iyengar S, Blahnik KR, Jiang JX, Tahimic C, Torok NJ, De Vere White RW, Farnham PJ, Zern M
Human ESC self-renewal promoting microRNAs induce epithelial-mesenchymal transition in hepatocytes by controlling the PTEN and TGFβ tumor suppressor signaling pathways.
Mol Cancer Res 10: 979-91 (2012)
PM ID: 22622027
318: Jones PA
Functions of DNA methylation: islands, start sites, gene bodies and beyond.
Nat Rev Genet 13: 484-92 (2012)
PM ID: 22641018
319: Selamat SA, Chung BS, Girard L, Zhang W, Zhang Y, Campan M, Siegmund KD, Koss MN, Hagen JA, Lam WL, Lam S, Gazdar AF, Laird-Offringa IA
Genome-scale analysis of DNA methylation in lung adenocarcinoma and integration with mRNA expression.
Genome Res 22: 1197-211 (2012)
PM ID: 22613842 PMC3396362
320: You JS, Jones PA
Cancer genetics and epigenetics: two sides of the same coin?
Cancer Cell 22: 9-20 (2012)
PM ID: 22789535 PMC3396881 NIHMS388188
321: Liu Y, Siegmund KD, Laird PW, Berman BP
Bis-SNP: Combined DNA methylation and SNP calling for Bisulfite-seq data.
Genome Biol 13: R61 (2012)
PM ID: 22784381 PMC3491382
322: Muzny DM, Bainbridge MN, Chang K, Dinh HH, Drummond JA, Fowler G, Kovar CL, Lewis LR, Morgan MB, Newsham IF, Reid JG, Santibanez J, Shinbrot E, Trevino LR, Wu YQ, Wang M, Gunaratne P, Donehower LA, Creighton CJ, Wheeler DA, Gibbs RA, Lawrence MS, Voet D, Jing R, Cibulskis K, Sivachenko A, Stojanov P, McKenna A, Lander ES, Gabriel S, Getz G, Ding L, Fulton RS, Koboldt DC, Wylie T, Walker J, Dooling DJ, Fulton L, Delehaunty KD, Fronick CC, Demeter R, Mardis ER, Wilson RK, Chu A, Chun HJ, Mungall AJ, Pleasance E, Robertson A, Stoll D, Balasundaram M, Birol I, Butterfield YS, Chuah E, Coope RJ, Dhalla N, Guin R, Hirst C, Hirst M, Holt RA, Lee D, Li HI, Mayo M, Moore RA, Schein JE, Slobodan JR, Tam A, Thiessen N, Varhol R, Zeng T, Zhao Y, Jones SJ, Marra MA, Bass AJ, Ramos AH, Saksena G, Cherniack AD, Schumacher SE, Tabak B, Carter SL, Pho NH, Nguyen H, Onofrio RC, Crenshaw A, Ardlie K, Beroukhim R, Winckler W, Getz G, Meyerson M, Protopopov A, Zhang J, Hadjipanayis A, Lee E, Xi R, Yang L, Ren X, Zhang H, Sathiamoorthy N, Shukla S, Chen PC, Haseley P, Xiao Y, Lee S, Seidman J, Chin L, Park PJ, Kucherlapati R, Auman JT, Hoadley KA, Du Y, Wilkerson MD, Shi Y, Liquori C, Meng S, Li L, Turman YJ, Topal MD, Tan D, Waring S, Buda E, Walsh J, Jones CD, Mieczkowski PA, Singh D, Wu J, Gulabani A, Dolina P, Bodenheimer T, Hoyle AP, Simons JV, Soloway M, Mose LE, Jefferys SR, Balu S, O'Connor BD, Prins JF, Chiang DY, Hayes D, Perou CM, Hinoue T, Weisenberger DJ, Maglinte DT, Pan F, Berman BP, Van Den Berg DJ, Shen H, Triche T, Baylin SB, Laird PW, Getz G, Noble M, Voet D, Saksena G, Gehlenborg N, DiCara D, Zhang J, Zhang H, Wu CJ, Liu SY, Shukla S, Lawrence MS, Zhou L, Sivachenko A, Lin P, Stojanov P, Jing R, Park RW, Nazaire MD, Robinson J, Thorvaldsdottir H, Mesirov J, Park PJ, Chin L, Thorsson V, Reynolds SM, Bernard B, Kreisberg R, Lin J, Iype L, Bressler R, Erkkilä T, Gundapuneni M, Liu Y, Norberg A, Robinson T, Yang D, Zhang W, Shmulevich I, de Ronde JJ, Schultz N, Cerami E, Ciriello G, Goldberg AP, Gross B, Jacobsen A, Gao J, Kaczkowski B, Sinha R, Aksoy B, Antipin Y, Reva B, Shen R, Taylor BS, Chan TA, Ladanyi M, Sander C, Akbani R, Zhang N, Broom BM, Casasent T, Unruh A, Wakefield C, Hamilton SR, Cason R, Baggerly KA, Weinstein JN, Haussler D, Benz CC, Stuart JM, Benz SC, Sanborn J, Vaske CJ, Zhu J, Szeto C, Scott GK, Yau C, Ng S, Goldstein T, Ellrott K, Collisson E, Cozen AE, Zerbino D, Wilks C, Craft B, Spellman P, Penny R, Shelton T, Hatfield M, Morris S, Yena P, Shelton C, Sherman M, Paulauskis J, Gastier-Foster JM, Bowen J, Ramirez NC, Black A, Pyatt R, Wise L, White P, Bertagnolli M, Brown J, Chan TA, Chu GC, Czerwinski C, Denstman F, Dhir R, Dörner A, Fuchs CS, Guillem JG, Iacocca M, Juhl H, Kaufman A, Kohl B, Van Le X, Mariano MC, Medina EN, Meyers M, Nash GM, Paty PB, Petrelli N, Rabeno B, Richards WG, Solit D, Swanson P, Temple L, Tepper JE, Thorp R, Vakiani E, Weiser MR, Willis JE, Witkin G, Zeng Z, Zinner MJ, Zornig C, Jensen MA, Sfeir R, Kahn AB, Chu AL, Kothiyal P, Wang Z, Snyder EE, Pontius J, Pihl TD, Ayala B, Backus M, Walton J, Whitmore J, Baboud J, Berton DL, Nicholls MC, Srinivasan D, Raman R, Girshik S, Kigonya PA, Alonso S, Sanbhadti RN, Barletta SP, Greene JM, Pot DA, Shaw KR, Dillon LA, Buetow K, Davidsen T, Demchok JA, Eley G, Ferguson M, Fielding P, Schaefer C, Sheth M, Yang L, Guyer MS, Ozenberger BA, Palchik JD, Peterson J, Sofia HJ, Thomson E, Cancer Genome Atlas Network
Comprehensive molecular characterization of human colon and rectal cancer.
Nature 487: 330-7 (2012)
PM ID: 22810696 PMC3401966 NIHMS379461
323: Chang JS, Ocvirk S, Berger E, Kisling S, Binder U, Skerra A, Lee AS, Haller D
Endoplasmic reticulum stress response promotes cytotoxic phenotype of CD8αβ+ intraepithelial lymphocytes in a mouse model for Crohn's disease-like ileitis.
J Immunol 189: 1510-20 (2012)
PM ID: 22753943
324: Nguyen TJ, Costa MA, Vidar EN, Shahabi A, Peric M, Hernandez AM, Chan LS, Sener SF, Wong AK
Effect of immediate reconstruction on postmastectomy surgical site infection.
Ann Surg 256: 326-33 (2012)
PM ID: 22791106
325: Limsui D, Vierkant RA, Tillmans LS, Wang AH, Weisenberger DJ, Laird PW, Lynch CF, Anderson KE, French AJ, Haile RW, Harnack LJ, Potter JD, Slager SL, Smyrk TC, Thibodeau SN, Cerhan JR, Limburg PJ
Postmenopausal hormone therapy and colorectal cancer risk by molecularly defined subtypes among older women.
Gut 61: 1299-305 (2012)
PM ID: 22027477 PMC3584677 NIHMS441004
326: Kim K, Jeong KW, Kim H, Choi J, Lu W, Stallcup MR, An W
Functional interplay between p53 acetylation and H1.2 phosphorylation in p53-regulated transcription.
Oncogene 31: 4290-301 (2012)
PM ID: 22249259 PMC3330162 NIHMS341053
327: Farnham PJ
Thematic minireview series on results from the ENCODE Project: Integrative global analyses of regulatory regions in the human genome.
J Biol Chem 287: 30885-7 (2012)
PM ID: 22451669 PMC3438920
328: Breton CV, Salam MT, Wang X, Byun HM, Siegmund KD, Gilliland FD
Particulate matter, DNA methylation in nitric oxide synthase, and childhood respiratory disease.
Environ Health Perspect 120: 1320-6 (2012)
PM ID: 22591701 PMC3440108
329: Lan X, Witt H, Katsumura K, Ye Z, Wang Q, Bresnick EH, Farnham PJ, Jin VX
Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages.
Nucleic Acids Res 40: 7690-704 (2012)
PM ID: 22675074 PMC3439894
330: Hammerman PS, Lawrence MS, Voet D, Jing R, Cibulskis K, Sivachenko A, Stojanov P, McKenna A, Lander ES, Gabriel S, Getz G, Sougnez C, Imielinski M, Helman E, Hernandez B, Pho NH, Meyerson M, Chu A, Chun HJ, Mungall AJ, Pleasance E, Robertson A, Sipahimalani P, Stoll D, Balasundaram M, Birol I, Butterfield YS, Chuah E, Coope RJ, Corbett R, Dhalla N, Guin R, He A, Hirst C, Hirst M, Holt RA, Lee D, Li HI, Mayo M, Moore RA, Mungall K, Nip KM, Olshen A, Schein JE, Slobodan JR, Tam A, Thiessen N, Varhol R, Zeng T, Zhao Y, Jones SJ, Marra MA, Saksena G, Cherniack AD, Schumacher SE, Tabak B, Carter SL, Pho NH, Nguyen H, Onofrio RC, Crenshaw A, Ardlie K, Beroukhim R, Winckler W, Hammerman PS, Getz G, Meyerson M, Protopopov A, Zhang J, Hadjipanayis A, Lee S, Xi R, Yang L, Ren X, Zhang H, Shukla S, Chen PC, Haseley P, Lee E, Chin L, Park PJ, Kucherlapati R, Socci ND, Liang Y, Schultz N, Borsu L, Lash AE, Viale A, Sander C, Ladanyi M, Auman T, Hoadley KA, Wilkerson MD, Shi Y, Liquori C, Meng S, Li L, Turman YJ, Topal MD, Tan D, Waring S, Buda E, Walsh J, Jones CD, Mieczkowski PA, Singh D, Wu J, Gulabani A, Dolina P, Bodenheimer T, Hoyle AP, Simons JV, Soloway MG, Mose LE, Jefferys SR, Balu S, O'Connor BD, Prins JF, Liu J, Chiang DY, Hayes D, Perou CM, Cope L, Danilova L, Weisenberger DJ, Maglinte DT, Pan F, Van Den Berg DJ, Triche T, Herman JG, Baylin SB, Laird PW, Getz G, Noble M, Voet D, Saksena G, Gehlenborg N, DiCara D, Zhang J, Zhang H, Wu CJ, Liu SY, Lawrence MS, Zou L, Sivachenko A, Lin P, Stojanov P, Jing R, Cho J, Nazaire MD, Robinson J, Thorvaldsdottir H, Mesirov J, Park PJ, Chin L, Schultz N, Sinha R, Ciriello G, Cerami E, Gross B, Jacobsen A, Gao J, Aksoy B, Weinhold N, Ramirez R, Taylor BS, Antipin Y, Reva B, Shen R, Mo Q, Seshan V, Paik PK, Ladanyi M, Sander C, Akbani R, Zhang N, Broom BM, Casasent T, Unruh A, Wakefield C, Cason R, Baggerly KA, Weinstein JN, Haussler D, Benz CC, Stuart JM, Zhu J, Szeto C, Scott GK, Yau C, Ng S, Goldstein T, Waltman P, Sokolov A, Ellrott K, Collisson EA, Zerbino D, Wilks C, Ma S, Craft B, Wilkerson MD, Auman J, Hoadley KA, Du Y, Cabanski C, Walter V, Singh D, Wu J, Gulabani A, Bodenheimer T, Hoyle AP, Simons JV, Soloway MG, Mose LE, Jefferys SR, Balu S, Marron J, Liu Y, Wang K, Liu J, Prins JF, Hayes D, Perou CM, Creighton CJ, Zhang Y, Travis WD, Rekhtman N, Yi J, Aubry MC, Cheney R, Dacic S, Flieder D, Funkhouser W, Illei P, Myers J, Tsao MS, Penny R, Mallery D, Shelton T, Hatfield M, Morris S, Yena P, Shelton C, Sherman M, Paulauskis J, Meyerson M, Baylin SB, Govindan R, Akbani R, Azodo I, Beer D, Bose R, Byers LA, Carbone D, Chang LW, Chiang D, Chu A, Chun E, Collisson E, Cope L, Creighton CJ, Danilova L, Ding L, Getz G, Hammerman PS, Hayes D, Hernandez B, Herman JG, Heymach J, Ida C, Imielinski M, Johnson B, Jurisica I, Kaufman J, Kosari F, Kucherlapati R, Kwiatkowski D, Ladanyi M, Lawrence MS, Maher CA, Mungall A, Ng S, Pao W, Peifer M, Penny R, Robertson G, Rusch V, Sander C, Schultz N, Shen R, Siegfried J, Sinha R, Sivachenko A, Sougnez C, Stoll D, Stuart J, Thomas RK, Tomaszek S, Tsao MS, Travis WD, Vaske C, Weinstein JN, Weisenberger D, Wheeler D, Wigle DA, Wilkerson MD, Wilks C, Yang P, Zhang JJ, Jensen MA, Sfeir R, Kahn AB, Chu AL, Kothiyal P, Wang Z, Snyder EE, Pontius J, Pihl TD, Ayala B, Backus M, Walton J, Baboud J, Berton DL, Nicholls MC, Srinivasan D, Raman R, Girshik S, Kigonya PA, Alonso S, Sanbhadti RN, Barletta SP, Greene JM, Pot DA, Tsao MS, Bandarchi-Chamkhaleh B, Boyd J, Weaver J, Wigle DA, Azodo IA, Tomaszek SC, Aubry MC, Ida CM, Yang P, Kosari F, Brock MV, Rodgers K, Rutledge M, Brown T, Lee B, Shin J, Trusty D, Dhir R, Siegfried JM, Potapova O, Fedosenko KV, Nemirovich-Danchenko E, Rusch V, Zakowski M, Iacocca MV, Brown J, Rabeno B, Czerwinski C, Petrelli N, Fan Z, Todaro N, Eckman J, Myers J, Rathmell W, Thorne LB, Huang M, Boice L, Hill A, Penny R, Mallery D, Curley E, Shelton C, Yena P, Morrison C, Gaudioso C, Bartlett JM, Kodeeswaran S, Zanke B, Sekhon H, David K, Juhl H, Van Le X, Kohl B, Thorp R, Nguyen VT, Nguyen VB, Sussman H, Phu BD, Hajek R, Nguyen PH, Khan KZ, Muley T, Shaw KR, Sheth M, Yang L, Buetow K, Davidsen T, Demchok JA, Eley G, Ferguson M, Dillon LA, Schaefer C, Guyer MS, Ozenberger BA, Palchik JD, Peterson J, Sofia HJ, Thomson E, Cancer Genome Atlas Research Network
Comprehensive genomic characterization of squamous cell lung cancers.
Nature 489: 519-25 (2012)
PM ID: 22960745 PMC3466113 NIHMS392594
331: Li J, Jiang TX, Hughes MW, Wu P, Yu J, Widelitz RB, Fan G, Chuong CM
Progressive Alopecia Reveals Decreasing Stem Cell Activation Probability during Aging of Mice with Epidermal Deletion of DNA Methyltransferase 1.
J Invest Dermatol : (2012)
PM ID: 22992801
332: Pratt MR
Small-molecule reprogramming of cancer metabolism.
Chem Biol 19: 1084-5 (2012)
PM ID: 22999876
333: Landt SG, Marinov GK, Kundaje A, Kheradpour P, Pauli F, Batzoglou S, Bernstein BE, Bickel P, Brown JB, Cayting P, Chen Y, Desalvo G, Epstein C, Fisher-Aylor KI, Euskirchen G, Gerstein M, Gertz J, Hartemink AJ, Hoffman MM, Iyer VR, Jung YL, Karmakar S, Kellis M, Kharchenko PV, Li Q, Liu T, Liu XS, Ma L, Milosavljevic A, Myers RM, Park PJ, Pazin MJ, Perry MD, Raha D, Reddy TE, Rozowsky J, Shoresh N, Sidow A, Slattery M, Stamatoyannopoulos JA, Tolstorukov MY, White KP, Xi S, Farnham PJ, Lieb JD, Wold BJ, Snyder M
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia.
Genome Res 22: 1813-31 (2012)
PM ID: 22955991 PMC3431496
334: Gerstein MB, Kundaje A, Hariharan M, Landt SG, Yan KK, Cheng C, Mu XJ, Khurana E, Rozowsky J, Alexander R, Min R, Alves P, Abyzov A, Addleman N, Bhardwaj N, Boyle AP, Cayting P, Charos A, Chen DZ, Cheng Y, Clarke D, Eastman C, Euskirchen G, Frietze S, Fu Y, Gertz J, Grubert F, Harmanci A, Jain P, Kasowski M, Lacroute P, Leng J, Lian J, Monahan H, O'Geen H, Ouyang Z, Partridge EC, Patacsil D, Pauli F, Raha D, Ramirez L, Reddy TE, Reed B, Shi M, Slifer T, Wang J, Wu L, Yang X, Yip KY, Zilberman-Schapira G, Batzoglou S, Sidow A, Farnham PJ, Myers RM, Weissman SM, Snyder M
Architecture of the human regulatory network derived from ENCODE data.
Nature 489: 91-100 (2012)
PM ID: 22955619
335: Dunham I, Kundaje A, Aldred SF, Collins PJ, Davis CA, Doyle F, Epstein CB, Frietze S, Harrow J, Kaul R, Khatun J, Lajoie BR, Landt SG, Lee BK, Pauli F, Rosenbloom KR, Sabo P, Safi A, Sanyal A, Shoresh N, Simon JM, Song L, Trinklein ND, Altshuler RC, Birney E, Brown JB, Cheng C, Djebali S, Dong X, Dunham I, Ernst J, Furey TS, Gerstein M, Giardine B, Greven M, Hardison RC, Harris RS, Herrero J, Hoffman MM, Iyer S, Kellis M, Khatun J, Kheradpour P, Kundaje A, Lassmann T, Li Q, Lin X, Marinov GK, Merkel A, Mortazavi A, Parker SC, Reddy TE, Rozowsky J, Schlesinger F, Thurman RE, Wang J, Ward LD, Whitfield TW, Wilder SP, Wu W, Xi HS, Yip KY, Zhuang J, Pazin MJ, Lowdon RF, Dillon LA, Adams LB, Kelly CJ, Zhang J, Wexler JR, Green ED, Good PJ, Feingold EA, Bernstein BE, Birney E, Crawford GE, Dekker J, Elnitski L, Farnham PJ, Gerstein M, Giddings MC, Gingeras TR, Green ED, Guigó R, Hardison RC, Hubbard TJ, Kellis M, Kent W, Lieb JD, Margulies EH, Myers RM, Snyder M, Stamatoyannopoulos JA, Tenenbaum SA, Weng Z, White KP, Wold B, Khatun J, Yu Y, Wrobel J, Risk BA, Gunawardena HP, Kuiper HC, Maier CW, Xie L, Chen X, Giddings MC, Bernstein BE, Epstein CB, Shoresh N, Ernst J, Kheradpour P, Mikkelsen TS, Gillespie S, Goren A, Ram O, Zhang X, Wang L, Issner R, Coyne MJ, Durham T, Ku M, Truong T, Ward LD, Altshuler RC, Eaton ML, Kellis M, Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi A, Tanzer A, Lagarde J, Lin W, Schlesinger F, Xue C, Marinov GK, Khatun J, Williams BA, Zaleski C, Rozowsky J, Röder M, Kokocinski F, Abdelhamid RF, Alioto T, Antoshechkin I, Baer MT, Batut P, Bell I, Bell K, Chakrabortty S, Chen X, Chrast J, Curado J, Derrien T, Drenkow J, Dumais E, Dumais J, Duttagupta R, Fastuca M, Fejes-Toth K, Ferreira P, Foissac S, Fullwood MJ, Gao H, Gonzalez D, Gordon A, Gunawardena HP, Howald C, Jha S, Johnson R, Kapranov P, King B, Kingswood C, Li G, Luo OJ, Park E, Preall JB, Presaud K, Ribeca P, Risk BA, Robyr D, Ruan X, Sammeth M, Sandhu KS, Schaeffer L, See LH, Shahab A, Skancke J, Suzuki AM, Takahashi H, Tilgner H, Trout D, Walters N, Wang H, Wrobel J, Yu Y, Hayashizaki Y, Harrow J, Gerstein M, Hubbard TJ, Reymond A, Antonarakis SE, Hannon GJ, Giddings MC, Ruan Y, Wold B, Carninci P, Guigó R, Gingeras TR, Rosenbloom KR, Sloan CA, Learned K, Malladi VS, Wong MC, Barber GP, Cline MS, Dreszer TR, Heitner SG, Karolchik D, Kent W, Kirkup VM, Meyer LR, Long JC, Maddren M, Raney BJ, Furey TS, Song L, Grasfeder LL, Giresi PG, Lee BK, Battenhouse A, Sheffield NC, Simon JM, Showers KA, Safi A, London D, Bhinge AA, Shestak C, Schaner MR, Kim SK, Zhang ZZ, Mieczkowski PA, Mieczkowska JO, Liu Z, McDaniell RM, Ni Y, Rashid NU, Kim MJ, Adar S, Zhang Z, Wang T, Winter D, Keefe D, Birney E, Iyer VR, Lieb JD, Crawford GE, Li G, Sandhu KS, Zheng M, Wang P, Luo OJ, Shahab A, Fullwood MJ, Ruan X, Ruan Y, Myers RM, Pauli F, Williams BA, Gertz J, Marinov GK, Reddy TE, Vielmetter J, Partridge E, Trout D, Varley KE, Gasper C, Bansal A, Pepke S, Jain P, Amrhein H, Bowling KM, Anaya M, Cross MK, King B, Muratet MA, Antoshechkin I, Newberry KM, McCue K, Nesmith AS, Fisher-Aylor KI, Pusey B, Desalvo G, Parker SL, Balasubramanian S, Davis NS, Meadows SK, Eggleston T, Gunter C, Newberry J, Levy SE, Absher DM, Mortazavi A, Wong WH, Wold B, Blow MJ, Visel A, Pennachio LA, Elnitski L, Margulies EH, Parker SC, Petrykowska HM, Abyzov A, Aken B, Barrell D, Barson G, Berry A, Bignell A, Boychenko V, Bussotti G, Chrast J, Davidson C, Derrien T, Despacio-Reyes G, Diekhans M, Ezkurdia I, Frankish A, Gilbert J, Gonzalez JM, Griffiths E, Harte R, Hendrix DA, Howald C, Hunt T, Jungreis I, Kay M, Khurana E, Kokocinski F, Leng J, Lin MF, Loveland J, Lu Z, Manthravadi D, Mariotti M, Mudge J, Mukherjee G, Notredame C, Pei B, Rodriguez JM, Saunders G, Sboner A, Searle S, Sisu C, Snow C, Steward C, Tanzer A, Tapanari E, Tress ML, van Baren MJ, Walters N, Washietl S, Wilming L, Zadissa A, Zhang Z, Brent M, Haussler D, Kellis M, Valencia A, Gerstein M, Reymond A, Guigó R, Harrow J, Hubbard TJ, Landt SG, Frietze S, Abyzov A, Addleman N, Alexander RP, Auerbach RK, Balasubramanian S, Bettinger K, Bhardwaj N, Boyle AP, Cao AR, Cayting P, Charos A, Cheng Y, Cheng C, Eastman C, Euskirchen G, Fleming JD, Grubert F, Habegger L, Hariharan M, Harmanci A, Iyengar S, Jin VX, Karczewski KJ, Kasowski M, Lacroute P, Lam H, Lamarre-Vincent N, Leng J, Lian J, Lindahl-Allen M, Min R, Miotto B, Monahan H, Moqtaderi Z, Mu XJ, O'Geen H, Ouyang Z, Patacsil D, Pei B, Raha D, Ramirez L, Reed B, Rozowsky J, Sboner A, Shi M, Sisu C, Slifer T, Witt H, Wu L, Xu X, Yan KK, Yang X, Yip KY, Zhang Z, Struhl K, Weissman SM, Gerstein M, Farnham PJ, Snyder M, Tenenbaum SA, Penalva LO, Doyle F, Karmakar S, Landt SG, Bhanvadia RR, Choudhury A, Domanus M, Ma L, Moran J, Patacsil D, Slifer T, Victorsen A, Yang X, Snyder M, Auer T, Centanin L, Eichenlaub M, Gruhl F, Heermann S, Hoeckendorf B, Inoue D, Kellner T, Kirchmaier S, Mueller C, Reinhardt R, Schertel L, Schneider S, Sinn R, Wittbrodt B, Wittbrodt J, Weng Z, Whitfield TW, Wang J, Collins PJ, Aldred SF, Trinklein ND, Partridge EC, Myers RM, Dekker J, Jain G, Lajoie BR, Sanyal A, Balasundaram G, Bates DL, Byron R, Canfield TK, Diegel MJ, Dunn D, Ebersol AK, Frum T, Garg K, Gist E, Hansen R, Boatman L, Haugen E, Humbert R, Jain G, Johnson AK, Johnson EM, Kutyavin TV, Lajoie BR, Lee K, Lotakis D, Maurano MT, Neph SJ, Neri FV, Nguyen ED, Qu H, Reynolds AP, Roach V, Rynes E, Sabo P, Sanchez ME, Sandstrom RS, Sanyal A, Shafer AO, Stergachis AB, Thomas S, Thurman RE, Vernot B, Vierstra J, Vong S, Wang H, Weaver MA, Yan Y, Zhang M, Akey JM, Bender M, Dorschner MO, Groudine M, MacCoss MJ, Navas P, Stamatoyannopoulos G, Kaul R, Dekker J, Stamatoyannopoulos JA, Dunham I, Beal K, Brazma A, Flicek P, Herrero J, Johnson N, Keefe D, Lukk M, Luscombe NM, Sobral D, Vaquerizas JM, Wilder SP, Batzoglou S, Sidow A, Hussami N, Kyriazopoulou-Panagiotopoulou S, Libbrecht MW, Schaub MA, Kundaje A, Hardison RC, Miller W, Giardine B, Harris RS, Wu W, Bickel PJ, Banfai B, Boley NP, Brown JB, Huang H, Li Q, Li JJ, Noble WS, Bilmes JA, Buske OJ, Hoffman MM, Sahu AD, Kharchenko PV, Park PJ, Baker D, Taylor J, Weng Z, Iyer S, Dong X, Greven M, Lin X, Wang J, Xi HS, Zhuang J, Gerstein M, Alexander RP, Balasubramanian S, Cheng C, Harmanci A, Lochovsky L, Min R, Mu XJ, Rozowsky J, Yan KK, Yip KY, Birney E, ENCODE Project Consortium , Bernstein BE, Birney E, Dunham I, Green ED, Gunter C, Snyder M
An integrated encyclopedia of DNA elements in the human genome.
Nature 489: 57-74 (2012)
PM ID: 22955616 PMC3439153 NIHMS381381
336: Lan X, Farnham PJ, Jin VX
Uncovering transcription factor modules using one- and three-dimensional analyses.
J Biol Chem 287: 30914-21 (2012)
PM ID: 22952238 PMC3438924
337: Kage H, Borok Z
EMT and interstitial lung disease: a mysterious relationship.
Curr Opin Pulm Med 18: 517-23 (2012)
PM ID: 22854509 PMC3914631 NIHMS548555
338: Cox SG, Kim H, Garnett AT, Medeiros DM, An W, Crump JG
An essential role of variant histone H3.3 for ectomesenchyme potential of the cranial neural crest.
PLoS Genet 8: e1002938 (2012)
PM ID: 23028350 PMC3447937
339: Coetzee SG, Rhie SK, Berman BP, Coetzee GA, Noushmehr H
FunciSNP: an R/bioconductor tool integrating functional non-coding data sets with genetic association studies to identify candidate regulatory SNPs.
Nucleic Acids Res 40: e139 (2012)
PM ID: 22684628 PMC3467035
340: Cortessis VK, Thomas DC, Levine AJ, Breton CV, Mack TM, Siegmund KD, Haile RW, Laird PW
Environmental epigenetics: prospects for studying epigenetic mediation of exposure-response relationships.
Hum Genet 131: 1565-89 (2012)
PM ID: 22740325 PMC3432200
341: Trotta AP, Need EF, Butler LM, Selth LA, O'Loughlin MA, Coetzee GA, Tilley WD, Buchanan G
Subdomain structure of the co-chaperone SGTA and activity of its androgen receptor client.
J Mol Endocrinol 49: 57-68 (2012)
PM ID: 22693264
342: Yan HX, Wu HP, Ashton C, Tong C, Ying QL
Rats deficient for p53 are susceptible to spontaneous and carcinogen-induced tumorigenesis.
Carcinogenesis 33: 2001-5 (2012)
PM ID: 22791818 PMC3499043
343: Gundimeda U, McNeill TH, Elhiani AA, Schiffman JE, Hinton DR, Gopalakrishna R
Green tea polyphenols precondition against cell death induced by oxygen-glucose deprivation via stimulation of laminin receptor, generation of reactive oxygen species, and activation of protein kinase Cε.
J Biol Chem 287: 34694-708 (2012)
PM ID: 22879598 PMC3464573
344: Zhang S, Liu CC, Li W, Shen H, Laird PW, Zhou XJ
Discovery of multi-dimensional modules by integrative analysis of cancer genomic data.
Nucleic Acids Res 40: 9379-91 (2012)
PM ID: 22879375 PMC3479191
345: Koboldt DC, Fulton RS, McLellan MD, Schmidt H, Kalicki-Veizer J, McMichael JF, Fulton LL, Dooling DJ, Ding L, Mardis ER, Wilson RK, Ally A, Balasundaram M, Butterfield YS, Carlsen R, Carter C, Chu A, Chuah E, Chun HJ, Coope RJ, Dhalla N, Guin R, Hirst C, Hirst M, Holt RA, Lee D, Li HI, Mayo M, Moore RA, Mungall AJ, Pleasance E, Robertson A, Schein JE, Shafiei A, Sipahimalani P, Slobodan JR, Stoll D, Tam A, Thiessen N, Varhol RJ, Wye N, Zeng T, Zhao Y, Birol I, Jones SJ, Marra MA, Cherniack AD, Saksena G, Onofrio RC, Pho NH, Carter SL, Schumacher SE, Tabak B, Hernandez B, Gentry J, Nguyen H, Crenshaw A, Ardlie K, Beroukhim R, Winckler W, Getz G, Gabriel SB, Meyerson M, Chin L, Park PJ, Kucherlapati R, Hoadley KA, Auman J, Fan C, Turman YJ, Shi Y, Li L, Topal MD, He X, Chao HH, Prat A, Silva GO, Iglesia MD, Zhao W, Usary J, Berg JS, Adams M, Booker J, Wu J, Gulabani A, Bodenheimer T, Hoyle AP, Simons JV, Soloway MG, Mose LE, Jefferys SR, Balu S, Parker JS, Hayes D, Perou CM, Malik S, Mahurkar S, Shen H, Weisenberger DJ, Triche T, Lai PH, Bootwalla MS, Maglinte DT, Berman BP, Van Den Berg DJ, Baylin SB, Laird PW, Creighton CJ, Donehower LA, Getz G, Noble M, Voet D, Saksena G, Gehlenborg N, DiCara D, Zhang J, Zhang H, Wu CJ, Liu SY, Lawrence MS, Zou L, Sivachenko A, Lin P, Stojanov P, Jing R, Cho J, Sinha R, Park RW, Nazaire MD, Robinson J, Thorvaldsdottir H, Mesirov J, Park PJ, Chin L, Reynolds S, Kreisberg RB, Bernard B, Bressler R, Erkkila T, Lin J, Thorsson V, Zhang W, Shmulevich I, Ciriello G, Weinhold N, Schultz N, Gao J, Cerami E, Gross B, Jacobsen A, Sinha R, Aksoy B, Antipin Y, Reva B, Shen R, Taylor BS, Ladanyi M, Sander C, Anur P, Spellman PT, Lu Y, Liu W, Verhaak RR, Mills GB, Akbani R, Zhang N, Broom BM, Casasent TD, Wakefield C, Unruh AK, Baggerly K, Coombes K, Weinstein JN, Haussler D, Benz CC, Stuart JM, Benz SC, Zhu J, Szeto CC, Scott GK, Yau C, Paull EO, Carlin D, Wong C, Sokolov A, Thusberg J, Mooney S, Ng S, Goldstein TC, Ellrott K, Grifford M, Wilks C, Ma S, Craft B, Yan C, Hu Y, Meerzaman D, Gastier-Foster JM, Bowen J, Ramirez NC, Black AD, Pyatt RE, White P, Zmuda EJ, Frick J, Lichtenberg TM, Brookens R, George MM, Gerken MA, Harper HA, Leraas KM, Wise LJ, Tabler TR, McAllister C, Barr T, Hart-Kothari M, Tarvin K, Saller C, Sandusky G, Mitchell C, Iacocca MV, Brown J, Rabeno B, Czerwinski C, Petrelli N, Dolzhansky O, Abramov M, Voronina O, Potapova O, Marks JR, Suchorska WM, Murawa D, Kycler W, Ibbs M, Korski K, Spychała A, Murawa P, Brzeziński JJ, Perz H, Łaźniak R, Teresiak M, Tatka H, Leporowska E, Bogusz-Czerniewicz M, Malicki J, Mackiewicz A, Wiznerowicz M, Le XV, Kohl B, Nguyen VT, Thorp R, Nguyen VB, Sussman H, Bui DP, Hajek R, Nguyen PH, Tran VT, Huynh QT, Khan KZ, Penny R, Mallery D, Curley E, Shelton C, Yena P, Ingle JN, Couch FJ, Lingle WL, King TA, Gonzalez-Angulo AM, Mills GB, Dyer MD, Liu S, Meng X, Patangan M, Waldman F, Stöppler H, Rathmell W, Thorne L, Huang M, Boice L, Hill A, Morrison C, Gaudioso C, Bshara W, Daily K, Egea SC, Pegram M, Gomez-Fernandez C, Dhir R, Bhargava R, Brufsky A, Shriver CD, Hooke JA, Campbell JL, Mural RJ, Hu H, Somiari S, Larson C, Deyarmin B, Kvecher L, Kovatich AJ, Ellis MJ, King TA, Hu H, Couch FJ, Mural RJ, Stricker T, White K, Olopade O, Ingle JN, Luo C, Chen Y, Marks JR, Waldman F, Wiznerowicz M, Bose R, Chang LW, Beck AH, Gonzalez-Angulo AM, Pihl T, Jensen M, Sfeir R, Kahn A, Chu A, Kothiyal P, Wang Z, Snyder E, Pontius J, Ayala B, Backus M, Walton J, Baboud J, Berton D, Nicholls M, Srinivasan D, Raman R, Girshik S, Kigonya P, Alonso S, Sanbhadti R, Barletta S, Pot D, Sheth M, Demchok JA, Shaw KR, Yang L, Eley G, Ferguson ML, Tarnuzzer RW, Zhang J, Dillon LA, Buetow K, Fielding P, Ozenberger BA, Guyer MS, Sofia HJ, Palchik JD, Cancer Genome Atlas Network
Comprehensive molecular portraits of human breast tumours.
Nature 490: 61-70 (2012)
PM ID: 23000897 PMC3465532 NIHMS393293
346: Xu S, Butkevich AN, Yamada R, Zhou Y, Debnath B, Duncan R, Zandi E, Petasis NA, Neamati N
Discovery of an orally active small-molecule irreversible inhibitor of protein disulfide isomerase for ovarian cancer treatment.
Proc Natl Acad Sci U S A 109: 16348-53 (2012)
PM ID: 22988091 PMC3479552
347: Tewari AK, Yardimci GG, Shibata Y, Sheffield NC, Song L, Taylor BS, Georgiev SG, Coetzee GA, Ohler U, Furey TS, Crawford GE, Febbo PG
Chromatin accessibility reveals insights into androgen receptor activation and transcriptional specificity.
Genome Biol 13: R88 (2012)
PM ID: 23034120 PMC3491416
348: Wang XM, Yik WY, Zhang P, Lu W, Dranchak PK, Shibata D, Steinberg SJ, Hacia JG
The gene expression profiles of induced pluripotent stem cells from individuals with childhood cerebral adrenoleukodystrophy are consistent with proposed mechanisms of pathogenesis.
Stem Cell Res Ther 3: 39 (2012)
PM ID: 23036268 PMC3580430
349: Ishii M, Arias AC, Liu L, Chen YB, Bronner ME, Maxson RE
A stable cranial neural crest cell line from mouse.
Stem Cells Dev 21: 3069-80 (2012)
PM ID: 22889333 PMC3495126
350: Tiozzo C, Carraro G, Al Alam D, Baptista S, Danopoulos S, Li A, Lavarreda-Pearce M, Li C, De Langhe S, Chan B, Borok Z, Bellusci S, Minoo P
Mesodermal Pten inactivation leads to alveolar capillary dysplasia- like phenotype.
J Clin Invest 122: 3862-72 (2012)
PM ID: 23023706 PMC3484434
351: Chen Y, Bates DL, Dey R, Chen PH, Machado AC, Laird-Offringa IA, Rohs R, Chen L
DNA binding by GATA transcription factor suggests mechanisms of DNA looping and long-range gene regulation.
Cell Rep 2: 1197-206 (2012)
PM ID: 23142663 PMC3978094 NIHMS417448
352: Bittencourt D, Wu DY, Jeong KW, Gerke DS, Herviou L, Ianculescu I, Chodankar R, Siegmund KD, Stallcup MR
G9a functions as a molecular scaffold for assembly of transcriptional coactivators on a subset of glucocorticoid receptor target genes.
Proc Natl Acad Sci U S A 109: 19673-8 (2012)
PM ID: 23151507 PMC3511704
353: Nielsen CB, Younesy H, O'Geen H, Xu X, Jackson AR, Milosavljevic A, Wang T, Costello JF, Hirst M, Farnham PJ, Jones SJ
Spark: a navigational paradigm for genomic data exploration.
Genome Res 22: 2262-9 (2012)
PM ID: 22960372 PMC3483555
354: Pfaffenbach KT, Pong M, Morgan TE, Wang H, Ott K, Zhou B, Longo VD, Lee AS
GRP78/BiP is a novel downstream target of IGF-1 receptor mediated signaling.
J Cell Physiol 227: 3803-11 (2012)
PM ID: 22422508 PMC3421054 NIHMS364068
355: Li J, Jiang TX, Hughes MW, Wu P, Yu J, Widelitz RB, Fan G, Chuong CM
Progressive alopecia reveals decreasing stem cell activation probability during aging of mice with epidermal deletion of DNA methyltransferase 1.
J Invest Dermatol 132: 2681-90 (2012)
PM ID: 22763785 PMC3465630 NIHMS378674
356: Yue Z, Jiang TX, Wu P, Widelitz RB, Chuong CM
Sprouty/FGF signaling regulates the proximal-distal feather morphology and the size of dermal papillae.
Dev Biol 372: 45-54 (2012)
PM ID: 23000358 PMC3586415 NIHMS408974
357: Kelly TK, Liu Y, Lay FD, Liang G, Berman BP, Jones PA
Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules.
Genome Res 22: 2497-506 (2012)
PM ID: 22960375 PMC3514679
358: Siddiq A, Couch FJ, Chen GK, Lindström S, Eccles D, Millikan RC, Michailidou K, Stram DO, Beckmann L, Rhie SK, Ambrosone CB, Aittomäki K, Amiano P, Apicella C, Australian Breast Cancer Tissue Bank Investigators , Baglietto L, Bandera EV, Beckmann MW, Berg CD, Bernstein L, Blomqvist C, Brauch H, Brinton L, Bui QM, Buring JE, Buys SS, Campa D, Carpenter JE, Chasman DI, Chang-Claude J, Chen C, Clavel-Chapelon F, Cox A, Cross SS, Czene K, Deming SL, Diasio RB, Diver WR, Dunning AM, Durcan L, Ekici AB, Fasching PA, Familial Breast Cancer Study , Feigelson HS, Fejerman L, Figueroa JD, Fletcher O, Flesch-Janys D, Gaudet MM, GENICA Consortium , Gerty SM, Rodriguez-Gil JL, Giles GG, van Gils CH, Godwin AK, Graham N, Greco D, Hall P, Hankinson SE, Hartmann A, Hein R, Heinz J, Hoover RN, Hopper JL, Hu JJ, Huntsman S, Ingles SA, Irwanto A, Isaacs C, Jacobs KB, John EM, Justenhoven C, Kaaks R, Kolonel LN, Coetzee GA, Lathrop M, Le Marchand L, Lee AM, Lee IM, Lesnick T, Lichtner P, Liu J, Lund E, Makalic E, Martin NG, McLean CA, Meijers-Heijboer H, Meindl A, Miron P, Monroe KR, Montgomery GW, Müller-Myhsok B, Nickels S, Nyante SJ, Olswold C, Overvad K, Palli D, Park DJ, Palmer JR, Pathak H, Peto J, Pharoah P, Rahman N, Rivadeneira F, Schmidt DF, Schmutzler RK, Slager S, Southey MC, Stevens KN, Sinn HP, Press MF, Ross E, Riboli E, Ridker PM, Schumacher FR, Severi G, Dos Santos Silva I, Stone J, Sund M, Tapper WJ, Thun MJ, Travis RC, Turnbull C, Uitterlinden AG, Waisfisz Q, Wang X, Wang Z, Weaver J, Schulz-Wendtland R, Wilkens LR, Van Den Berg D, Zheng W, Ziegler RG, Ziv E, Nevanlinna H, Easton DF, Hunter DJ, Henderson BE, Chanock SJ, Garcia-Closas M, Kraft P, Haiman CA, Vachon CM
A meta-analysis of genome-wide association studies of breast cancer identifies two novel susceptibility loci at 6q14 and 20q11.
Hum Mol Genet 21: 5373-84 (2012)
PM ID: 22976474 PMC3510753
359: Jones PA, Baylin SB, Bernstein BE, Clark S, Greally JM, Laird PW, Schübeler D, Ushijima T, Amati B, Beck S, Campbell RM, Carpten JD, Chinnaiyan AM, Costello JF, Dhanak D, Ecker JR, Esteller M, Helin K, Herman JG, Issa JP, Jackson-Grusby L, Kim YJ, Licht JD, Liu XS, Ng HH, Polyak K, Reinberg D, Richon VM, Stunnenberg H, Tycko B, Wang J, Beck S, Bernstein BE, Campbell RM, Costello JF, Dhanak D, Ecker JR, Greally JM, Issa JP, Laird PW, Polyak K, Tycko B, Jones PA, AACR Cancer Epigenome Task Force
A blueprint for an international cancer epigenome consortium. A report from the AACR Cancer Epigenome Task Force.
Cancer Res 72: 6319-24 (2012)
PM ID: 23188507
360: Marotta NP, Cherwien CA, Abeywardana T, Pratt MR
O-GlcNAc modification prevents peptide-dependent acceleration of α-synuclein aggregation.
Chembiochem 13: 2665-70 (2012)
PM ID: 23143740
361: Han A, Bandyopadhyay B, Jayaprakash P, Lua I, Sahu D, Chen M, Woodley DT, Li W
The anti-motility signaling mechanism of TGFβ3 that controls cell traffic during skin wound healing.
Biol Open 1: 1169-77 (2012)
PM ID: 23259050 PMC3522877
362: Andreu-Vieyra CV, Liang G
Nucleosome occupancy and gene regulation during tumorigenesis.
Adv Exp Med Biol 754: 109-34 (2013)
PM ID: 22956498
363: Wu H, Chen L, Zhang X, Zhou Q, Li JM, Berger S, Borok Z, Zhou B, Xiao Z, Yin H, Liu M, Wang Y, Jin J, Blackburn MR, Xia Y, Zhang W
Aqp5 is a new transcriptional target of Dot1a and a regulator of Aqp2.
PLoS One 8: e53342 (2013)
PM ID: 23326416 PMC3542343
364: Zaro BW, Hang HC, Pratt MR
Incorporation of unnatural sugars for the identification of glycoproteins.
Methods Mol Biol 951: 57-67 (2013)
PM ID: 23296524
365: Gao F, Shi L, Russin J, Zeng L, Chang X, He S, Chen TC, Giannotta SL, Weisenberger DJ, Zada G, Mack WJ, Wang K
DNA methylation in the malignant transformation of meningiomas.
PLoS One 8: e54114 (2013)
PM ID: 23349797 PMC3551961
366: Li W, Tsen F, Sahu D, Bhatia A, Chen M, Multhoff G, Woodley DT
Extracellular Hsp90 (eHsp90) as the actual target in clinical trials: intentionally or unintentionally.
Int Rev Cell Mol Biol 303: 203-35 (2013)
PM ID: 23445811 PMC4023563 NIHMS580669
367: Whiteman DC, Webb PM, Phil D, Green AC, Hayward NK, Parsons PG, Purdie DM, Smithers B, Gotley D, Clouston A, Brown I, Moore S, Harrap K, Sadkowski T, O'Brien S, Minehan E, Roffe D, O'Keefe S, Lipshut S, Connor G, Berry H, Walker F, Barnes T, Thomas J, Terry L, Connard M, Bowes L, Malt M, White J, Mosse C, Tait N, Bambach C, Biankan A, Brancatisano R, Coleman M, Cox M, Deane S, Falk GL, Gallagher J, Hollands M, Hugh T, Hunt D, Jorgensen J, Martin C, Richardson M, Smith G, Smith R, Storey D, Avramovic J, Croese J, D'Arcy J, Fairley S, Hansen J, Masson J, Nathanson L, O'Loughlin B, Rutherford L, Turner R, Windsor M, Bessell J, Devitt P, Jamieson G, Watson D, Blamey S, Boussioutas A, Cade R, Crosthwaite G, Faragher I, Gribbin J, Hebbard G, Kiroff G, Mann B, Millar B, O'Brien P, Thomas R, Wood S, Archer S, Faulkner K, Hamdorf J, Stuart-Harris R, Bowtell D, Gertig D, Green A, Defazio A, Webb P, Kirsten F, Rutovitz J, Clingan P, Glasgow A, Proietto A, Braye S, Otton G, Shannon J, Bonaventura T, Stewart J, Begbie S, Friedlander M, Bell D, Baron-Hay S, Ferrier A, Gard G, Nevell D, Pavlakis N, Valmadre S, Young B, Camaris C, Crouch R, Edwards L, Hacker N, Marsden D, Robertson G, Beale P, Beith J, Carter J, Dalrymple C, Houghton R, Russell P, Anderson L, Links M, Grygiel J, Hill J, Brand A, Byth K, Jaworski R, Harnett P, Sharma R, Wain G, Purdie D, Whiteman D, Ward B, Papadimos D, Crandon A, Cummings M, Horwood K, Obermair A, Perrin L, Wyld D, Nicklin J, Davy M, Oehler MK, Hall C, Dodd T, Healy T, Pittman K, Henderson D, Miller J, Pierdes J, Achan A, Blomfield P, Challis D, McIntosh R, Parker A, Brown B, Rome R, Allen D, Grant P, Hyde S, Laurie R, Robbie M, Healy D, Jobling T, Manolitsas T, McNealage J, Rogers P, Susil B, Sumithran E, Simpson I, Haviv I, Phillips K, Rischin D, Fox S, Johnson D, Lade S, Waring P, Loughrey M, O'Callaghan N, Murray B, Mileshkin L, Allan P, Billson V, Pyman J, Neesham D, Quinn M, Hamilton A, Underhill C, Bell R, Ng LF, Blum R, Ganju V, Hammond I, McCartney A, Stewart C, Leung Y, Buck M, Zeps N, Andrulis IL, Caldes T, Caligo MA, Sinilnikova O, Hansen TV, Rookus M, Hogervorst F, Jakubowska A, Lubinski J, Peock S, Chenevix-Trench G, Nathanson KL, Domchek S, Nevanlinna H, Offit K, Osorio A, Benitez J, Radice P, Singer CF, Schmutzler R, Godwin A, Blanco I, Lazaro C, Montagna M, Beattie MS, Antoniou AC, Easton DF, Couch FJ, Permuth-Wey J, Lawrenson K, Shen HC, Velkova A, Tyrer JP, Chen Z, Lin HY, Chen YA, Tsai YY, Qu X, Ramus SJ, Karevan R, Lee J, Lee N, Larson MC, Aben KK, Anton-Culver H, Antonenkova N, Antoniou AC, Armasu SM, Australian Cancer Study , Australian Ovarian Cancer Study , Bacot F, Baglietto L, Bandera EV, Barnholtz-Sloan J, Beckmann MW, Birrer MJ, Bloom G, Bogdanova N, Brinton LA, Brooks-Wilson A, Brown R, Butzow R, Cai Q, Campbell I, Chang-Claude J, Chanock S, Chenevix-Trench G, Cheng JQ, Cicek MS, Coetzee GA, Consortium of Investigators of Modifiers of BRCA1/2 , Cook LS, Couch FJ, Cramer DW, Cunningham JM, Dansonka-Mieszkowska A, Despierre E, Doherty JA, Dörk T, du Bois A, Dürst M, Easton DF, Eccles D, Edwards R, Ekici AB, Fasching PA, Fenstermacher DA, Flanagan JM, Garcia-Closas M, Gentry-Maharaj A, Giles GG, Glasspool RM, Gonzalez-Bosquet J, Goodman MT, Gore M, Górski B, Gronwald J, Hall P, Halle MK, Harter P, Heitz F, Hillemanns P, Hoatlin M, Høgdall CK, Høgdall E, Hosono S, Jakubowska A, Jensen A, Jim H, Kalli KR, Karlan BY, Kaye SB, Kelemen LE, Kiemeney LA, Kikkawa F, Konecny GE, Krakstad C, Kjaer SK, Kupryjanczyk J, Lambrechts D, Lambrechts S, Lancaster JM, Le ND, Leminen A, Levine DA, Liang D, Lim BK, Lin J, Lissowska J, Lu KH, Lubinski J, Lurie G, Massuger LF, Matsuo K, McGuire V, McLaughlin JR, Menon U, Modugno F, Moysich KB, Nakanishi T, Narod SA, Nedergaard L, Ness RB, Nevanlinna H, Nickels S, Noushmehr H, Odunsi K, Olson SH, Orlow I, Paul J, Pearce CL, Pejovic T, Pelttari LM, Pike MC, Poole EM, Raska P, Renner SP, Risch HA, Rodriguez-Rodriguez L, Rossing MA, Rudolph A, Runnebaum IB, Rzepecka IK, Salvesen HB, Schwaab I, Severi G, Shridhar V, Shu XO, Shvetsov YB, Sieh W, Song H, Southey MC, Spiewankiewicz B, Stram D, Sutphen R, Teo SH, Terry KL, Tessier DC, Thompson PJ, Tworoger SS, van Altena AM, Vergote I, Vierkant RA, Vincent D, Vitonis AF, Wang-Gohrke S, Palmieri Weber R, Wentzensen N, Whittemore AS, Wik E, Wilkens LR, Winterhoff B, Woo YL, Wu AH, Xiang YB, Yang HP, Zheng W, Ziogas A, Zulkifli F, Phelan CM, Iversen E, Schildkraut JM, Berchuck A, Fridley BL, Goode EL, Pharoah PD, Monteiro AN, Sellers TA, Gayther SA
Identification and molecular characterization of a new ovarian cancer susceptibility locus at 17q21.31.
Nat Commun 4: 1627 (2013)
PM ID: 23535648 PMC3709460 NIHMS447293
368: O'Rawe J, Jiang T, Sun G, Wu Y, Wang W, Hu J, Bodily P, Tian L, Hakonarson H, Johnson WE, Wei Z, Wang K, Lyon GJ
Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing.
Genome Med 5: 28 (2013)
PM ID: 23537139 PMC3706896
369: Gao F, Wei Z, An W, Wang K, Lu W
The interactomes of POU5F1 and SOX2 enhancers in human embryonic stem cells.
Sci Rep 3: 1588 (2013)
PM ID: 23549118 PMC4070749
370: Rhie SK, Coetzee SG, Noushmehr H, Yan C, Kim JM, Haiman CA, Coetzee GA
Comprehensive functional annotation of seventy-one breast cancer risk Loci.
PLoS One 8: e63925 (2013)
PM ID: 23717510 PMC3661550
371: Liu SV, Fabbri M, Gitlitz BJ, Laird-Offringa IA
Epigenetic therapy in lung cancer.
Front Oncol 3: 135 (2013)
PM ID: 23755372 PMC3667274
372: Li A, Chan B, Felix JC, Xing Y, Li M, Brody SL, Borok Z, Li C, Minoo P
Tissue-dependent consequences of Apc inactivation on proliferation and differentiation of ciliated cell progenitors via Wnt and notch signaling.
PLoS One 8: e62215 (2013)
PM ID: 23646120 PMC3639955
373: Li A, Chan B, Felix JC, Xing Y, Li M, Brody SL, Zhang Y, Holtzman MJ, Borok Z, Li C, Minoo P
Correction: Tissue-Dependent Consequences of Apc Inactivation on Proliferation and Differentiation of Ciliated Cell Progenitors via Wnt and Notch Signaling.
PLoS One 8: (2013)
PM ID: 23750190
374: Chihara Y, Kanai Y, Fujimoto H, Sugano K, Kawashima K, Liang G, Jones PA, Fujimoto K, Kuniyasu H, Hirao Y
Diagnostic markers of urothelial cancer based on DNA methylation analysis.
BMC Cancer 13: 275 (2013)
PM ID: 23735005 PMC3691617
375: Wang R, Hsu HK, Blattler A, Wang Y, Lan X, Wang Y, Hsu PY, Leu YW, Huang TH, Farnham PJ, Jin VX
LOcating non-unique matched tags (LONUT) to improve the detection of the enriched regions for ChIP-seq data.
PLoS One 8: e67788 (2013)
PM ID: 23825685 PMC3692479
376: Wang K, Kim C, Bradfield J, Guo Y, Toskala E, Otieno FG, Hou C, Thomas K, Cardinale C, Lyon GJ, Golhar R, Hakonarson H
Whole-genome DNA/RNA sequencing identifies truncating mutations in RBCK1 in a novel Mendelian disease with neuromuscular and cardiac involvement.
Genome Med 5: 67 (2013)
PM ID: 23889995 PMC3971341
377: Kim H, Wu J, Ye S, Tai CI, Zhou X, Yan H, Li P, Pera M, Ying QL
Modulation of β-catenin function maintains mouse epiblast stem cell and human embryonic stem cell self-renewal.
Nat Commun 4: 2403 (2013)
PM ID: 23985566
378: Kim K, Punj V, Choi J, Heo K, Kim JM, Laird PW, An W
Gene dysregulation by histone variant H2A.Z in bladder cancer.
Epigenetics Chromatin 6: 34 (2013)
PM ID: 24279307 PMC3853418
379: Kim JM, Heo K, Choi J, Kim K, An W
The histone variant MacroH2A regulates Ca(2+) influx through TRPC3 and TRPC6 channels.
Oncogenesis 2: e77 (2013)
PM ID: 24165580 PMC3816217
380: St Pourcain B, Whitehouse AJ, Ang WQ, Warrington NM, Glessner JT, Wang K, Timpson NJ, Evans DM, Kemp JP, Ring SM, McArdle WL, Golding J, Hakonarson H, Pennell CE, Smith GD
Common variation contributes to the genetic architecture of social communication traits.
Mol Autism 4: 34 (2013)
PM ID: 24047820 PMC3853437
381: Zhang Y, Tseng CC, Tsai YL, Fu X, Schiff R, Lee AS
Cancer cells resistant to therapy promote cell surface relocalization of GRP78 which complexes with PI3K and enhances PI(3,4,5)P3 production.
PLoS One 8: e80071 (2013)
PM ID: 24244613 PMC3823711
382: Blattler A, Yao L, Wang Y, Ye Z, Jin VX, Farnham PJ
ZBTB33 binds unmethylated regions of the genome associated with actively expressed genes.
Epigenetics Chromatin 6: 13 (2013)
PM ID: 23693142 PMC3663758
383: Hazelett DJ, Coetzee SG, Coetzee GA
A rare variant, which destroys a FoxA1 site at 8q24, is associated with prostate cancer risk.
Cell Cycle 12: 379-80 (2013)
PM ID: 23255135 PMC3575466
384: Lei MX, Chuong CM, Widelitz RB
Tuning Wnt signals for more or fewer hairs.
J Invest Dermatol 133: 7-9 (2013)
PM ID: 23299447 PMC3686512 NIHMS465506
385: Deliard S, Panossian S, Mentch FD, Kim CE, Hou C, Frackelton EC, Bradfield JP, Glessner JT, Zhang H, Wang K, Sleiman PM, Chiavacci RM, Berkowitz RI, Hakonarson H, Zhao J, Grant SF
The missense variation landscape of FTO, MC4R, and TMEM18 in obese children of African Ancestry.
Obesity (Silver Spring) 21: 159-63 (2013)
PM ID: 23505181 PMC3605748 NIHMS417070
386: Kandyba E, Leung Y, Chen YB, Widelitz R, Chuong CM, Kobielak K
Competitive balance of intrabulge BMP/Wnt signaling reveals a robust gene network ruling stem cell homeostasis and cyclic activation.
Proc Natl Acad Sci U S A 110: 1351-6 (2013)
PM ID: 23292934 PMC3557042
387: Luo B, Lee AS
The critical roles of endoplasmic reticulum chaperones and unfolded protein response in tumorigenesis and anticancer therapies.
Oncogene 32: 805-18 (2013)
PM ID: 22508478 PMC3819728 NIHMS508600
388: Davis GB, Peric M, Chan LS, Wong AK, Sener SF
Identifying risk factors for surgical site infections in mastectomy patients using the National Surgical Quality Improvement Program database.
Am J Surg 205: 194-9 (2013)
PM ID: 22944390
389: Hong J, He H, Bui P, Ryba-White B, Rumi MA, Soares MJ, Dutta D, Paul S, Kawamata M, Ochiya T, Ying QL, Rajanahalli P, Weiss ML
A focused microarray for screening rat embryonic stem cell lines.
Stem Cells Dev 22: 431-43 (2013)
PM ID: 22889370 PMC3549623
390: Liu Y, Fang Y, Zhou Y, Zandi E, Lee CL, Joo KI, Wang P
Site-specific modification of adeno-associated viruses via a genetically engineered aldehyde tag.
Small 9: 421-9 (2013)
PM ID: 23038676
391: Aragaki AK, Baron JA, Berndt SI, Bezieau S, Brenner H, Butterbach K, Caan BJ, Carlson CS, Casey G, Chan AT, Chang-Claude J, Chanock SJ, Chen LS, Coetzee GA, Coetzee SG, Conti DV, Curtis K, Duggan D, Edwards TL, Fuchs CS, Gallinger S, Giovannucci EL, Gogarten SM, Haile RW, Harrison TA, Hayes RB, Hoffmeister M, Hopper JL, Hsu L, Hudson TJ, Hunter DJ, Hutter CM, Jackson RD, Jenkins MA, Jiao S, Kooperberg C, Küry S, Lacroix AZ, Laurie CC, Laurie CA, Le Marchand L, Lemire M, Levine D, Lindor NM, Liu Y, Ma J, Makar KW, Newcomb PA, Peters U, Potter JD, Prentice RL, Qu C, Rohan T, Schoen RE, Thibodeau SN, Ulrich CM, Vijayaraghavan R, Weir B, White E, Zanke BW, Jia WH, Zhang B, Matsuo K, Shin A, Xiang YB, Jee SH, Kim DH, Ren Z, Cai Q, Long J, Shi J, Wen W, Yang G, Delahanty RJ, Genetics and Epidemiology of Colorectal Cancer Consortium (GECCO) , Colon Cancer Family Registry (CCFR) , Ji BT, Pan ZZ, Matsuda F, Gao YT, Oh JH, Ahn YO, Park EJ, Li HL, Park JW, Jo J, Jeong JY, Hosono S, Casey G, Peters U, Shu XO, Zeng YX, Zheng W
Genome-wide association analyses in East Asians identify new susceptibility loci for colorectal cancer.
Nat Genet 45: 191-6 (2013)
PM ID: 23263487 PMC3679924 NIHMS474676
392: Matsuo K, Gray MJ, Yang DY, Srivastava SA, Tripathi PB, Sonoda LA, Yoo EJ, Dubeau L, Lee AS, Lin YG
The endoplasmic reticulum stress marker, glucose-regulated protein-78 (GRP78) in visceral adipocytes predicts endometrial cancer progression and patient survival.
Gynecol Oncol 128: 552-9 (2013)
PM ID: 23200913
393: Zhu G, Ye R, Jung DY, Barron E, Friedline RH, Benoit VM, Hinton DR, Kim JK, Lee AS
GRP78 plays an essential role in adipogenesis and postnatal growth in mice.
FASEB J 27: 955-64 (2013)
PM ID: 23180827 PMC3574283
394: Trisciuoglio D, De Luca T, Desideri M, Passeri D, Gabellini C, Scarpino S, Liang C, Orlandi A, Del Bufalo D
Removal of the BH4 domain from Bcl-2 protein triggers an autophagic process that impairs tumor growth.
Neoplasia 15: 315-27 (2013)
PM ID: 23479509 PMC3593154
395: Donnelly P, Bell J, Bentley D, McVean G, Ratcliffe P, Taylor J, Wilkie A, Donnelly P, Broxholme J, Buck D, Cazier JB, Cornall R, Gregory L, Knight J, Lunter G, McVean G, Taylor J, Tomlinson I, Wilkie A, Buck D, Allan C, Attar M, Green A, Gregory L, Humphray S, Kingsbury Z, Lamble S, Lonie L, Pagnamenta A, Piazza P, Polanco G, Trebes A, McVean G, Donnelly P, Cazier JB, Broxholme J, Copley R, Fiddy S, Grocock R, Hatton E, Holmes C, Hughes L, Humburg P, Kanapin A, Lise S, Lunter G, Martin H, Murray L, McCarthy D, Rimmer A, Sahgal N, Wright B, Yau C, Sharma VP, Fenwick AL, Brockop MS, McGowan SJ, Goos JA, Hoogeboom AJ, Brady AF, Jeelani NO, Lynch SA, Mulliken JB, Murray DJ, Phipps JM, Sweeney E, Tomkins SE, Wilson LC, Bennett S, Cornall RJ, Broxholme J, Kanapin A, 500 Whole-Genome Sequences (WGS500) Consortium , Johnson D, Wall SA, van der Spek PJ, Mathijssen IM, Maxson RE, Twigg SR, Wilkie AO
Mutations in TCF12, encoding a basic helix-loop-helix partner of TWIST1, are a frequent cause of coronal craniosynostosis.
Nat Genet 45: 304-7 (2013)
PM ID: 23354436 PMC3647333
396: Pohl A, El-Khoueiry A, Yang D, Zhang W, Lurje G, Ning Y, Winder T, Hu-Lieskoven S, Iqbal S, Danenberg KD, Kahn M, Teo JL, Shriki J, Stebbing J, Lenz HJ
Pharmacogenetic profiling of CD133 is associated with response rate (RR) and progression-free survival (PFS) in patients with metastatic colorectal cancer (mCRC), treated with bevacizumab-based chemotherapy.
Pharmacogenomics J 13: 173-80 (2013)
PM ID: 22231565 PMC3326190 NIHMS337191
397: Pelikan RC, Iwata J, Suzuki A, Chai Y, Hacia JG
Identification of candidate downstream targets of TGFβ signaling during palate development by genome-wide transcript profiling.
J Cell Biochem 114: 796-807 (2013)
PM ID: 23060211 PMC3777336 NIHMS470529
398: Peters U, Jiao S, Schumacher FR, Hutter CM, Aragaki AK, Baron JA, Berndt SI, Bézieau S, Brenner H, Butterbach K, Caan BJ, Campbell PT, Carlson CS, Casey G, Chan AT, Chang-Claude J, Chanock SJ, Chen LS, Coetzee GA, Coetzee SG, Conti DV, Curtis KR, Duggan D, Edwards T, Fuchs CS, Gallinger S, Giovannucci EL, Gogarten SM, Gruber SB, Haile RW, Harrison TA, Hayes RB, Henderson BE, Hoffmeister M, Hopper JL, Hudson TJ, Hunter DJ, Jackson RD, Jee SH, Jenkins MA, Jia WH, Kolonel LN, Kooperberg C, Küry S, Lacroix AZ, Laurie CC, Laurie CA, Le Marchand L, Lemire M, Levine D, Lindor NM, Liu Y, Ma J, Makar KW, Matsuo K, Newcomb PA, Potter JD, Prentice RL, Qu C, Rohan T, Rosse SA, Schoen RE, Seminara D, Shrubsole M, Shu XO, Slattery ML, Taverna D, Thibodeau SN, Ulrich CM, White E, Xiang Y, Zanke BW, Zeng YX, Zhang B, Zheng W, Hsu L, Colon Cancer Family Registry and the Genetics and Epidemiology of Colorectal Cancer Consortium
Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.
Gastroenterology 144: 799-807.e24 (2013)
PM ID: 23266556 PMC3636812 NIHMS431479
399: Pandiyan K, You JS, Yang X, Dai C, Zhou XJ, Baylin SB, Jones PA, Liang G
Functional DNA demethylation is accompanied by chromatin accessibility.
Nucleic Acids Res 41: 3973-85 (2013)
PM ID: 23408854 PMC3627572
400: Patil AA, Ouellette AJ, Lu W, Zhang G
Rattusin, an intestinal α-defensin-related peptide in rats with a unique cysteine spacing pattern and salt-insensitive antibacterial activities.
Antimicrob Agents Chemother 57: 1823-31 (2013)
PM ID: 23380721 PMC3623328
401: Hoang T, Fenne IS, Madsen A, Bozickovic O, Johannessen M, Bergsvåg M, Lien EA, Stallcup MR, Sagen JV, Moens U, Mellgren G
cAMP response element-binding protein interacts with and stimulates the proteasomal degradation of the nuclear receptor coactivator GRIP1.
Endocrinology 154: 1513-27 (2013)
PM ID: 23462962
402: Triche TJ, Weisenberger DJ, Van Den Berg D, Laird PW, Siegmund KD
Low-level processing of Illumina Infinium DNA Methylation BeadArrays.
Nucleic Acids Res 41: e90 (2013)
PM ID: 23476028 PMC3627582
403: Heijmans J, van Lidth de Jeude JF, Koo BK, Rosekrans SL, Wielenga MC, van de Wetering M, Ferrante M, Lee AS, Onderwater JJ, Paton JC, Paton AW, Mommaas AM, Kodach LL, Hardwick JC, Hommes DW, Clevers H, Muncan V, van den Brink GR
ER stress causes rapid loss of intestinal epithelial stemness through activation of the unfolded protein response.
Cell Rep 3: 1128-39 (2013)
PM ID: 23545496
404: You JS, De Carvalho DD, Dai C, Liu M, Pandiyan K, Zhou XJ, Liang G, Jones PA
SNF5 is an essential executor of epigenetic regulation during differentiation.
PLoS Genet 9: e1003459 (2013)
PM ID: 23637628 PMC3636213
405: Garcia-Closas M, Couch FJ, Lindstrom S, Michailidou K, Schmidt MK, Brook MN, Orr N, Rhie SK, Riboli E, Feigelson HS, Le Marchand L, Buring JE, Eccles D, Miron P, Fasching PA, Brauch H, Chang-Claude J, Carpenter J, Godwin AK, Nevanlinna H, Giles GG, Cox A, Hopper JL, Bolla MK, Wang Q, Dennis J, Dicks E, Howat WJ, Schoof N, Bojesen SE, Lambrechts D, Broeks A, Andrulis IL, Guénel P, Burwinkel B, Sawyer EJ, Hollestelle A, Fletcher O, Winqvist R, Brenner H, Mannermaa A, Hamann U, Meindl A, Lindblom A, Zheng W, Devillee P, Goldberg MS, Lubinski J, Kristensen V, Swerdlow A, Anton-Culver H, Dörk T, Muir K, Matsuo K, Wu AH, Radice P, Teo SH, Shu XO, Blot W, Kang D, Hartman M, Sangrajrang S, Shen CY, Southey MC, Park DJ, Hammet F, Stone J, Veer LJ, Rutgers EJ, Lophatananon A, Stewart-Brown S, Siriwanarangsan P, Peto J, Schrauder MG, Ekici AB, Beckmann MW, Dos Santos Silva I, Johnson N, Warren H, Tomlinson I, Kerin MJ, Miller N, Marme F, Schneeweiss A, Sohn C, Truong T, Laurent-Puig P, Kerbrat P, Nordestgaard BG, Nielsen SF, Flyger H, Milne RL, Perez JI, Menéndez P, Müller H, Arndt V, Stegmaier C, Lichtner P, Lochmann M, Justenhoven C, Ko YD, Gene ENvironmental Interaction and breast CAncer (GENICA) Network , Muranen TA, Aittomäki K, Blomqvist C, Greco D, Heikkinen T, Ito H, Iwata H, Yatabe Y, Antonenkova NN, Margolin S, Kataja V, Kosma VM, Hartikainen JM, Balleine R, kConFab Investigators , Tseng CC, Berg DV, Stram DO, Neven P, Dieudonné AS, Leunen K, Rudolph A, Nickels S, Flesch-Janys D, Peterlongo P, Peissel B, Bernard L, Olson JE, Wang X, Stevens K, Severi G, Baglietto L, McLean C, Coetzee GA, Feng Y, Henderson BE, Schumacher F, Bogdanova NV, Labrèche F, Dumont M, Yip CH, Taib NA, Cheng CY, Shrubsole M, Long J, Pylkäs K, Jukkola-Vuorinen A, Kauppila S, Knight JA, Glendon G, Mulligan AM, Tollenaar RA, Seynaeve CM, Kriege M, Hooning MJ, van den Ouweland AM, van Deurzen CH, Lu W, Gao YT, Cai H, Balasubramanian SP, Cross SS, Reed MW, Signorello L, Cai Q, Shah M, Miao H, Chan CW, Chia KS, Jakubowska A, Jaworska K, Durda K, Hsiung CN, Wu PE, Yu JC, Ashworth A, Jones M, Tessier DC, González-Neira A, Pita G, Alonso MR, Vincent D, Bacot F, Ambrosone CB, Bandera EV, John EM, Chen GK, Hu JJ, Rodriguez-Gil JL, Bernstein L, Press MF, Ziegler RG, Millikan RM, Deming-Halverson SL, Nyante S, Ingles SA, Waisfisz Q, Tsimiklis H, Makalic E, Schmidt D, Bui M, Gibson L, Müller-Myhsok B, Schmutzler RK, Hein R, Dahmen N, Beckmann L, Aaltonen K, Czene K, Irwanto A, Liu J, Turnbull C, Familial Breast Cancer Study (FBCS) , Rahman N, Meijers-Heijboer H, Uitterlinden AG, Rivadeneira F, Australian Breast Cancer Tissue Bank (ABCTB) Investigators , Olswold C, Slager S, Pilarski R, Ademuyiwa F, Konstantopoulou I, Martin NG, Montgomery GW, Slamon DJ, Rauh C, Lux MP, Jud SM, Bruning T, Weaver J, Sharma P, Pathak H, Tapper W, Gerty S, Durcan L, Trichopoulos D, Tumino R, Peeters PH, Kaaks R, Campa D, Canzian F, Weiderpass E, Johansson M, Khaw KT, Travis R, Clavel-Chapelon F, Kolonel LN, Chen C, Beck A, Hankinson SE, Berg CD, Hoover RN, Lissowska J, Figueroa JD, Chasman DI, Gaudet MM, Diver WR, Willett WC, Hunter DJ, Simard J, Benitez J, Dunning AM, Sherman ME, Chenevix-Trench G, Chanock SJ, Hall P, Pharoah PD, Vachon C, Easton DF, Haiman CA, Kraft P
Genome-wide association studies identify four ER negative-specific breast cancer risk loci.
Nat Genet 45: 392-8, 398e1-2 (2013)
PM ID: 23535733 PMC3771695 NIHMS479348
406: Pharoah PD, Tsai YY, Ramus SJ, Phelan CM, Goode EL, Lawrenson K, Buckley M, Fridley BL, Tyrer JP, Shen H, Weber R, Karevan R, Larson MC, Song H, Tessier DC, Bacot F, Vincent D, Cunningham JM, Dennis J, Dicks E, Australian Cancer Study , Australian Ovarian Cancer Study Group , Aben KK, Anton-Culver H, Antonenkova N, Armasu SM, Baglietto L, Bandera EV, Beckmann MW, Birrer MJ, Bloom G, Bogdanova N, Brenton JD, Brinton LA, Brooks-Wilson A, Brown R, Butzow R, Campbell I, Carney ME, Carvalho RS, Chang-Claude J, Chen YA, Chen Z, Chow WH, Cicek MS, Coetzee G, Cook LS, Cramer DW, Cybulski C, Dansonka-Mieszkowska A, Despierre E, Doherty JA, Dörk T, du Bois A, Dürst M, Eccles D, Edwards R, Ekici AB, Fasching PA, Fenstermacher D, Flanagan J, Gao YT, Garcia-Closas M, Gentry-Maharaj A, Giles G, Gjyshi A, Gore M, Gronwald J, Guo Q, Halle MK, Harter P, Hein A, Heitz F, Hillemanns P, Hoatlin M, Høgdall E, Høgdall CK, Hosono S, Jakubowska A, Jensen A, Kalli KR, Karlan BY, Kelemen LE, Kiemeney LA, Kjaer SK, Konecny GE, Krakstad C, Kupryjanczyk J, Lambrechts D, Lambrechts S, Le ND, Lee N, Lee J, Leminen A, Lim BK, Lissowska J, Lubinski J, Lundvall L, Lurie G, Massuger LF, Matsuo K, McGuire V, McLaughlin JR, Menon U, Modugno F, Moysich KB, Nakanishi T, Narod SA, Ness RB, Nevanlinna H, Nickels S, Noushmehr H, Odunsi K, Olson S, Orlow I, Paul J, Pejovic T, Pelttari LM, Permuth-Wey J, Pike MC, Poole EM, Qu X, Risch HA, Rodriguez-Rodriguez L, Rossing MA, Rudolph A, Runnebaum I, Rzepecka IK, Salvesen HB, Schwaab I, Severi G, Shen H, Shridhar V, Shu XO, Sieh W, Southey MC, Spellman P, Tajima K, Teo SH, Terry KL, Thompson PJ, Timorek A, Tworoger SS, van Altena AM, Van Den Berg D, Vergote I, Vierkant RA, Vitonis AF, Wang-Gohrke S, Wentzensen N, Whittemore AS, Wik E, Winterhoff B, Woo YL, Wu AH, Yang HP, Zheng W, Ziogas A, Zulkifli F, Goodman MT, Hall P, Easton DF, Pearce CL, Berchuck A, Chenevix-Trench G, Iversen E, Monteiro AN, Gayther SA, Schildkraut JM, Sellers TA
GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.
Nat Genet 45: 362-70, 370e1-2 (2013)
PM ID: 23535730 PMC3693183 NIHMS474884
407: Li A, Chen M, Jiang TX, Wu P, Nie Q, Widelitz R, Chuong CM
Shaping organs by a wingless-int/Notch/nonmuscle myosin module which orients feather bud elongation.
Proc Natl Acad Sci U S A 110: E1452-61 (2013)
PM ID: 23576731 PMC3631647
408: Heo K, Kim JS, Kim K, Kim H, Choi J, Yang K, An W
Cell-penetrating H4 tail peptides potentiate p53-mediated transactivation via inhibition of G9a and HDAC1.
Oncogene 32: 2510-20 (2013)
PM ID: 22751130
409: Bateman LA, Zaro BW, Chuh KN, Pratt MR
N-Propargyloxycarbamate monosaccharides as metabolic chemical reporters of carbohydrate salvage pathways and protein glycosylation.
Chem Commun (Camb) 49: 4328-30 (2013)
PM ID: 23235740
410: Loo LW, Tiirikainen M, Cheng I, Lum-Jones A, Seifried A, Church JM, Gryfe R, Weisenberger DJ, Lindor NM, Gallinger S, Haile RW, Duggan DJ, Thibodeau SN, Casey G, Le Marchand L
Integrated analysis of genome-wide copy number alterations and gene expression in microsatellite stable, CpG island methylator phenotype-negative colon cancer.
Genes Chromosomes Cancer 52: 450-66 (2013)
PM ID: 23341073 PMC4019504 NIHMS571110
411: Balasubramaniam S, Comstock CE, Ertel A, Jeong KW, Stallcup MR, Addya S, McCue PA, Ostrander WF, Augello MA, Knudsen KE
Aberrant BAF57 signaling facilitates prometastatic phenotypes.
Clin Cancer Res 19: 2657-67 (2013)
PM ID: 23493350 PMC3655134 NIHMS455459
412: Wu P, Wu X, Jiang TX, Elsey RM, Temple BL, Divers SJ, Glenn TC, Yuan K, Chen MH, Widelitz RB, Chuong CM
Specialized stem cell niche enables repetitive renewal of alligator teeth.
Proc Natl Acad Sci U S A 110: E2009-18 (2013)
PM ID: 23671090 PMC3670376
413: Getz G, Gabriel SB, Cibulskis K, Lander E, Sivachenko A, Sougnez C, Lawrence M, Kandoth C, Dooling D, Fulton R, Fulton L, Kalicki-Veizer J, McLellan MD, O'Laughlin M, Schmidt H, Wilson RK, Ye K, Ding L, Mardis ER, Ally A, Balasundaram M, Birol I, Butterfield YS, Carlsen R, Carter C, Chu A, Chuah E, Chuah HJ, Dhalla N, Guin R, Hirst C, Holt RA, Jones SJ, Lee D, Li HI, Marra MA, Mayo M, Moore RA, Mungall AJ, Plettner P, Schein JE, Sipahimalani P, Tam A, Varhol RJ, Robertson A, Cherniack AD, Pashtan I, Saksena G, Onofrio RC, Schumacher SE, Tabak B, Carter SL, Hernandez B, Gentry J, Salvesen HB, Ardlie K, Getz G, Winckler W, Beroukhim R, Gabriel SB, Meyerson M, Hadjipanayis A, Lee S, Mahadeshwar HS, Park P, Protopopov A, Ren X, Seth S, Song X, Tang J, Xi R, Yang L, Zeng D, Kucherlapati R, Chin L, Zhang J, Auman T, Balu S, Bodenheimer T, Buda E, Hayes D, Hoyle AP, Jefferys SR, Jones CD, Meng S, Mieczkowski PA, Mose LE, Parker JS, Perou CM, Roach J, Shi Y, Simons JV, Soloway MG, Tan D, Topal MD, Waring S, Wu J, Hoadley KA, Baylin SB, Bootwalla MS, Lai PH, Triche TJ, Van Den Berg DJ, Weisenberger DJ, Laird PW, Shen H, Chin L, Zhang J, Getz G, Cho J, DiCara D, Frazer S, Heiman D, Jing R, Lin P, Mallard W, Stojanov P, Voet D, Zhang H, Zou L, Noble M, Lawrence M, Reynolds SM, Shmulevich I, Aksoy B, Antipin Y, Ciriello G, Dresdner G, Gao J, Gross B, Jacobsen A, Ladanyi M, Reva B, Sander C, Sinha R, Sumer S, Taylor BS, Cerami E, Weinhold N, Schultz N, Shen R, Benz S, Goldstein T, Haussler D, Ng S, Szeto C, Stuart J, Benz CC, Yau C, Zhang W, Annala M, Broom BM, Casasent TD, Ju Z, Liang H, Liu G, Lu Y, Unruh AK, Wakefield C, Weinstein JN, Zhang N, Liu Y, Broaddus R, Akbani R, Mills GB, Adams C, Barr T, Black AD, Bowen J, Deardurff J, Frick J, Gastier-Foster JM, Grossman T, Harper HA, Hart-Kothari M, Helsel C, Hobensack A, Kuck H, Kneile K, Leraas KM, Lichtenberg TM, McAllister C, Pyatt RE, Ramirez NC, Tabler TR, Vanhoose N, White P, Wise L, Zmuda E, Barnabas N, Berry-Green C, Blanc V, Boice L, Button M, Farkas A, Green A, MacKenzie J, Nicholson D, Kalloger SE, Gilks CB, Karlan BY, Lester J, Orsulic S, Borowsky M, Cadungog M, Czerwinski C, Huelsenbeck-Dill L, Iacocca M, Petrelli N, Rabeno B, Witkin G, Nemirovich-Danchenko E, Potapova O, Rotin D, Berchuck A, Birrer M, DiSaia P, Monovich L, Curley E, Gardner J, Mallery D, Penny R, Dowdy SC, Winterhoff B, Dao L, Gostout B, Meuter A, Teoman A, Dao F, Olvera N, Bogomolniy F, Garg K, Soslow RA, Levine DA, Abramov M, Bartlett JM, Kodeeswaran S, Parfitt J, Moiseenko F, Clarke BA, Goodman MT, Carney ME, Matsuno RK, Fisher J, Huang M, Rathmell W, Thorne L, Van Le L, Dhir R, Edwards R, Elishaev E, Zorn K, Broaddus R, Goodfellow PJ, Mutch D, Schultz N, Liu Y, Akbani R, Cherniack AD, Cerami E, Weinhold N, Shen H, Hoadley KA, Kahn AB, Bell DW, Pollock PM, Wang C, Wheeler DA, Shinbrot E, Karlan BY, Berchuck A, Dowdy SC, Winterhoff B, Goodman MT, Robertson A, Beroukhim R, Pashtan I, Salvesen HB, Laird PW, Noble M, Stuart J, Ding L, Kandoth C, Gilks C, Soslow RA, Goodfellow PJ, Mutch D, Broaddus R, Zhang W, Mills GB, Kucherlapati R, Mardis ER, Levine DA, Ayala B, Chu AL, Jensen MA, Kothiyal P, Pihl TD, Pontius J, Pot DA, Snyder EE, Srinivasan D, Kahn AB, Shaw KR, Sheth M, Davidsen T, Eley G, Ferguson ML, Demchok JA, Yang L, Guyer MS, Ozenberger BA, Sofia HJ, Cancer Genome Atlas Research Network , Kandoth C, Schultz N, Cherniack AD, Akbani R, Liu Y, Shen H, Robertson AG, Pashtan I, Shen R, Benz CC, Yau C, Laird PW, Ding L, Zhang W, Mills GB, Kucherlapati R, Mardis ER, Levine DA
Integrated genomic characterization of endometrial carcinoma.
Nature 497: 67-73 (2013)
PM ID: 23636398 PMC3704730 NIHMS458933
414: Ley TJ, Miller C, Ding L, Raphael BJ, Mungall AJ, Robertson A, Hoadley K, Triche TJ, Laird PW, Baty JD, Fulton LL, Fulton R, Heath SE, Kalicki-Veizer J, Kandoth C, Klco JM, Koboldt DC, Kanchi KL, Kulkarni S, Lamprecht TL, Larson DE, Lin L, Lu C, McLellan MD, McMichael JF, Payton J, Schmidt H, Spencer DH, Tomasson MH, Wallis JW, Wartman LD, Watson MA, Welch J, Wendl MC, Ally A, Balasundaram M, Birol I, Butterfield Y, Chiu R, Chu A, Chuah E, Chun HJ, Corbett R, Dhalla N, Guin R, He A, Hirst C, Hirst M, Holt RA, Jones S, Karsan A, Lee D, Li HI, Marra MA, Mayo M, Moore RA, Mungall K, Parker J, Pleasance E, Plettner P, Schein J, Stoll D, Swanson L, Tam A, Thiessen N, Varhol R, Wye N, Zhao Y, Gabriel S, Getz G, Sougnez C, Zou L, Leiserson MD, Vandin F, Wu HT, Applebaum F, Baylin SB, Akbani R, Broom BM, Chen K, Motter TC, Nguyen K, Weinstein JN, Zhang N, Ferguson ML, Adams C, Black A, Bowen J, Gastier-Foster J, Grossman T, Lichtenberg T, Wise L, Davidsen T, Demchok JA, Shaw KR, Sheth M, Sofia HJ, Yang L, Downing JR, Eley G, Alonso S, Ayala B, Baboud J, Backus M, Barletta SP, Berton DL, Chu AL, Girshik S, Jensen MA, Kahn A, Kothiyal P, Nicholls MC, Pihl TD, Pot DA, Raman R, Sanbhadti RN, Snyder EE, Srinivasan D, Walton J, Wan Y, Wang Z, Issa JP, Le Beau M, Carroll M, Kantarjian H, Kornblau S, Bootwalla MS, Lai PH, Shen H, Van Den Berg DJ, Weisenberger DJ, Link DC, Walter MJ, Ozenberger BA, Mardis ER, Westervelt P, Graubert TA, Dipersio JF, Wilson RK, Cancer Genome Atlas Research Network
Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia.
N Engl J Med 368: 2059-74 (2013)
PM ID: 23634996 PMC3767041 NIHMS491910
415: Monda KL, Chen GK, Taylor KC, Palmer C, Edwards TL, Lange LA, Ng MC, Adeyemo AA, Allison MA, Bielak LF, Chen G, Graff M, Irvin MR, Rhie SK, Li G, Liu Y, Liu Y, Lu Y, Nalls MA, Sun YV, Wojczynski MK, Yanek LR, Aldrich MC, Ademola A, Amos CI, Bandera EV, Bock CH, Britton A, Broeckel U, Cai Q, Caporaso NE, Carlson CS, Carpten J, Casey G, Chen WM, Chen F, Chen YD, Chiang CW, Coetzee GA, Demerath E, Deming-Halverson SL, Driver RW, Dubbert P, Feitosa MF, Feng Y, Freedman BI, Gillanders EM, Gottesman O, Guo X, Haritunians T, Harris T, Harris CC, Hennis AJ, Hernandez DG, McNeill LH, Howard TD, Howard BV, Howard VJ, Johnson KC, Kang SJ, Keating BJ, Kolb S, Kuller LH, Kutlar A, Langefeld CD, Lettre G, Lohman K, Lotay V, Lyon H, Manson JE, Maixner W, Meng YA, Monroe KR, Morhason-Bello I, Murphy AB, Mychaleckyj JC, Nadukuru R, Nathanson KL, Nayak U, N'Diaye A, Nemesure B, Wu SY, Leske MC, Neslund-Dudas C, Neuhouser M, Nyante S, Ochs-Balcom H, Ogunniyi A, Ogundiran TO, Ojengbede O, Olopade OI, Palmer JR, Ruiz-Narvaez EA, Palmer ND, Press MF, Rampersaud E, Rasmussen-Torvik LJ, Rodriguez-Gil JL, Salako B, Schadt EE, Schwartz AG, Shriner DA, Siscovick D, Smith SB, Wassertheil-Smoller S, Speliotes EK, Spitz MR, Sucheston L, Taylor H, Tayo BO, Tucker MA, Van Den Berg DJ, Edwards DR, Wang Z, Wiencke JK, Winkler TW, Witte JS, Wrensch M, Wu X, Yang JJ, Levin AM, Young TR, Zakai NA, Cushman M, Zanetti KA, Zhao JH, Zhao W, Zheng Y, Zhou J, Ziegler RG, Zmuda JM, Fernandes JK, Gilkeson GS, Kamen DL, Hunt KJ, Spruill IJ, Ambrosone CB, Ambs S, Arnett DK, Atwood L, Becker DM, Berndt SI, Bernstein L, Blot WJ, Borecki IB, Bottinger EP, Bowden DW, Burke G, Chanock SJ, Cooper RS, Ding J, Duggan D, Evans MK, Fox C, Garvey WT, Bradfield JP, Hakonarson H, Grant SF, Hsing A, Chu L, Hu JJ, Huo D, Ingles SA, John EM, Jordan JM, Kabagambe EK, Kardia SL, Kittles RA, Goodman PJ, Klein EA, Kolonel LN, Le Marchand L, Liu S, McKnight B, Millikan RC, Mosley TH, Padhukasahasram B, Williams LK, Patel SR, Peters U, Pettaway CA, Peyser PA, Psaty BM, Redline S, Rotimi CN, Rybicki BA, Sale MM, Schreiner PJ, Signorello LB, Singleton AB, Stanford JL, Strom SS, Thun MJ, Vitolins M, Zheng W, Moore JH, Williams SM, Ketkar S, Zhu X, Zonderman AB, NABEC Consortium , UKBEC Consortium , BioBank Japan Project , AGEN Consortium , Kooperberg C, Papanicolaou GJ, Henderson BE, Reiner AP, Hirschhorn JN, Loos RJ, North KE, Haiman CA
A meta-analysis identifies new loci associated with body mass index in individuals of African ancestry.
Nat Genet 45: 690-6 (2013)
PM ID: 23583978 PMC3694490 NIHMS474899
416: Lin SJ, Foley J, Jiang TX, Yeh CY, Wu P, Foley A, Yen CM, Huang YC, Cheng HC, Chen CF, Reeder B, Jee SH, Widelitz RB, Chuong CM
Topology of feather melanocyte progenitor niche allows complex pigment patterns to emerge.
Science 340: 1442-5 (2013)
PM ID: 23618762
417: Rohira AD, Chen CY, Allen JR, Johnson DL
Covalent small ubiquitin-like modifier (SUMO) modification of Maf1 protein controls RNA polymerase III-dependent transcription repression.
J Biol Chem 288: 19288-95 (2013)
PM ID: 23673667 PMC3696699
418: Li C, Li A, Xing Y, Li M, Chan B, Ouyang R, Taketo MM, Kucherlapati R, Borok Z, Minoo P
Apc deficiency alters pulmonary epithelial cell fate and inhibits Nkx2.1 via triggering TGF-beta signaling.
Dev Biol 378: 13-24 (2013)
PM ID: 23562608 PMC3838671 NIHMS463440
419: Marconett CN, Zhou B, Rieger ME, Selamat SA, Dubourd M, Fang X, Lynch SK, Stueve TR, Siegmund KD, Berman BP, Borok Z, Laird-Offringa IA
Integrated transcriptomic and epigenomic analysis of primary human lung epithelial cell differentiation.
PLoS Genet 9: e1003513 (2013)
PM ID: 23818859 PMC3688557
420: Li C, Li Y, He L, Agarwal AR, Zeng N, Cadenas E, Stiles BL
PI3K/AKT signaling regulates bioenergetics in immortalized hepatocytes.
Free Radic Biol Med 60: 29-40 (2013)
PM ID: 23376468 PMC3654039 NIHMS441394
421: Schumacher FR, Wang Z, Skotheim RI, Koster R, Chung CC, Hildebrandt MA, Kratz CP, Bakken AC, Bishop DT, Cook MB, Erickson RL, Fosså SD, Greene MH, Jacobs KB, Kanetsky PA, Kolonel LN, Loud JT, Korde LA, Le Marchand L, Lewinger JP, Lothe RA, Pike MC, Rahman N, Rubertone MV, Schwartz SM, Siegmund KD, Skinner EC, Turnbull C, Van Den Berg DJ, Wu X, Yeager M, Nathanson KL, Chanock SJ, Cortessis VK, McGlynn KA
Testicular germ cell tumor susceptibility associated with the UCK2 locus on chromosome 1q23.
Hum Mol Genet 22: 2748-53 (2013)
PM ID: 23462292 PMC3674801
422: Wei Z, Gao F, Kim S, Yang H, Lyu J, An W, Wang K, Lu W
Klf4 organizes long-range chromosomal interactions with the oct4 locus in reprogramming and pluripotency.
Cell Stem Cell 13: 36-47 (2013)
PM ID: 23747203
423: Creighton CJ, Morgan M, Gunaratne PH, Wheeler DA, Gibbs RA, Robertson A, Chu A, Beroukhim R, Cibulskis K, Signoretti S, Vandin F, Wu HT, Raphael BJ, Verhaak RG, Tamboli P, Torres-Garcia W, Akbani R, Weinstein JN, Reuter V, Hsieh JJ, Brannon A, Hakimi A, Jacobsen A, Ciriello G, Reva B, Ricketts CJ, Linehan W, Stuart JM, Rathmell W, Shen H, Laird PW, Muzny D, Davis C, Morgan M, Xi L, Chang K, Kakkar N, Treviño LR, Benton S, Reid JG, Morton D, Doddapaneni H, Han Y, Lewis L, Dinh H, Kovar C, Zhu Y, Santibanez J, Wang M, Hale W, Kalra D, Creighton CJ, Wheeler DA, Gibbs RA, Getz G, Cibulskis K, Lawrence MS, Sougnez C, Carter SL, Sivachenko A, Lichtenstein L, Stewart C, Voet D, Fisher S, Gabriel SB, Lander E, Beroukhim R, Schumacher SE, Tabak B, Saksena G, Onofrio RC, Carter SL, Cherniack AD, Gentry J, Ardlie K, Sougnez C, Getz G, Gabriel SB, Meyerson M, Robertson A, Chu A, Chun HJ, Mungall AJ, Sipahimalani P, Stoll D, Ally A, Balasundaram M, Butterfield YS, Carlsen R, Carter C, Chuah E, Coope RJ, Dhalla N, Gorski S, Guin R, Hirst C, Hirst M, Holt RA, Lebovitz C, Lee D, Li HI, Mayo M, Moore RA, Pleasance E, Plettner P, Schein JE, Shafiei A, Slobodan JR, Tam A, Thiessen N, Varhol RJ, Wye N, Zhao Y, Birol I, Jones SJ, Marra MA, Auman JT, Tan D, Jones CD, Hoadley KA, Mieczkowski PA, Mose LE, Jefferys SR, Topal MD, Liquori C, Turman YJ, Shi Y, Waring S, Buda E, Walsh J, Wu J, Bodenheimer T, Hoyle AP, Simons JV, Soloway MG, Balu S, Parker JS, Hayes D, Perou CM, Kucherlapati R, Park P, Shen H, Triche T, Weisenberger DJ, Lai PH, Bootwalla MS, Maglinte DT, Mahurkar S, Berman BP, Van Den Berg DJ, Cope L, Baylin SB, Laird PW, Creighton CJ, Wheeler DA, Getz G, Noble MS, DiCara D, Zhang H, Cho J, Heiman DI, Gehlenborg N, Voet D, Mallard W, Lin P, Frazer S, Stojanov P, Liu Y, Zhou L, Kim J, Lawrence MS, Chin L, Vandin F, Wu HT, Raphael BJ, Benz C, Yau C, Reynolds SM, Shmulevich I, Verhaak RG, Torres-Garcia W, Vegesna R, Kim H, Zhang W, Cogdell D, Jonasch E, Ding Z, Lu Y, Akbani R, Zhang N, Unruh AK, Casasent TD, Wakefield C, Tsavachidou D, Chin L, Mills GB, Weinstein JN, Jacobsen A, Brannon R, Ciriello G, Schultz N, Hakimi A, Reva B, Antipin Y, Gao J, Cerami E, Gross B, Aksoy BA, Sinha R, Weinhold N, Sumer S, Taylor BS, Shen R, Ostrovnaya I, Hsieh JJ, Berger MF, Ladanyi M, Sander C, Fei SS, Stout A, Spellman PT, Rubin DL, Liu TT, Stuart JM, Ng S, Paull EO, Carlin D, Goldstein T, Waltman P, Ellrott K, Zhu J, Haussler D, Gunaratne PH, Xiao W, Shelton C, Gardner J, Penny R, Sherman M, Mallery D, Morris S, Paulauskis J, Burnett K, Shelton T, Signoretti S, Kaelin WG, Choueiri T, Atkins MB, Penny R, Burnett K, Mallery D, Curley E, Tickoo S, Reuter V, Rathmell W, Thorne L, Boice L, Huang M, Fisher JC, Linehan WM, Vocke CD, Peterson J, Worrell R, Merino MJ, Schmidt LS, Tamboli P, Czerniak BA, Aldape KD, Wood CG, Boyd J, Weaver J, Iacocca MV, Petrelli N, Witkin G, Brown J, Czerwinski C, Huelsenbeck-Dill L, Rabeno B, Myers J, Morrison C, Bergsten J, Eckman J, Harr J, Smith C, Tucker K, Zach LA, Bshara W, Gaudioso C, Morrison C, Dhir R, Maranchie J, Nelson J, Parwani A, Potapova O, Fedosenko K, Cheville JC, Thompson RH, Signoretti S, Kaelin WG, Atkins MB, Tickoo S, Reuter V, Linehan WM, Vocke CD, Peterson J, Merino MJ, Schmidt LS, Tamboli P, Mosquera JM, Rubin MA, Blute ML, Rathmell W, Pihl T, Jensen M, Sfeir R, Kahn A, Chu A, Kothiyal P, Snyder E, Pontius J, Ayala B, Backus M, Walton J, Baboud J, Berton D, Nicholls M, Srinivasan D, Raman R, Girshik S, Kigonya P, Alonso S, Sanbhadti R, Barletta S, Pot D, Sheth M, Demchok JA, Davidsen T, Wang Z, Yang L, Tarnuzzer RW, Zhang J, Eley G, Ferguson ML, Mills Shaw KR, Guyer MS, Ozenberger BA, Sofia HJ, Cancer Genome Atlas Research Network
Comprehensive molecular characterization of clear cell renal cell carcinoma.
Nature 499: 43-9 (2013)
PM ID: 23792563 PMC3771322 NIHMS472502
424: Lai X, Zhang C, Wang J, Wang C, Lan X, Zhang C, Lei C, Chen H
mRNA expression pattern and association study with growth traits of bovine vaspin gene.
Mol Biol Rep 40: 4499-505 (2013)
PM ID: 23657594
425: Blakeley BD, Shattuck J, Coates MB, Tran E, Laird-Offringa IA, McNaughton BR
Analysis of protein-RNA complexes involving a RNA recognition motif engineered to bind hairpins with seven- and eight-nucleotide loops.
Biochemistry 52: 4745-7 (2013)
PM ID: 23806102
426: Choi IS, Yu K, Kim J, De Guzman E, Weisenberger DJ, Oghamian S, Kim HJ, Lee KH, Carroll C, Trinh BN, Kim M, Houshdaran S, Laird PW, Jones PA, Warburton D, Liang G, Koh CJ
Alterations in deoxyribonucleic acid (DNA) methylation patterns of Calca, Timp3, Mmp2, and Igf2r are associated with chronic cystitis in a cyclophosphamide-induced mouse model.
Urology 82: 253.e9-15 (2013)
PM ID: 23806407 PMC3697025 NIHMS470243
427: Xie M, Hong C, Zhang B, Lowdon RF, Xing X, Li D, Zhou X, Lee HJ, Maire CL, Ligon KL, Gascard P, Sigaroudinia M, Tlsty TD, Kadlecek T, Weiss A, O'Geen H, Farnham PJ, Madden PA, Mungall AJ, Tam A, Kamoh B, Cho S, Moore R, Hirst M, Marra MA, Costello JF, Wang T
DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape.
Nat Genet 45: 836-41 (2013)
PM ID: 23708189 PMC3695047 NIHMS475505
428: Schade B, Lesurf R, Sanguin-Gendreau V, Bui T, Deblois G, O'Toole SA, Millar EK, Zardawi SJ, Lopez-Knowles E, Sutherland RL, Giguère V, Kahn M, Hallett M, Muller WJ
β-Catenin signaling is a critical event in ErbB2-mediated mammary tumor progression.
Cancer Res 73: 4474-87 (2013)
PM ID: 23720052
429: Costa MA, Rommer E, Peric M, Nguyen TJ, Shahabi A, Davis GB, Vidar EN, Chan LS, Wong AK
Incidence of surgical-site infection is not affected by method of immediate breast reconstruction.
Plast Reconstr Surg 132: 20e-9e (2013)
PM ID: 23806951
430: Gray MJ, Mhawech-Fauceglia P, Yoo E, Yang W, Wu E, Lee AS, Lin YG
AKT inhibition mitigates GRP78 (glucose-regulated protein) expression and contribution to chemoresistance in endometrial cancers.
Int J Cancer 133: 21-30 (2013)
PM ID: 23280503 PMC3633665 NIHMS430163
431: Yu EJ, Kim SH, Kim MJ, Seo WY, Song KA, Kang MS, Yang CK, Stallcup MR, Kim JH
SUMOylation of ZFP282 potentiates its positive effect on estrogen signaling in breast tumorigenesis.
Oncogene 32: 4160-8 (2013)
PM ID: 22986521 PMC3874449 NIHMS540117
432: Fazlollahi F, Kim YH, Sipos A, Hamm-Alvarez SF, Borok Z, Kim KJ, Crandall ED
Nanoparticle translocation across mouse alveolar epithelial cell monolayers: species-specific mechanisms.
Nanomedicine 9: 786-94 (2013)
PM ID: 23454523 PMC3702651 NIHMS448182
433: Samadder NJ, Vierkant RA, Tillmans LS, Wang AH, Weisenberger DJ, Laird PW, Lynch CF, Anderson KE, French AJ, Haile RW, Potter JD, Slager SL, Smyrk TC, Thibodeau SN, Cerhan JR, Limburg PJ
Associations between colorectal cancer molecular markers and pathways with clinicopathologic features in older women.
Gastroenterology 145: 348-56.e1-2 (2013)
PM ID: 23665275 PMC3772766 NIHMS477695
434: Law MJ, Lee DS, Lee CS, Anglim PP, Haworth IS, Laird-Offringa IA
The role of the C-terminal helix of U1A protein in the interaction with U1hpII RNA.
Nucleic Acids Res 41: 7092-100 (2013)
PM ID: 23703211 PMC3737524
435: Wei Z, Huang D, Gao F, Chang WH, An W, Coetzee GA, Wang K, Lu W
Biological implications and regulatory mechanisms of long-range chromosomal interactions.
J Biol Chem 288: 22369-77 (2013)
PM ID: 23779110 PMC3829327
436: Gao F, Ling C, Shi L, Commins D, Zada G, Mack WJ, Wang K
Inversion-mediated gene fusions involving NAB2-STAT6 in an unusual malignant meningioma.
Br J Cancer 109: 1051-5 (2013)
PM ID: 23860521 PMC3749567
437: Yan HX, Wu HP, Zhang HL, Ashton C, Tong C, Wu J, Qian QJ, Wang HY, Ying QL
DNA damage-induced sustained p53 activation contributes to inflammation-associated hepatocarcinogenesis in rats.
Oncogene 32: 4565-71 (2013)
PM ID: 23069657 PMC3855850 NIHMS533950
438: Su SF, Chang YW, Andreu-Vieyra C, Fang JY, Yang Z, Han B, Lee AS, Liang G
miR-30d, miR-181a and miR-199a-5p cooperatively suppress the endoplasmic reticulum chaperone and signaling regulator GRP78 in cancer.
Oncogene 32: 4694-701 (2013)
PM ID: 23085757 PMC3787795
439: Zhang B, Zhou Y, Lin N, Lowdon RF, Hong C, Nagarajan RP, Cheng JB, Li D, Stevens M, Lee HJ, Xing X, Zhou J, Sundaram V, Elliott G, Gu J, Shi T, Gascard P, Sigaroudinia M, Tlsty TD, Kadlecek T, Weiss A, O'Geen H, Farnham PJ, Maire CL, Ligon KL, Madden PA, Tam A, Moore R, Hirst M, Marra MA, Zhang B, Costello JF, Wang T
Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm.
Genome Res 23: 1522-40 (2013)
PM ID: 23804400 PMC3759728
440: Awad S, Kunhi M, Little GH, Bai Y, An W, Bers D, Kedes L, Poizat C
Nuclear CaMKII enhances histone H3 phosphorylation and remodels chromatin during cardiac hypertrophy.
Nucleic Acids Res 41: 7656-72 (2013)
PM ID: 23804765 PMC3763528
441: Li WD, Jiao H, Wang K, Zhang CK, Glessner JT, Grant SF, Zhao H, Hakonarson H, Arlen Price R
A genome wide association study of plasma uric acid levels in obese cases and never-overweight controls.
Obesity (Silver Spring) 21: E490-4 (2013)
PM ID: 23703922 PMC3762924 NIHMS430476
442: Yan HX, Wu HP, Zhang HL, Ashton C, Tong C, Wu H, Qian QJ, Wang HY, Ying QL
p53 promotes inflammation-associated hepatocarcinogenesis by inducing HMGB1 release.
J Hepatol 59: 762-8 (2013)
PM ID: 23714159 PMC3805120 NIHMS511728
443: Thomas JP, Davis-Dao C, Lewinger JP, Siegmund KD, Hamilton AS, Daneshmand S, Skinner EC, Thomas DC, Cortessis VK
Null association between histology of first and second primary malignancies in men with bilateral testicular germ cell tumors.
Am J Epidemiol 178: 1240-5 (2013)
PM ID: 23928263 PMC3792726
444: Hattori T, Taft JM, Swist KM, Luo H, Witt H, Slattery M, Koide A, Ruthenburg AJ, Krajewski K, Strahl BD, White KP, Farnham PJ, Zhao Y, Koide S
Recombinant antibodies to histone post-translational modifications.
Nat Methods 10: 992-5 (2013)
PM ID: 23955773 PMC3828030 NIHMS510849
445: Ye S, Li P, Tong C, Ying QL
Embryonic stem cell self-renewal pathways converge on the transcription factor Tfcp2l1.
EMBO J 32: 2548-60 (2013)
PM ID: 23942238 PMC3791365
446: Bateman LA, Zaro BW, Miller SM, Pratt MR
An alkyne-aspirin chemical reporter for the detection of aspirin-dependent protein modification in living cells.
J Am Chem Soc 135: 14568-73 (2013)
PM ID: 23998633
447: Chang K, Creighton CJ, Davis C, Donehower L, Drummond J, Wheeler D, Ally A, Balasundaram M, Birol I, Butterfield SN, Chu A, Chuah E, Chun HJ, Dhalla N, Guin R, Hirst M, Hirst C, Holt RA, Jones SJ, Lee D, Li HI, Marra MA, Mayo M, Moore RA, Mungall AJ, Robertson AG, Schein JE, Sipahimalani P, Tam A, Thiessen N, Varhol RJ, Beroukhim R, Bhatt AS, Brooks AN, Cherniack AD, Freeman SS, Gabriel SB, Helman E, Jung J, Meyerson M, Ojesina AI, Pedamallu CS, Saksena G, Schumacher SE, Tabak B, Zack T, Lander ES, Bristow CA, Hadjipanayis A, Haseley P, Kucherlapati R, Lee S, Lee E, Luquette LJ, Mahadeshwar HS, Pantazi A, Parfenov M, Park PJ, Protopopov A, Ren X, Santoso N, Seidman J, Seth S, Song X, Tang J, Xi R, Xu AW, Yang L, Zeng D, Auman JT, Balu S, Buda E, Fan C, Hoadley KA, Jones CD, Meng S, Mieczkowski PA, Parker JS, Perou CM, Roach J, Shi Y, Silva GO, Tan D, Veluvolu U, Waring S, Wilkerson MD, Wu J, Zhao W, Bodenheimer T, Hayes DN, Hoyle AP, Jeffreys SR, Mose LE, Simons JV, Soloway MG, Baylin SB, Berman BP, Bootwalla MS, Danilova L, Herman JG, Hinoue T, Laird PW, Rhie SK, Shen H, Triche T, Weisenberger DJ, Carter SL, Cibulskis K, Chin L, Zhang J, Getz G, Sougnez C, Wang M, Saksena G, Carter SL, Cibulskis K, Chin L, Zhang J, Getz G, Dinh H, Doddapaneni HV, Gibbs R, Gunaratne P, Han Y, Kalra D, Kovar C, Lewis L, Morgan M, Morton D, Muzny D, Reid J, Xi L, Cho J, DiCara D, Frazer S, Gehlenborg N, Heiman DI, Kim J, Lawrence MS, Lin P, Liu Y, Noble MS, Stojanov P, Voet D, Zhang H, Zou L, Stewart C, Bernard B, Bressler R, Eakin A, Iype L, Knijnenburg T, Kramer R, Kreisberg R, Leinonen K, Lin J, Liu Y, Miller M, Reynolds SM, Rovira H, Shmulevich I, Thorsson V, Yang D, Zhang W, Amin S, Wu CJ, Wu CC, Akbani R, Aldape K, Baggerly KA, Broom B, Casasent TD, Cleland J, Creighton C, Dodda D, Edgerton M, Han L, Herbrich SM, Ju Z, Kim H, Lerner S, Li J, Liang H, Liu W, Lorenzi PL, Lu Y, Melott J, Mills GB, Nguyen L, Su X, Verhaak R, Wang W, Weinstein JN, Wong A, Yang Y, Yao J, Yao R, Yoshihara K, Yuan Y, Yung AK, Zhang N, Zheng S, Ryan M, Kane DW, Aksoy BA, Ciriello G, Dresdner G, Gao J, Gross B, Jacobsen A, Kahles A, Ladanyi M, Lee W, Lehmann KV, Miller ML, Ramirez R, Rätsch G, Reva B, Sander C, Schultz N, Senbabaoglu Y, Shen R, Sinha R, Sumer SO, Sun Y, Taylor BS, Weinhold N, Fei S, Spellman P, Benz C, Carlin D, Cline M, Craft B, Ellrott K, Goldman M, Haussler D, Ma S, Ng S, Paull E, Radenbaugh A, Salama S, Sokolov A, Stuart JM, Swatloski T, Uzunangelov V, Waltman P, Yau C, Zhu J, Hamilton SR, Getz G, Sougnez C, Abbott S, Abbott R, Dees ND, Delehaunty K, Ding L, Dooling DJ, Eldred JM, Fronick CC, Fulton R, Fulton LL, Kalicki-Veizer J, Kanchi KL, Kandoth C, Koboldt DC, Larson DE, Ley TJ, Lin L, Lu C, Magrini VJ, Mardis ER, McLellan MD, McMichael JF, Miller CA, O'Laughlin M, Pohl C, Schmidt H, Smith SM, Walker J, Wallis JW, Wendl MC, Wilson RK, Wylie T, Zhang Q, Burton R, Jensen MA, Kahn A, Pihl T, Pot D, Wan Y, Levine DA, Black AD, Bowen J, Frick J, Gastier-Foster JM, Harper HA, Helsel C, Leraas KM, Lichtenberg TM, McAllister C, Ramirez NC, Sharpe S, Wise L, Zmuda E, Chanock SJ, Davidsen T, Demchok JA, Eley G, Felau I, Ozenberger BA, Sheth M, Sofia H, Staudt L, Tarnuzzer R, Wang Z, Yang L, Zhang J, Omberg L, Margolin A, Raphael BJ, Vandin F, Wu HT, Leiserson MD, Benz SC, Vaske CJ, Noushmehr H, Knijnenburg T, Wolf D, van 't Veer L, Collisson EA, Anastassiou D, Ou Yang TH, Lopez-Bigas N, Gonzalez-Perez A, Tamborero D, Xia Z, Li W, Cho DY, Przytycka T, Hamilton M, McGuire S, Nelander S, Johansson P, Jörnsten R, Kling T, Sanchez J, Cancer Genome Atlas Research Network , Weinstein JN, Collisson EA, Mills GB, Shaw KR, Ozenberger BA, Ellrott K, Shmulevich I, Sander C, Stuart JM
The Cancer Genome Atlas Pan-Cancer analysis project.
Nat Genet 45: 1113-20 (2013)
PM ID: 24071849 PMC3919969 NIHMS549280
448: Michels KB, Binder AM, Dedeurwaerder S, Epstein CB, Greally JM, Gut I, Houseman EA, Izzi B, Kelsey KT, Meissner A, Milosavljevic A, Siegmund KD, Bock C, Irizarry RA
Recommendations for the design and analysis of epigenome-wide association studies.
Nat Methods 10: 949-55 (2013)
PM ID: 24076989
449: Schjerven H, McLaughlin J, Arenzana TL, Frietze S, Cheng D, Wadsworth SE, Lawson GW, Bensinger SJ, Farnham PJ, Witte ON, Smale ST
Selective regulation of lymphopoiesis and leukemogenesis by individual zinc fingers of Ikaros.
Nat Immunol 14: 1073-83 (2013)
PM ID: 24013668 PMC3800053 NIHMS516116
450: Wilson IM, Vucic EA, Enfield KS, Thu KL, Zhang YA, Chari R, Lockwood WW, Radulovich N, Starczynowski DT, Banáth JP, Zhang M, Pusic A, Fuller M, Lonergan KM, Rowbotham D, Yee J, English JC, Buys TP, Selamat SA, Laird-Offringa IA, Liu P, Anderson M, You M, Tsao MS, Brown CJ, Bennewith KL, Macaulay CE, Karsan A, Gazdar AF, Lam S, Lam WL
EYA4 is inactivated biallelically at a high frequency in sporadic lung cancer and is associated with familial lung cancer risk.
Oncogene : (2013)
PM ID: 24096489
451: Morgan-Bathke M, Lin HH, Chibly AM, Zhang W, Sun X, Chen CH, Flodby P, Borok Z, Wu R, Arnett D, Klein RR, Ann DK, Limesand KH
Deletion of ATG5 shows a role of autophagy in salivary homeostatic control.
J Dent Res 92: 911-7 (2013)
PM ID: 23884556 PMC3775371
452: Abeywardana T, Lin YH, Rott R, Engelender S, Pratt MR
Site-specific differences in proteasome-dependent degradation of monoubiquitinated α-synuclein.
Chem Biol 20: 1207-13 (2013)
PM ID: 24210006 PMC3855323 NIHMS530153
453: Xi G, Hu P, Qu C, Qiu S, Tong C, Ying QL
Induced neural stem cells generated from rat fibroblasts.
Genomics Proteomics Bioinformatics 11: 312-9 (2013)
PM ID: 24076032 PMC3908478 NIHMS550114
454: He S, Ni D, Ma B, Lee JH, Zhang T, Ghozalli I, Pirooz SD, Zhao Z, Bharatham N, Li B, Oh S, Lee WH, Takahashi Y, Wang HG, Minassian A, Feng P, Deretic V, Pepperkok R, Tagaya M, Yoon HS, Liang C
PtdIns(3)P-bound UVRAG coordinates Golgi-ER retrograde and Atg9 transport by differential interactions with the ER tether and the beclin 1 complex.
Nat Cell Biol 15: 1206-19 (2013)
PM ID: 24056303 PMC3805255 NIHMS517928
455: Chen WT, Zhu G, Pfaffenbach K, Kanel G, Stiles B, Lee AS
GRP78 as a regulator of liver steatosis and cancer progression mediated by loss of the tumor suppressor PTEN.
Oncogene : (2013)
PM ID: 24141775 PMC3994182 NIHMS550258
456: Wrangle J, Wang W, Koch A, Easwaran H, Mohammad HP, Vendetti F, Vancriekinge W, Demeyer T, Du Z, Parsana P, Rodgers K, Yen RW, Zahnow CA, Taube JM, Brahmer JR, Tykodi SS, Easton K, Carvajal RD, Jones PA, Laird PW, Weisenberger DJ, Tsai S, Juergens RA, Topalian SL, Rudin CM, Brock MV, Pardoll D, Baylin SB
Alterations of immune response of Non-Small Cell Lung Cancer with Azacytidine.
Oncotarget 4: 2067-79 (2013)
PM ID: 24162015 PMC3875770
457: Tam KW, Zhang W, Soh J, Stastny V, Chen M, Sun H, Thu K, Rios JJ, Yang C, Marconett CN, Selamat SA, Laird-Offringa IA, Taguchi A, Hanash S, Shames D, Ma X, Zhang MQ, Lam WL, Gazdar A
CDKN2A/p16 inactivation mechanisms and their relationship to smoke exposure and molecular features in non-small-cell lung cancer.
J Thorac Oncol 8: 1378-88 (2013)
PM ID: 24077454 PMC3951422 NIHMS514699
458: Kim K, Kim JM, Kim JS, Choi J, Lee YS, Neamati N, Song JS, Heo K, An W
VprBP has intrinsic kinase activity targeting histone H2A and represses gene transcription.
Mol Cell 52: 459-67 (2013)
PM ID: 24140421 PMC3851289 NIHMS531474
459: Blattler A, Farnham PJ
Cross-talk between site-specific transcription factors and DNA methylation states.
J Biol Chem 288: 34287-94 (2013)
PM ID: 24151070 PMC3843044
460: Kida A, Kahn M
Hypoxia selects for a quiescent, CML stem/leukemia initiating-like population dependent on CBP/catenin transcription.
Curr Mol Pharmacol 6: 204-10 (2013)
PM ID: 24720539
461: Trotta AP, Need EF, Selth LA, Chopra S, Pinnock CB, Leach DA, Coetzee GA, Butler LM, Tilley WD, Buchanan G
Knockdown of the cochaperone SGTA results in the suppression of androgen and PI3K/Akt signaling and inhibition of prostate cancer cell proliferation.
Int J Cancer 133: 2812-23 (2013)
PM ID: 23740762
462: Zeng N, Yang KT, Bayan JA, He L, Aggarwal R, Stiles JW, Hou X, Medina V, Abad D, Palian BM, Al-Abdullah I, Kandeel F, Johnson DL, Stiles BL
PTEN controls β-cell regeneration in aged mice by regulating cell cycle inhibitor p16ink4a.
Aging Cell 12: 1000-11 (2013)
PM ID: 23826727 PMC3838454 NIHMS504197
463: Luo B, Tseng CC, Adams GB, Lee AS
Deficiency of GRP94 in the hematopoietic system alters proliferation regulators in hematopoietic stem cells.
Stem Cells Dev 22: 3062-73 (2013)
PM ID: 23859598 PMC3856911
464: Liu R, Li X, Gao W, Zhou Y, Wey S, Mitra SK, Krasnoperov V, Dong D, Liu S, Li D, Zhu G, Louie S, Conti PS, Li Z, Lee AS, Gill PS
Monoclonal antibody against cell surface GRP78 as a novel agent in suppressing PI3K/AKT signaling, tumor growth, and metastasis.
Clin Cancer Res 19: 6802-11 (2013)
PM ID: 24048331
465: Chen GK, Chang X, Curtis C, Wang K
Precise inference of copy number alterations in tumor samples from SNP arrays.
Bioinformatics 29: 2964-70 (2013)
PM ID: 24021380 PMC3834792
466: Kim K, Lee B, Kim J, Choi J, Kim JM, Xiong Y, Roeder RG, An W
Linker Histone H1.2 cooperates with Cul4A and PAF1 to drive H4K31 ubiquitylation-mediated transactivation.
Cell Rep 5: 1690-703 (2013)
PM ID: 24360965 PMC3901356 NIHMS545033
467: Saito Y, Saito H, Liang G, Friedman JM
Epigenetic Alterations and MicroRNA Misexpression in Cancer and Autoimmune Diseases: a Critical Review.
Clin Rev Allergy Immunol : (2013)
PM ID: 24362548
468: Tsen F, Bhatia A, O'Brien K, Cheng CF, Chen M, Hay N, Stiles B, Woodley DT, Li W
Extracellular heat shock protein 90 signals through subdomain II and the NPVY motif of LRP-1 receptor to Akt1 and Akt2: a circuit essential for promoting skin cell migration in vitro and wound healing in vivo.
Mol Cell Biol 33: 4947-59 (2013)
PM ID: 24126057 PMC3889557
469: Shi J, Marconett CN, Duan J, Hyland PL, Li P, Wang Z, Wheeler W, Zhou B, Campan M, Lee DS, Huang J, Zhou W, Triche T, Amundadottir L, Warner A, Hutchinson A, Chen PH, Chung BS, Pesatori AC, Consonni D, Bertazzi PA, Bergen AW, Freedman M, Siegmund KD, Berman BP, Borok Z, Chatterjee N, Tucker MA, Caporaso NE, Chanock SJ, Laird-Offringa IA, Landi MT
Characterizing the genetic basis of methylome diversity in histologically normal human lung tissue.
Nat Commun 5: 3365 (2014)
PM ID: 24572595 PMC3982882 NIHMS562641
470: Shearn CT, Mercer KE, Orlicky DJ, Hennings L, Smathers-McCullough RL, Stiles BL, Ronis MJ, Petersen DR
Short term feeding of a high fat diet exerts an additive effect on hepatocellular damage and steatosis in liver-specific PTEN knockout mice.
PLoS One 9: e96553 (2014)
PM ID: 24818992 PMC4018288
471: Frietze S, O'Geen H, Littlepage LE, Simion C, Sweeney CA, Farnham PJ, Krig SR
Global analysis of ZNF217 chromatin occupancy in the breast cancer cell genome reveals an association with ERalpha.
BMC Genomics 15: 520 (2014)
PM ID: 24962896 PMC4082627
472: He K, Xu T, Xu Y, Ring A, Kahn M, Goldkorn A
Cancer cells acquire a drug resistant, highly tumorigenic, cancer stem-like phenotype through modulation of the PI3K/Akt/β-catenin/CBP pathway.
Int J Cancer 134: 43-54 (2014)
PM ID: 23784558
473: Lee JS, Xiao J, Patel P, Schade J, Wang J, Deneen B, Erdreich-Epstein A, Song HR
A novel tumor-promoting role for nuclear factor IA in glioblastomas is mediated through negative regulation of p53, p21, and PAI1.
Neuro Oncol 16: 191-203 (2014)
PM ID: 24305710 PMC3895381
474: Blackwell TS, Tager AM, Borok Z, Moore BB, Schwartz DA, Anstrom KJ, Bar-Joseph Z, Bitterman P, Blackburn MR, Bradford W, Brown KK, Chapman HA, Collard HR, Cosgrove GP, Deterding R, Doyle R, Flaherty KR, Garcia CK, Hagood JS, Henke CA, Herzog E, Hogaboam CM, Horowitz JC, King TE, Loyd JE, Lawson WE, Marsh CB, Noble PW, Noth I, Sheppard D, Olsson J, Ortiz LA, O'Riordan TG, Oury TD, Raghu G, Roman J, Sime PJ, Sisson TH, Tschumperlin D, Violette SM, Weaver TE, Wells RG, White ES, Kaminski N, Martinez FJ, Wynn TA, Thannickal VJ, Eu JP
Future directions in idiopathic pulmonary fibrosis research. An NHLBI workshop report.
Am J Respir Crit Care Med 189: 214-22 (2014)
PM ID: 24160862 PMC3983890
475: Hughes MW, Jiang TX, Lin SJ, Leung Y, Kobielak K, Widelitz RB, Chuong CM
Disrupted ectodermal organ morphogenesis in mice with a conditional histone deacetylase 1, 2 deletion in the epidermis.
J Invest Dermatol 134: 24-32 (2014)
PM ID: 23792463 PMC3843967 NIHMS495764
476: Hazelett DJ, Rhie SK, Gaddis M, Yan C, Lakeland DL, Coetzee SG, Ellipse/GAME-ON consortium , PRACTICAL Consortium , Henderson BE, Noushmehr H, Cozen W, Kote-Jarai Z, Eeles RA, Easton DF, Haiman CA, Lu W, Farnham PJ, Coetzee GA
Comprehensive functional annotation of 77 prostate cancer risk loci.
PLoS Genet 10: e1004102 (2014)
PM ID: 24497837 PMC3907334
477: He S, O'Connell D, Zhang X, Yang Y, Liang C
The intersection of Golgi-ER retrograde and autophagic trafficking.
Autophagy 10: 180-1 (2014)
PM ID: 24246972
478: Bai Z, Huang Y, Li W, Zhu Y, Jung JU, Lu C, Gao SJ
Genomewide mapping and screening of Kaposi's sarcoma-associated herpesvirus (KSHV) 3' untranslated regions identify bicistronic and polycistronic viral transcripts as frequent targets of KSHV microRNAs.
J Virol 88: 377-92 (2014)
PM ID: 24155407 PMC3911756
479: Jones PA
At the tipping point for epigenetic therapies in cancer.
J Clin Invest 124: 14-6 (2014)
PM ID: 24382384 PMC3871262
480: Jeong KW, Andreu-Vieyra C, You JS, Jones PA, Stallcup MR
Establishment of active chromatin structure at enhancer elements by mixed-lineage leukemia 1 to initiate estrogen-dependent gene expression.
Nucleic Acids Res 42: 2245-56 (2014)
PM ID: 24288367 PMC3936730
481: Erdreich-Epstein A, Robison N, Ren X, Zhou H, Xu J, Davidson TB, Schur M, Gilles FH, Ji L, Malvar J, Shackleford GM, Margol AS, Krieger MD, Judkins AR, Jones DT, Pfister SM, Kool M, Sposto R, Asgharazadeh S
PID1 (NYGGF4), a new growth-inhibitory gene in embryonal brain tumors and gliomas.
Clin Cancer Res 20: 827-36 (2014)
PM ID: 24300787 PMC3962776 NIHMS545406
482: Berchuck A, Eeles RA, Amin Al Olama A, Kote-Jarai Z, Benlloch S, Antoniou A, McGuffog L, Offit K, Lee A, Dicks E, Luccarini C, Tessier DC, Bacot F, Vincent D, LaBoissière S, Robidoux F, Nielsen SF, Cunningham JM, Windebank SA, Hilker CA, Meyer J, Angelakos M, Maskiell J, Cornelissen S, van der Schoot E, Rutgers E, Verhoef S, Hogervorst F, Boonyawongviroj P, Siriwanarungsan P, Hein A, Schrauder M, Rübner M, Oeser S, Landrith S, Williams E, Ryder-Mills E, Sargus K, McInerney N, Colleran G, Rowan A, Jones A, of Sohn C, Schneeweiss A, Bugert P, Osorio A, Barroso A, Fernández V, González-Niera M, Malats N, Real F, Herráez B, Álvarez N, Díaz E, Miguel-Martin M, Bernstein L, Lacey J, Wang S, Ma H, Lu Y, Clague DeHart J, Deapen D, Pinder R, Lee E, Schumacher F, Horn-Ross P, Reynolds P, Nelson D, Park H, Ziegler H, Wolf S, Hermann V, Fischer-Bosch M, Lo WY, Justenhoven C, Yon-Dschun K, Baisch C, Fischer HP, Pesch B, Rabstein S, Lotz A, Harth V, Heikkinen T, Erkkilä I, Aaltonene K, von Smitten K, Antonenkova N, Hillemanns P, Christiansen H, Myöhänen E, Kemiläinen H, Thorne H, Niedermayr E, Botwell D, Chenevix-Trench G, Defazio A, Gertig D, Green A, Webb P, Parsons P, Hayward N, Webb P, Whiteman D, Fung A, Yashiki J, Peuteman G, Smeets D, Van Brussel T, Corthouts K, Obi N, Heinz J, Behrens S, Eilber U, Celik M, Olchers T, Peissel B, Scuvera G, Zaffaroni D, Bonanni B, Barile M, Feroce I, Tranchant M, Valois MF, Turgeon A, Heguy L, Yee PS, Kang P, Nee KI, Mariapun S, Sook-Ye Y, Lee D, Ching TY, Mohd Taib NA, Otsukka M, Mononen K, Selander T, Weerasooriya N, Krol-Warmerdam E, Molenaar J, Blom J, Brinton L, Szeszenia-Dabrowska N, Peplonska B, Zatonski W, Chao P, Stagner M, Bos P, Blom J, Crepin E, Nieuwlaat A, Heemskerk A, Higham S, Cross S, Cramp H, Conley D, Luccarini C, Conroy D, Baynes C, Chua K, Pilarski R, Agarwal D, Pineda S, Michailidou K, Herranz J, Pita G, Moreno LT, Alonso MR, Dennis J, Wang Q, Bolla MK, Meyer KB, Menéndez-Rodríguez P, Hardisson D, Mendiola M, González-Neira A, Lindblom A, Margolin S, Swerdlow A, Ashworth A, Orr N, Jones M, Matsuo K, Ito H, Iwata H, Kondo N, kConFab Investigators , Australian Ovarian Cancer Study Group , Hartman M, Hui M, Lim WY, Iau PT, Sawyer E, Tomlinson I, Kerin M, Miller N, Kang D, Choi J-, Park SK, Noh D-, Hopper JL, Schmidt DF, Makalic E, Southey MC, Teo SH, Yip CH, Sivanandan K, Tay W-, Brauch H, Brüning T, Hamann U, Genica Network , Dunning AM, Shah M, Andrulis IL, Knight JA, Glendon G, Tchatchou S, Schmidt MK, Broeks A, Rosenberg EH, van't Veer LJ, Fasching PA, Renner SP, Ekici AB, Beckmann MW, Shen C-, Hsiung C-, Yu J-, Hou M-, Blot W, Cai Q, Wu AH, Tseng C-, Van Den Berg D, Stram DO, Cox A, Brock IW, Reed MW, Muir K, Lophatananon A, Stewart-Brown S, Siriwanarangsan P, Zheng W, Deming-Halverson S, Shrubsole MJ, Long J, Shu X-, Lu W, Gao Y-, Zhang B, Radice P, Peterlongo P, Manoukian S, Mariette F, Sangrajrang S, McKay J, Couch FJ, Toland AE, TNBCC , Yannoukakos D, Fletcher O, Johnson N, dos Santos Silva I, Peto J, Marme F, Burwinkel B, Guénel P, Truong T, Sanchez M, Mulot C, Bojesen SE, Nordestgaard BG, Flyer H, Brenner H, Dieffenbach AK, Arndt V, Stegmaier C, Mannermaa A, Kataja V, Kosma V-, Hartikainen JM, Lambrechts D, Yesilyurt BT, Floris G, Leunen K, Chang-Claude J, Rudolph A, Seibold P, Flesch-Janys D, Wang X, Olson JE, Vachon C, Purrington K, Giles GG, Severi G, Baglietto L, Haiman CA, Henderson BE, Schumacher F, Marchand LL, Simard J, Dumont M, Goldberg MS, Labréche F, Winqvist R, Pylkäs K, Jukkola-Vuorinen A, Grip M, Devilee P, Tollenaar RA, Seynaeve C, García-Closas M, Chanock SJ, Lissowska J, Figueroa JD, Czene K, Eriksson M, Humphreys K, Darabi H, Hooning MJ, Kriege M, Collée JM, Tilanus-Linthorst M, Li J, Jakubowska A, Lubinski J, Jaworska-Bieniek K, Durda K, Nevanlinna H, Muranen TA, Aittomäki K, Blomqvist C, Bogdanova N, Dörk T, Hall P, Chenevix-Trench G, Easton DF, Pharroah PD, Arias-Perez JI, Zamora P, Benítez J, Milne RL
FGF receptor genes and breast cancer susceptibility: results from the Breast Cancer Association Consortium.
Br J Cancer 110: 1088-100 (2014)
PM ID: 24548884 PMC3929867
483: Pirooz SD, He S, Zhang T, Zhang X, Zhao Z, Oh S, O'Connell D, Khalilzadeh P, Amini-Bavil-Olyaee S, Farzan M, Liang C
UVRAG is required for virus entry through combinatorial interaction with the class C-Vps complex and SNAREs.
Proc Natl Acad Sci U S A 111: 2716-21 (2014)
PM ID: 24550300 PMC3932887
484: Coleman CB, McGraw JE, Feldman ER, Roth AN, Keyes LR, Grau KR, Cochran SL, Waldschmidt TJ, Liang C, Forrest JC, Tibbetts SA
A gammaherpesvirus Bcl-2 ortholog blocks B cell receptor-mediated apoptosis and promotes the survival of developing B cells in vivo.
PLoS Pathog 10: e1003916 (2014)
PM ID: 24516386 PMC3916410
485: Li H, Chiappinelli KB, Guzzetta AA, Easwaran H, Yen RW, Vatapalli R, Topper MJ, Luo J, Connolly RM, Azad NS, Stearns V, Pardoll DM, Davidson N, Jones PA, Slamon DJ, Baylin SB, Zahnow CA, Ahuja N
Immune regulation by low doses of the DNA methyltransferase inhibitor 5-azacitidine in common human epithelial cancers.
Oncotarget 5: 587-98 (2014)
PM ID: 24583822 PMC3996658
486: Gundimeda U, McNeill TH, Fan TK, Deng R, Rayudu D, Chen Z, Cadenas E, Gopalakrishna R
Green tea catechins potentiate the neuritogenic action of brain-derived neurotrophic factor: role of 67-kDa laminin receptor and hydrogen peroxide.
Biochem Biophys Res Commun 445: 218-24 (2014)
PM ID: 24508265
487: Yang KT, Bayan JA, Zeng N, Aggarwal R, He L, Peng Z, Kassa A, Kim M, Luo Z, Shi Z, Medina V, Boddupally K, Stiles BL
Adult-onset deletion of Pten increases islet mass and beta cell proliferation in mice.
Diabetologia 57: 352-61 (2014)
PM ID: 24162585 PMC3918745 NIHMS535261
488: Pedersen JS, Valen E, Velazquez AM, Parker BJ, Rasmussen M, Lindgreen S, Lilje B, Tobin DJ, Kelly TK, Vang S, Andersson R, Jones PA, Hoover CA, Tikhonov A, Prokhortchouk E, Rubin EM, Sandelin A, Gilbert MT, Krogh A, Willerslev E, Orlando L
Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome.
Genome Res 24: 454-66 (2014)
PM ID: 24299735 PMC3941110
489: Chen WT, Tseng CC, Pfaffenbach K, Kanel G, Luo B, Stiles BL, Lee AS
Liver-specific knockout of GRP94 in mice disrupts cell adhesion, activates liver progenitor cells, and accelerates liver tumorigenesis.
Hepatology 59: 947-57 (2014)
PM ID: 24027047
490: Chu Q, Cai L, Fu Y, Chen X, Yan Z, Lin X, Zhou G, Han H, Widelitz RB, Chuong CM, Wu W, Yue Z
Dkk2/Frzb in the dermal papillae regulates feather regeneration.
Dev Biol 387: 167-78 (2014)
PM ID: 24463139
491: Chodankar R, Wu DY, Schiller BJ, Yamamoto KR, Stallcup MR
Hic-5 is a transcription coregulator that acts before and/or after glucocorticoid receptor genome occupancy in a gene-selective manner.
Proc Natl Acad Sci U S A 111: 4007-12 (2014)
PM ID: 24591583 PMC3964041
492: Gang EJ, Hsieh YT, Pham J, Zhao Y, Nguyen C, Huantes S, Park E, Naing K, Klemm L, Swaminathan S, Conway EM, Pelus LM, Crispino J, Mullighan CG, McMillan M, Müschen M, Kahn M, Kim YM
Small-molecule inhibition of CBP/catenin interactions eliminates drug-resistant clones in acute lymphoblastic leukemia.
Oncogene 33: 2169-78 (2014)
PM ID: 23728349 PMC3994178 NIHMS560207
493: Páez D, Gerger A, Zhang W, Yang D, Labonte MJ, Benhanim L, Kahn M, Lenz F, Lenz C, Ning Y, Wakatsuki T, Loupakis F, Lenz HJ
Association of common gene variants in the WNT/β-catenin pathway with colon cancer recurrence.
Pharmacogenomics J 14: 142-50 (2014)
PM ID: 23817222
494: Biancolella M, Fortini BK, Tring S, Plummer SJ, Mendoza-Fandino GA, Hartiala J, Hitchler MJ, Yan C, Schumacher FR, Conti DV, Edlund CK, Noushmehr H, Coetzee SG, Bresalier RS, Ahnen DJ, Barry EL, Berman BP, Rice JC, Coetzee GA, Casey G
Identification and characterization of functional risk variants for colorectal cancer mapping to chromosome 11q23.1.
Hum Mol Genet 23: 2198-209 (2014)
PM ID: 24256810 PMC3959808
495: Lay FD, Triche TJ, Tsai YC, Su SF, Martin SE, Daneshmand S, Skinner EC, Liang G, Chihara Y, Jones PA
Reprogramming of the human intestinal epigenome by surgical tissue transposition.
Genome Res 24: 545-53 (2014)
PM ID: 24515120 PMC3975055
496: Lin YH, Pratt MR
A dual small-molecule rheostat for precise control of protein concentration in Mammalian cells.
Chembiochem 15: 805-9 (2014)
PM ID: 24615791 PMC4038124 NIHMS584875
497: Breton CV, Park C, Siegmund K, Gauderman WJ, Whitfield-Maxwell L, Hodis HN, Avol E, Gilliland FD
NOS1 methylation and carotid artery intima-media thickness in children.
Circ Cardiovasc Genet 7: 116-22 (2014)
PM ID: 24622112 PMC4008829 NIHMS575192
498: Geary LA, Nash KA, Adisetiyo H, Liang M, Liao CP, Jeong JH, Zandi E, Roy-Burman P
CAF-secreted annexin A1 induces prostate cancer cells to gain stem cell-like features.
Mol Cancer Res 12: 607-21 (2014)
PM ID: 24464914 PMC3989391 NIHMS559276
499: Lee AS
Glucose-regulated proteins in cancer: molecular mechanisms and therapeutic potential.
Nat Rev Cancer 14: 263-76 (2014)
PM ID: 24658275
500: Su SF, de Castro Abreu AL, Chihara Y, Tsai Y, Andreu-Vieyra C, Daneshmand S, Skinner EC, Jones PA, Siegmund KD, Liang G
A panel of three markers hyper- and hypomethylated in urine sediments accurately predicts bladder cancer recurrence.
Clin Cancer Res 20: 1978-89 (2014)
PM ID: 24691641
501: Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, Giddings MC, Gilbert DM, Gingeras TR, Green ED, Guigo R, Hubbard T, Kent J, Lieb JD, Myers RM, Pazin MJ, Ren B, Stamatoyannopoulos JA, Weng Z, White KP, Hardison RC
Defining functional DNA elements in the human genome.
Proc Natl Acad Sci U S A 111: 6131-8 (2014)
PM ID: 24753594 PMC4035993
502: Huang G, Yan H, Ye S, Tong C, Ying QL
STAT3 phosphorylation at tyrosine 705 and serine 727 differentially regulates mouse ESC fates.
Stem Cells 32: 1149-60 (2014)
PM ID: 24302476
503: Li W, Dai C, Kang S, Zhou XJ
Integrative analysis of many RNA-seq datasets to study alternative splicing.
Methods 67: 313-24 (2014)
PM ID: 24583115 PMC4120771 NIHMS580551
504: Antony R, Wong KE, Patel M, Olch AJ, McComb G, Krieger M, Gilles F, Sposto R, Erdreich-Epstein A, Dhall G, Gardner S, Finlay JL
A retrospective analysis of recurrent intracranial ependymoma.
Pediatr Blood Cancer 61: 1195-201 (2014)
PM ID: 24615997
505: Wu JB, Shao C, Li X, Li Q, Hu P, Shi C, Li Y, Chen YT, Yin F, Liao CP, Stiles BL, Zhau HE, Shih JC, Chung LW
Monoamine oxidase A mediates prostate tumorigenesis and cancer metastasis.
J Clin Invest 124: 2891-908 (2014)
PM ID: 24865426 PMC4071401
506: Li G, Flodby P, Luo J, Kage H, Sipos A, Gao D, Ji Y, Beard LL, Marconett CN, Demaio L, Kim YH, Kim KJ, Laird-Offringa IA, Minoo P, Liebler JM, Zhou B, Crandall ED, Borok Z
Knockout mice reveal key roles for claudin 18 in alveolar barrier properties and fluid homeostasis.
Am J Respir Cell Mol Biol 51: 210-22 (2014)
PM ID: 24588076
507: Chen CC, Murray PJ, Jiang TX, Plikus MV, Chang YT, Lee OK, Widelitz RB, Chuong CM
Regenerative hair waves in aging mice and extra-follicular modulators follistatin, dkk1, and sfrp4.
J Invest Dermatol 134: 2086-96 (2014)
PM ID: 24618599 PMC4102635 NIHMS573140